168 lines
17 KiB
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168 lines
17 KiB
XML
<document id="439A2B92BCEF23FE38C33F3DF35101E6" ID-CLB-Dataset="292058" ID-DOI="10.1016/j.ijppaw.2015.11.003" ID-GBIF-Dataset="0497e66e-da65-45e4-829b-be252b0a9965" ID-ISSN="2213-2244" ID-PMC="PMC4840268" ID-PubMed="27141438" ID-Zenodo-Dep="10668346" IM.bibliography_approvedBy="valdenar" IM.illustrations_approvedBy="valdenar" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_approvedBy="valdenar" IM.taxonomicNames_approvedBy="felipe" IM.treatments_approvedBy="valdenar" checkinTime="1708029334558" checkinUser="felipe" docAuthor="Girard, Yvette A., Johnson, Christine K., Fritz, Heather M., Shapiro, Karen, Packham, Andrea E., Melli, Ann C., Carlson-Bremer, Daphne, Gulland, Frances M., Rejmanek, Daniel & Conrad, Patricia A." docDate="2016" docId="03BB87B0FFEB7A20766BFCEBA92CFF74" docLanguage="en" docName="IntJParasitolParasitesWildlife.5.1.5-16.pdf" docOrigin="International Journal for Parasitology: Parasites and Wildlife 5 (1)" docSource="http://dx.doi.org/10.1016/j.ijppaw.2015.11.003" docStyle="DocumentStyle:77CC2CF2FBA7BCD129DD16D0D4F96931.1:IntJParasitolParasitesWildlife.2012-.journal_article" docStyleId="77CC2CF2FBA7BCD129DD16D0D4F96931" docStyleName="IntJParasitolParasitesWildlife.2012-.journal_article" docStyleVersion="1" docTitle="Sarcocystis neurona subsp. shedding" docType="treatment" docVersion="4" lastPageNumber="13" masterDocId="FF82FFC8FFE37A28761AFFBAAD24FF8A" masterDocTitle="Detection and characterization of diverse coccidian protozoa shed by California sea lions" masterLastPageNumber="16" masterPageNumber="5" pageNumber="13" updateTime="1711652678839" updateUser="ExternalLinkService" zenodo-license-document="CC-BY-NC-ND-4.0">
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<mods:title id="F71C86ACAE00CD66DD5F13E2A9D1F6A7">Detection and characterization of diverse coccidian protozoa shed by California sea lions</mods:title>
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<mods:namePart id="CA4AF1AAF5F9CF32160FF2DEB1192014">Girard, Yvette A.</mods:namePart>
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<mods:affiliation id="92FC0C60E0EABFC270AB6702A33929F2">Karen C. Drayer Wildlife Health Center, School of Veterinary Medicine, University of California, Davis, CA, USA</mods:affiliation>
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<mods:namePart id="2D7BAFDFB60F42D0D05432FD5EF99DBD">Johnson, Christine K.</mods:namePart>
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<mods:affiliation id="3C57CC29686044B3910318AFB0AFD5DA">Karen C. Drayer Wildlife Health Center, School of Veterinary Medicine, University of California, Davis, CA, USA</mods:affiliation>
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<mods:namePart id="C07450FE8677529E80AAB9C8548DB5EA">Fritz, Heather M.</mods:namePart>
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<mods:affiliation id="B9FBB36F05664F9842DCA05D94F426A1">Department of Pathology, Microbiology and Immunology, School of Veterinary Medicine, University of California, Davis, CA, USA & Department of Veterinary Pathology and Microbiology, College of Veterinary Medicine, Washington State University, Pullman, WA, USA</mods:affiliation>
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<mods:namePart id="D5171C15C1332496B4A82C50F3AA9486">Shapiro, Karen</mods:namePart>
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<mods:affiliation id="EA2F9CDEF4496A07AB7A1B837E209C06">Department of Pathology, Microbiology and Immunology, School of Veterinary Medicine, University of California, Davis, CA, USA</mods:affiliation>
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<mods:namePart id="93C5366EA259077EDA47740451D8AC4D">Packham, Andrea E.</mods:namePart>
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<mods:affiliation id="2F52304B9F748B63F376BED408509711">Department of Pathology, Microbiology and Immunology, School of Veterinary Medicine, University of California, Davis, CA, USA</mods:affiliation>
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<mods:namePart id="03488AC47E09E59341FCA014A60573C2">Melli, Ann C.</mods:namePart>
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<mods:affiliation id="C06C5DF9D5484C33E25AE194A1874AD3">Department of Pathology, Microbiology and Immunology, School of Veterinary Medicine, University of California, Davis, CA, USA</mods:affiliation>
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<mods:namePart id="0A910F89858D2FF96642994FBE136A9E">Carlson-Bremer, Daphne</mods:namePart>
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<mods:affiliation id="802272953C43E3343BDEDC082D2632A2">Vanderbilt Institute for Global Health, Vanderbilt University, Nashville, TN, USA</mods:affiliation>
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<mods:namePart id="77C61EBEE7F3EDF47A3CE6537BA69748">Gulland, Frances M.</mods:namePart>
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<mods:affiliation id="93D6A7834A094A47B2C5FC32A2BCE4A1">The Marine Mammal Center, Sausalito, CA, USA</mods:affiliation>
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<mods:namePart id="4F6797D643B1AB09AC4EE85ED4F5801F">Rejmanek, Daniel</mods:namePart>
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<mods:affiliation id="D3F5A1591325C1ACD861066049103399">California Animal Health and Food Safety, Davis, CA, USA</mods:affiliation>
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<mods:namePart id="257C3297102AF764BCD14B325B7BE097">Conrad, Patricia A.</mods:namePart>
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<mods:affiliation id="55BA8499E296A82ECB2D11401BAF1770">Karen C. Drayer Wildlife Health Center, School of Veterinary Medicine, University of California, Davis, CA, USA & Department of Pathology, Microbiology and Immunology, School of Veterinary Medicine, University of California, Davis, CA, USA</mods:affiliation>
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<mods:title id="0A2EBFFCDF200E4A8442DCC5D7CAFE88">International Journal for Parasitology: Parasites and Wildlife</mods:title>
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<mods:date id="4F85C10AACA9A85382BF9BDF80A65B3C">2016</mods:date>
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<mods:number id="8E955F5FC20C00F4B32A7C8FBB9232F5">2016-04-30</mods:number>
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<mods:url id="E667E73E021F8B33940B1C0D90CF0F0A">http://dx.doi.org/10.1016/j.ijppaw.2015.11.003</mods:url>
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<treatment id="03BB87B0FFEB7A20766BFCEBA92CFF74" ID-DOI="http://doi.org/10.5281/zenodo.10892125" ID-Zenodo-Dep="10892125" LSID="urn:lsid:plazi:treatment:03BB87B0FFEB7A20766BFCEBA92CFF74" httpUri="http://treatment.plazi.org/id/03BB87B0FFEB7A20766BFCEBA92CFF74" lastPageNumber="13" pageId="8" pageNumber="13">
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<subSubSection id="C308652DFFEB7A20766BFCEBAFF1FCEF" box="[113,725,849,869]" pageId="8" pageNumber="13" type="nomenclature">
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<paragraph id="8BAD36A6FFEB7A20766BFCEBAFF1FCEF" blockId="8.[113,725,849,869]" box="[113,725,849,869]" pageId="8" pageNumber="13">
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<heading id="D0E581CAFFEB7A20766BFCEBAFF1FCEF" box="[113,725,849,869]" fontSize="36" level="2" pageId="8" pageNumber="13" reason="3">
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<emphasis id="B966EAB4FFEB7A20766BFCEBAFF1FCEF" box="[113,725,849,869]" italics="true" pageId="8" pageNumber="13">
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3.5. Evidence of
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<taxonomicName id="4C124D25FFEB7A20770DFCEBACF8FCEF" box="[279,476,849,869]" family="Sarcocystidae" genus="Sarcocystis" kingdom="Chromista" order="Eucoccidiida" pageId="8" pageNumber="13" phylum="Miozoa" rank="subSpecies" species="neurona" subSpecies="shedding">S. neurona shedding</taxonomicName>
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by free-ranging sea lions
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</emphasis>
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection id="C308652DFFEB7A20768BFC30A92CFF74" pageId="8" pageNumber="13" type="description">
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<paragraph id="8BAD36A6FFEB7A20768BFC30A92CFF74" blockId="8.[113,783,906,1371]" lastBlockId="8.[831,1500,179,254]" pageId="8" pageNumber="13">
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In light of the unexpected findings revealed during cell culture analysis of fecal samples from stranded hospitalized sea lions, we screened all DNA extracted from frozen, pelleted oocysts of both hospitalized and field-collected fecal samples using
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<taxonomicName id="4C124D25FFEB7A20766BFC42ADFEFB86" box="[113,218,1016,1036]" family="Sarcocystidae" genus="Sarcocystis" kingdom="Chromista" order="Eucoccidiida" pageId="8" pageNumber="13" phylum="Miozoa" rank="species" species="neurona">
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<emphasis id="B966EAB4FFEB7A20766BFC42ADFEFB86" box="[113,218,1016,1036]" italics="true" pageId="8" pageNumber="13">S. neurona</emphasis>
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</taxonomicName>
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/
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<taxonomicName id="4C124D25FFEB7A2076F8FC42AC69FB86" box="[226,333,1016,1036]" family="Sarcocystidae" genus="Sarcocystis" kingdom="Chromista" order="Eucoccidiida" pageId="8" pageNumber="13" phylum="Miozoa" rank="species" species="falcatula">
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<emphasis id="B966EAB4FFEB7A2076F8FC42AC69FB86" box="[226,333,1016,1036]" italics="true" pageId="8" pageNumber="13">S. falcatula</emphasis>
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</taxonomicName>
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-specific ITS
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<subScript id="179634E3FFEB7A2077D4FC40ACD6FB85" attach="left" box="[462,498,1018,1039]" fontSize="6" pageId="8" pageNumber="13">1500</subScript>
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primers. While none of the additional frozen, pelleted oocyst samples collected from hospitalized animals were PCR-positive for
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<taxonomicName id="4C124D25FFEB7A207434FB8AAF85FBCE" box="[558,673,1072,1092]" family="Sarcocystidae" genus="Sarcocystis" kingdom="Chromista" order="Eucoccidiida" pageId="8" pageNumber="13" phylum="Miozoa" rank="species" species="neurona">
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<emphasis id="B966EAB4FFEB7A207434FB8AAF85FBCE" box="[558,673,1072,1092]" italics="true" pageId="8" pageNumber="13">S. neurona</emphasis>
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</taxonomicName>
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-like DNA (including those remaining for CSL10089, CSL10092 and CSL10100), two fecal samples collected at Point Lobos (
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<figureCitation id="13292A23FFEB7A2074D4FBD3AE2EFBF6" box="[718,778,1129,1148]" captionStart="Fig" captionStartId="5.[88,113,1831,1845]" captionTargetBox="[97,748,1163,1800]" captionTargetId="figure-585@5.[96,749,1162,1801]" captionTargetPageId="5" captionText="Fig. 3. Three California sea lion haul-out sites (red circles) on the central California coast where fecal samples were collected from free-ranging animals. Field sample identifiers for test-positive samples are given (Ãno-, PL- and WR-) at each location. Coccidian parasite genotypes and species amplified in sample DNA are indicated in parentheses: A, Coccidia A; B, Coccidia B; Sn, Sarcocystis neurona-like; unchar, uncharacterized species. (For interpretation of the references to colour in this figure legend, the reader is referred to the web version of this article.)." figureDoi="http://doi.org/10.5281/zenodo.10668352" httpUri="https://zenodo.org/record/10668352/files/figure.png" pageId="8" pageNumber="13">Fig. 3</figureCitation>
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, samples PL11 and PL27) produced ~500 bp products in the ITS
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<subScript id="179634E3FFEB7A20768FFB1BAD9DFB3C" attach="left" box="[149,185,1185,1206]" fontSize="6" pageId="8" pageNumber="13">1500</subScript>
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PCR reaction (
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<tableCitation id="C690031DFFEB7A207741FB1BAC8CFB3E" box="[347,424,1185,1204]" captionStart="Table 3" captionStartId="6.[113,157,180,194]" captionTargetPageId="6" captionText="Table 3 Prevalence and genetic diversity of coccidian species identified by microscopy in fecal samples of free-ranging California sea lions at coastal haul-out sites." httpUri="http://table.plazi.org/id/DF6D662EFFE57A2E766BFF0EA873FF52" pageId="8" pageNumber="13" tableUuid="DF6D662EFFE57A2E766BFF0EA873FF52">Table 3</tableCitation>
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). Additional primers (Sn-ITS) targeting the ITS-1 region of
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<taxonomicName id="4C124D25FFEB7A207797FB06ACDDFB5A" box="[397,505,1212,1232]" family="Sarcocystidae" genus="Sarcocystis" kingdom="Chromista" order="Eucoccidiida" pageId="8" pageNumber="13" phylum="Miozoa" rank="species" species="neurona">
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<emphasis id="B966EAB4FFEB7A207797FB06ACDDFB5A" box="[397,505,1212,1232]" italics="true" pageId="8" pageNumber="13">S. neurona</emphasis>
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</taxonomicName>
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produced amplicons with sequences identical to hospitalized sea lion zoites collected in the present study as well as
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<taxonomicName id="4C124D25FFEB7A207775FB4EACF3FA82" box="[367,471,1268,1288]" family="Sarcocystidae" genus="Sarcocystis" kingdom="Chromista" order="Eucoccidiida" pageId="8" pageNumber="13" phylum="Miozoa" rank="species" species="neurona">
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<emphasis id="B966EAB4FFEB7A207775FB4EACF3FA82" box="[367,471,1268,1288]" italics="true" pageId="8" pageNumber="13">S. neurona</emphasis>
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</taxonomicName>
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isolated in other animals (See Supplementary data). All other attempts to amplify
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<taxonomicName id="4C124D25FFEB7A207491FAB5AFD0FAA9" box="[651,756,1295,1315]" family="Sarcocystidae" genus="Sarcocystis" kingdom="Chromista" order="Eucoccidiida" pageId="8" pageNumber="13" phylum="Miozoa" rank="species" species="neurona">
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<emphasis id="B966EAB4FFEB7A207491FAB5AFD0FAA9" box="[651,756,1295,1315]" italics="true" pageId="8" pageNumber="13">S. neurona</emphasis>
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</taxonomicName>
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in samples PL11 and PL27 using alternative primers failed with the exception of microsatellite Sn7 which, in sample PL27, produced a sequence containing the di-nucleotide repeat CA
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<subScript id="179634E3FFEB7A207379FF00A851FF42" attach="left" box="[1379,1397,186,200]" fontSize="6" pageId="8" pageNumber="13">17</subScript>
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found in
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<taxonomicName id="4C124D25FFEB7A207525FF74AE95FF68" box="[831,945,206,226]" family="Sarcocystidae" genus="Sarcocystis" kingdom="Chromista" order="Eucoccidiida" pageId="8" pageNumber="13" phylum="Miozoa" rank="species" species="neurona">
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<emphasis id="B966EAB4FFEB7A207525FF74AE95FF68" box="[831,945,206,226]" italics="true" pageId="8" pageNumber="13">S. neurona</emphasis>
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</taxonomicName>
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and zoites isolated in CSL10089, CSL10092 and CSL10100 (
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<tableCitation id="C690031DFFEB7A2075ABFF51AEDFFF74" box="[945,1019,235,254]" captionStart="Table 4" captionStartId="7.[88,132,180,194]" captionTargetPageId="7" captionText="Table 4 Characterization of zoites grown in MA104 cell cultures inoculated with sporulated, excysted oocysts of Coccidia A and B from California sea lion (CSL-) fecal samples 10089, 10092,10100 and 10266. Antigenic reactivity of zoites to Sarcocystis neurona antisera from a horse and a sea lion (CSL 9878) by indirect fluorescent antibody test (IFAT). PCR amplification of zoite DNA confirmed that zoites were similar to S. neurona (Sn)." httpUri="http://table.plazi.org/id/DF6D662EFFE47A2F7642FF0EAFC6FE8C" pageId="8" pageNumber="13" tableUuid="DF6D662EFFE47A2F7642FF0EAFC6FE8C">Table 4</tableCitation>
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).
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |