459 lines
76 KiB
XML
459 lines
76 KiB
XML
<document id="52658421A3C7169A552CC9A31B4FA581" ID-DOI="10.11646/phytotaxa.289.2.3" ID-ISSN="1179-3163" ID-Zenodo-Dep="13644452" IM.bibliography_approvedBy="felipe" IM.illustrations_approvedBy="felipe" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="GgImagineBatch" IM.taxonomicNames_approvedBy="felipe" IM.treatmentCitations_approvedBy="felipe" IM.treatments_approvedBy="felipe" checkinTime="1725366295760" checkinUser="felipe" docAuthor="Popović, Slađana, Simić, Gordana Subakov, Korać, Aleksandra, Golić, Igor & Komárek, Jiří" docDate="2016" docId="630487BCFFE9FF8AFF2F643AFD31FF57" docLanguage="en" docName="phytotaxa.289.2.3.pdf" docOrigin="Phytotaxa 289 (2)" docSource="http://dx.doi.org/10.11646/phytotaxa.289.2.3" docStyle="DocumentStyle:96748F8F1B6C902996E134952A3A36B9.13:Phytotaxa.2014-.journal_article" docStyleId="96748F8F1B6C902996E134952A3A36B9" docStyleName="Phytotaxa.2014-.journal_article" docStyleVersion="13" docTitle="Nephrococcus serbicus S. Popovic, G. Subakov Simic & Komarek 2016, sp. nov." docType="treatment" docVersion="2" lastPageNumber="143" masterDocId="9F3DFFC4FFEAFF82FFA7654CFFBAFF8E" masterDocTitle="Nephrococcus serbicus, a new coccoid cyanobacterial species from Božana Cave, Serbia" masterLastPageNumber="146" masterPageNumber="135" pageNumber="138" updateTime="1725367067935" updateUser="ExternalLinkService" zenodo-license-figures="UNSPECIFIED" zenodo-license-treatments="UNSPECIFIED">
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<mods:title id="60D1CE25FD07CB9E21047CC322207BFE">Nephrococcus serbicus, a new coccoid cyanobacterial species from Božana Cave, Serbia</mods:title>
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<mods:namePart id="5A781A6067BD55F4D03EAE52F02993C9">Popović, Slađana</mods:namePart>
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<mods:affiliation id="A4A2B838EFD4502FCCB45555168A7A1D">University of Belgrade, Scientific Institution, Institute of Chemistry, Technology and Metallurgy, Department of Ecology and Technoeconomics, Belgrade, Serbia & University of Belgrade, Faculty of Biology, Institute of Botany and Botanical Garden “ Jevremovac ”, Belgrade, Serbia</mods:affiliation>
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<mods:namePart id="CE1DDA509B761ADDABC7A013ED31AF6C">Simić, Gordana Subakov</mods:namePart>
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<mods:affiliation id="E9BAD2985EADBD1C1BCA3B04A847EB29">University of Belgrade, Faculty of Biology, Institute of Botany and Botanical Garden “ Jevremovac ”, Belgrade, Serbia</mods:affiliation>
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<mods:namePart id="1D50EBD3D5646DBC71064B39038DDDCE">Korać, Aleksandra</mods:namePart>
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<mods:affiliation id="67FCACD56085610454F6D8CB9B2E816D">University of Belgrade, Faculty of Biology, Center for Electron Microscopy, Studentski trg 16, Belgrade, Serbia</mods:affiliation>
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<mods:namePart id="D84B725CAFEBA0C1BD79769C6412C6D5">Golić, Igor</mods:namePart>
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<mods:affiliation id="74BA5E7D40163099F02755047ADFA493">University of Belgrade, Faculty of Biology, Center for Electron Microscopy, Studentski trg 16, Belgrade, Serbia</mods:affiliation>
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<mods:namePart id="09A2CECEFFC3561A759213DAA9488FB1">Komárek, Jiří</mods:namePart>
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<mods:affiliation id="A1F2F6FE617C944D52F845EFDFE7335D">Institute of Botany, Academy of Sciences of the Czech Republic, Dukelská 135, CZ- 37982 Třeboň, Czech Republic</mods:affiliation>
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<mods:title id="018B6BAABAB90E9B1A9EE2910A39108E">Phytotaxa</mods:title>
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<mods:date id="AD2369853B8FA111C10A29014013F631">2016</mods:date>
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<mods:number id="BE006E2C8E4F85AF87ACD5146C882551">2016-12-22</mods:number>
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<mods:number id="45B82F6BCFBF6A3B4E40845E77936A47">289</mods:number>
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<mods:start id="DD62054E7EF7F7A7B011BD7C65AA0DF5">135</mods:start>
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<mods:url id="B7A83052EC4D8E9AF4DFE78FF7793EB5">http://dx.doi.org/10.11646/phytotaxa.289.2.3</mods:url>
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<mods:classification id="4514858CDA594345E49400BCC63B55C5">journal article</mods:classification>
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<mods:identifier id="037A53738AD5821AA2D8C68D670F2C16" type="DOI">10.11646/phytotaxa.289.2.3</mods:identifier>
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<mods:identifier id="6181AE218F6BC2E1FCA351499137DF22" type="ISSN">1179-3163</mods:identifier>
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<subSubSection id="A3B76521FFE9FF81FF2F643AFE15FDE9" pageId="3" pageNumber="138" type="nomenclature">
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<paragraph id="EB1236AAFFE9FF81FF2F643AFBC8FE1F" blockId="3.[136,1138,373,401]" box="[136,1138,373,401]" pageId="3" pageNumber="138">
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<heading id="B05A81C6FFE9FF81FF2F643AFBC8FE1F" bold="true" box="[136,1138,373,401]" fontSize="11" level="1" pageId="3" pageNumber="138" reason="1">
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<emphasis id="D9D9EAB8FFE9FF81FF2F643AFBC8FE1F" bold="true" box="[136,1138,373,401]" pageId="3" pageNumber="138">
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<taxonomicName id="2CAD4D29FFE9FF81FF2F643AFC29FE1F" authority="S. Popovic, G. Subakov Simic & Komarek" authorityName="S. Popovic, G. Subakov Simic & Komarek" authorityYear="2016" box="[136,915,373,401]" class="Cyanobacteriia" family="Chroococcaceae" genus="Nephrococcus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="3" pageNumber="138" phylum="Cyanobacteria" rank="species" species="serbicus" status="sp. nov.">
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<emphasis id="D9D9EAB8FFE9FF81FF2F643AFE29FE1F" bold="true" box="[136,403,374,401]" italics="true" pageId="3" pageNumber="138">Nephrococcus serbicus</emphasis>
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S. Popović, G. Subakov Simić & Komárek
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</taxonomicName>
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,
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<emphasis id="D9D9EAB8FFE9FF81FC38643BFC4FFE1F" bold="true" box="[927,1013,375,401]" italics="true" pageId="3" pageNumber="138">
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<taxonomicNameLabel id="C2EA57C3FFE9FF81FC38643BFC4FFE1F" box="[927,1013,375,401]" pageId="3" pageNumber="138" rank="species">sp. nov.</taxonomicNameLabel>
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</emphasis>
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(
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<figureCitation id="73962A2FFFE9FF81FBA36434FBD0FE1F" box="[1028,1130,376,401]" captionStart-0="FIGURE 2" captionStart-1="FIGURE 3" captionStart-2="FIGURE 4" captionStart-3="FIGURE 5" captionStartId-0="3.[136,229,1881,1902]" captionStartId-1="4.[136,229,861,882]" captionStartId-2="5.[136,229,2024,2045]" captionStartId-3="6.[136,229,1752,1773]" captionTargetBox-0="[189,1398,821,1855]" captionTargetBox-1="[189,1398,190,836]" captionTargetBox-2="[189,1398,630,1998]" captionTargetBox-3="[183,1384,206,1728]" captionTargetId-0="figure-284@3.[189,1398,821,1855]" captionTargetId-1="figure-13@4.[189,1398,190,836]" captionTargetId-2="figure-82@5.[189,1398,630,1998]" captionTargetId-3="figure-13@6.[151,1436,190,1728]" captionTargetPageId-0="3" captionTargetPageId-1="4" captionTargetPageId-2="5" captionTargetPageId-3="6" captionText-0="FIGURE 2. Nephrococcus colonies from natural material: a = 2-celled stadium with yellow-brown cells and cell envelopes; b = oval, yellow-brown cells aggregated in the centre of the colony; c = yellowish, irregularly rounded cells nearly arranged in the form of a wreath; d = olive-green to yellowish, irregularly rounded cells nearly arranged in the form of a wreath; e = blue-green kidney-shaped cells arranged in a wreath formation; f = blue-green kidney-shaped cells arranged in a wreath formation, with wreaths placed opposite one another; g, h = probably resting cells. Scale bar: 10 μm." captionText-1="FIGURE 3. Nephrococcus colonies stained with toluidine blue (polysaccharides are stained purple): a, c = stadiums with four cells; b = stadiums with eight cells; d = cells aggregated in the centre of the colony; e, f = wreath formation." captionText-2="FIGURE 4. CLM of Nephrococcus showing the 3D spatial organization of cells in the Nephrococcus colony, with a series of thin optical sections of the sample (a–l)." captionText-3="FIGURE 5. The drawings of Nephrococcus serbicus: a = probably the resting cell; b = 2-celled stadium; c = 4-celled stadium; d = 8-celled stadium; e = many-celled stadium; f = wreath formation. Scale bar: 10 μm." figureDoi-0="http://doi.org/10.5281/zenodo.13644456" figureDoi-1="http://doi.org/10.5281/zenodo.13644458" figureDoi-2="http://doi.org/10.5281/zenodo.13644460" figureDoi-3="http://doi.org/10.5281/zenodo.13644462" httpUri-0="https://zenodo.org/record/13644456/files/figure.png" httpUri-1="https://zenodo.org/record/13644458/files/figure.png" httpUri-2="https://zenodo.org/record/13644460/files/figure.png" httpUri-3="https://zenodo.org/record/13644462/files/figure.png" pageId="3" pageNumber="138">Figs 2–5</figureCitation>
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)
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</emphasis>
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</heading>
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</paragraph>
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<paragraph id="EB1236AAFFE9FF81FF2F648EFE15FDE9" blockId="3.[136,1452,450,795]" pageId="3" pageNumber="138">The thallus (comprising macroscopic flat layers) is composed from more or less spherical colonies, usually containing (2) 4–16 (64) cells, and with ± firm outer envelopes. The colonies are mucilaginous, unstratified or slightly stratified, with colonial slime that is colourless. The cells are organized ± in a wreath-like formation or agglomerated in the centre. Spherical colonies up to 29 μm in diameter, with cells (usually packed together relatively densely) 1.5–6.5 μm in diameter. The cell colour varies from blue-green to olive-green or yellowish.</paragraph>
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</subSubSection>
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<subSubSection id="A3B76521FFE9FF81FF2F673AFDFEFC95" pageId="3" pageNumber="138" type="materials_examined">
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<paragraph id="EB1236AAFFE9FF81FF2F673AFB62FD21" blockId="3.[136,1452,450,795]" pageId="3" pageNumber="138">
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<emphasis id="D9D9EAB8FFE9FF81FF2F673AFEB7FD05" bold="true" box="[136,269,630,651]" pageId="3" pageNumber="138">
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<typeStatus id="34168808FFE9FF81FF2F673AFF00FD05" box="[136,186,630,651]" pageId="3" pageNumber="138">Type</typeStatus>
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locality
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</emphasis>
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:—
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||
<collectingCountry id="93BA763AFFE9FF81FE8E673AFE39FD05" box="[297,387,630,651]" name="Serbia" pageId="3" pageNumber="138">SERBIA</collectingCountry>
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. Visočka Banja: Božana Cave, biofilm from the stone (limestone) substrate of the cave wall, left side,
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<quantity id="2C559B4FFFE9FF81FAC9673AFA16FD05" box="[1390,1452,630,651]" metricMagnitude="0" metricUnit="m" metricValue="5.5" metricValueMax="6.0" metricValueMin="5.0" pageId="3" pageNumber="138" unit="m" value="5.5" valueMax="6.0" valueMin="5.0">5–6 m</quantity>
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from the cave entrance, 43˚38΄12.50΄΄N, 19˚55΄25.21΄΄E,
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<quantity id="2C559B4FFFE9FF81FD4E67D6FC9CFD21" box="[745,806,666,687]" metricMagnitude="2" metricUnit="m" metricValue="7.2299999999999995" pageId="3" pageNumber="138" unit="m" value="723.0">723 m</quantity>
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elev. Collected by
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<emphasis id="D9D9EAB8FFE9FF81FC7967D6FBFFFD21" box="[990,1093,666,687]" italics="true" pageId="3" pageNumber="138">S. Popović</emphasis>
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,
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<emphasis id="D9D9EAB8FFE9FF81FBF767D6FB68FD21" box="[1104,1234,666,687]" italics="true" pageId="3" pageNumber="138">summer 2014</emphasis>
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.
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</paragraph>
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<paragraph id="EB1236AAFFE9FF81FF2F67F2FDFEFC95" blockId="3.[136,1452,450,795]" pageId="3" pageNumber="138">
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<emphasis id="D9D9EAB8FFE9FF81FF2F67F2FF78FD5D" bold="true" box="[136,194,702,723]" pageId="3" pageNumber="138">Type:</emphasis>
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<materialsCitation id="5BC53CF7FFE9FF81FF6D67F2FF47FC95" collectionCode="BEOU" country="Serbia" county="University" location="Department of Algology" municipality="Faculty of Biology" pageId="3" pageNumber="138" specimenCode="T0008" specimenCount="1" stateProvince="Beograd" typeStatus="holotype">
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<typeStatus id="34168808FFE9FF81FF6D67F2FE99FD5D" box="[202,291,702,723]" pageId="3" pageNumber="138" type="holotype">Holotype</typeStatus>
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<specimenCode id="BB0B9ED1FFE9FF81FE8D67F2FED1FD5D" box="[298,363,702,723]" collectionCode="T" name="Tavera, Department of Geology and Geophysics" pageId="3" pageNumber="138">T0008</specimenCode>
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, preserved in formalin, here illustrated as
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<figureCitation id="73962A2FFFE9FF81FCAC67F2FCFFFD5D" box="[779,837,702,723]" captionStart="FIGURE 5" captionStartId="6.[136,229,1752,1773]" captionTargetBox="[183,1384,206,1728]" captionTargetId="figure-13@6.[151,1436,190,1728]" captionTargetPageId="6" captionText="FIGURE 5. The drawings of Nephrococcus serbicus: a = probably the resting cell; b = 2-celled stadium; c = 4-celled stadium; d = 8-celled stadium; e = many-celled stadium; f = wreath formation. Scale bar: 10 μm." figureDoi="http://doi.org/10.5281/zenodo.13644462" httpUri="https://zenodo.org/record/13644462/files/figure.png" pageId="3" pageNumber="138">Fig. 5</figureCitation>
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, LM:
|
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<figureCitation id="73962A2FFFE9FF81FC2367F2FC66FD5D" box="[900,988,702,723]" captionStart-0="FIGURE 2" captionStart-1="FIGURE 3" captionStart-2="FIGURE 4" captionStartId-0="3.[136,229,1881,1902]" captionStartId-1="4.[136,229,861,882]" captionStartId-2="5.[136,229,2024,2045]" captionTargetBox-0="[189,1398,821,1855]" captionTargetBox-1="[189,1398,190,836]" captionTargetBox-2="[189,1398,630,1998]" captionTargetId-0="figure-284@3.[189,1398,821,1855]" captionTargetId-1="figure-13@4.[189,1398,190,836]" captionTargetId-2="figure-82@5.[189,1398,630,1998]" captionTargetPageId-0="3" captionTargetPageId-1="4" captionTargetPageId-2="5" captionText-0="FIGURE 2. Nephrococcus colonies from natural material: a = 2-celled stadium with yellow-brown cells and cell envelopes; b = oval, yellow-brown cells aggregated in the centre of the colony; c = yellowish, irregularly rounded cells nearly arranged in the form of a wreath; d = olive-green to yellowish, irregularly rounded cells nearly arranged in the form of a wreath; e = blue-green kidney-shaped cells arranged in a wreath formation; f = blue-green kidney-shaped cells arranged in a wreath formation, with wreaths placed opposite one another; g, h = probably resting cells. Scale bar: 10 μm." captionText-1="FIGURE 3. Nephrococcus colonies stained with toluidine blue (polysaccharides are stained purple): a, c = stadiums with four cells; b = stadiums with eight cells; d = cells aggregated in the centre of the colony; e, f = wreath formation." captionText-2="FIGURE 4. CLM of Nephrococcus showing the 3D spatial organization of cells in the Nephrococcus colony, with a series of thin optical sections of the sample (a–l)." figureDoi-0="http://doi.org/10.5281/zenodo.13644456" figureDoi-1="http://doi.org/10.5281/zenodo.13644458" figureDoi-2="http://doi.org/10.5281/zenodo.13644460" httpUri-0="https://zenodo.org/record/13644456/files/figure.png" httpUri-1="https://zenodo.org/record/13644458/files/figure.png" httpUri-2="https://zenodo.org/record/13644460/files/figure.png" pageId="3" pageNumber="138">Figs 2–4</figureCitation>
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, at the
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<location id="EE726071FFE9FF81FB8267F2FAAEFD5D" LSID="urn:lsid:plazi:treatment:630487BCFFE9FF8AFF2F643AFD31FF57:EE726071FFE9FF81FB8267F2FAAEFD5D" box="[1061,1300,702,723]" country="Serbia" county="University" municipality="Faculty of Biology" name="Department of Algology" pageId="3" pageNumber="138" stateProvince="Beograd">Department of Algology</location>
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,
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<location id="EE726071FFE9FF81FAB867F2FA38FD5D" LSID="urn:lsid:plazi:treatment:630487BCFFE9FF8AFF2F643AFD31FF57:EE726071FFE9FF81FAB867F2FA38FD5D" box="[1311,1410,702,723]" country="Serbia" county="University" municipality="Faculty of Biology" name="Mycology" pageId="3" pageNumber="138" stateProvince="Beograd">Mycology</location>
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and
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<location id="EE726071FFE9FF81FF1A67AEFE8DFD79" LSID="urn:lsid:plazi:treatment:630487BCFFE9FF8AFF2F643AFD31FF57:EE726071FFE9FF81FF1A67AEFE8DFD79" box="[189,311,738,759]" country="Serbia" county="University" municipality="Faculty of Biology" name="Lichenology" pageId="3" pageNumber="138" stateProvince="Beograd">Lichenology</location>
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, the
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<location id="EE726071FFE9FF81FEC367AEFDA2FD79" LSID="urn:lsid:plazi:treatment:630487BCFFE9FF8AFF2F643AFD31FF57:EE726071FFE9FF81FEC367AEFDA2FD79" box="[356,536,738,759]" country="Serbia" county="University" municipality="Faculty of Biology" name="Institute of Botany" pageId="3" pageNumber="138" stateProvince="Beograd">Institute of Botany</location>
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and
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<location id="EE726071FFE9FF81FDE067AEFD4AFD79" LSID="urn:lsid:plazi:treatment:630487BCFFE9FF8AFF2F643AFD31FF57:EE726071FFE9FF81FDE067AEFD4AFD79" box="[583,752,738,759]" country="Serbia" county="University" municipality="Faculty of Biology" name="Botanical Garden" pageId="3" pageNumber="138" stateProvince="Beograd">Botanical Garden</location>
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“Jevremovac”, (
|
||
<collectionCode id="8DBCAE6FFFE9FF81FC3767AEFC6CFD79" box="[912,982,738,759]" country="Serbia" httpUri="http://biocol.org/urn:lsid:biocol.org:col:14477" lsid="urn:lsid:biocol.org:col:14477" name="University of Belgrade" pageId="3" pageNumber="138" type="Herbarium">BEOU</collectionCode>
|
||
), the
|
||
<collectingMunicipality id="0B76ACD0FFE9FF81FBAD67AEFB7AFD79" box="[1034,1216,738,759]" pageId="3" pageNumber="138">Faculty of Biology</collectingMunicipality>
|
||
,
|
||
<collectingCounty id="02734E26FFE9FF81FB6E67AEFA94FD79" box="[1225,1326,738,759]" pageId="3" pageNumber="138">University</collectingCounty>
|
||
of
|
||
<collectingRegion id="2969F848FFE9FF81FAE867AEFA12FD79" box="[1359,1448,738,759]" country="Serbia" name="Beograd" pageId="3" pageNumber="138">Belgrade</collectingRegion>
|
||
,
|
||
<collectingCountry id="93BA763AFFE9FF81FF1A664AFF47FC95" box="[189,253,774,795]" name="Serbia" pageId="3" pageNumber="138">Serbia</collectingCountry>
|
||
</materialsCitation>
|
||
.—
|
||
<typeStatus id="34168808FFE9FF81FEBE664AFEC6FC95" box="[281,380,774,795]" pageId="3" pageNumber="138" type="iconotype">Iconotype</typeStatus>
|
||
:
|
||
<figureCitation id="73962A2FFFE9FF81FE22664AFE04FC95" box="[389,446,774,795]" captionStart="FIGURE 5" captionStartId="6.[136,229,1752,1773]" captionTargetBox="[183,1384,206,1728]" captionTargetId="figure-13@6.[151,1436,190,1728]" captionTargetPageId="6" captionText="FIGURE 5. The drawings of Nephrococcus serbicus: a = probably the resting cell; b = 2-celled stadium; c = 4-celled stadium; d = 8-celled stadium; e = many-celled stadium; f = wreath formation. Scale bar: 10 μm." figureDoi="http://doi.org/10.5281/zenodo.13644462" httpUri="https://zenodo.org/record/13644462/files/figure.png" pageId="3" pageNumber="138">Fig. 5</figureCitation>
|
||
, photo
|
||
<figureCitation id="73962A2FFFE9FF81FDA1664AFDFAFC95" box="[518,576,774,795]" captionStart="FIGURE 2" captionStartId="3.[136,229,1881,1902]" captionTargetBox="[189,1398,821,1855]" captionTargetId="figure-284@3.[189,1398,821,1855]" captionTargetPageId="3" captionText="FIGURE 2. Nephrococcus colonies from natural material: a = 2-celled stadium with yellow-brown cells and cell envelopes; b = oval, yellow-brown cells aggregated in the centre of the colony; c = yellowish, irregularly rounded cells nearly arranged in the form of a wreath; d = olive-green to yellowish, irregularly rounded cells nearly arranged in the form of a wreath; e = blue-green kidney-shaped cells arranged in a wreath formation; f = blue-green kidney-shaped cells arranged in a wreath formation, with wreaths placed opposite one another; g, h = probably resting cells. Scale bar: 10 μm." figureDoi="http://doi.org/10.5281/zenodo.13644456" httpUri="https://zenodo.org/record/13644456/files/figure.png" pageId="3" pageNumber="138">Fig. 2</figureCitation>
|
||
.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<caption id="BFD26622FFE9FF81FF2F6215FD9BF870" ID-DOI="http://doi.org/10.5281/zenodo.13644456" ID-Zenodo-Dep="13644456" httpUri="https://zenodo.org/record/13644456/files/figure.png" pageId="3" pageNumber="138" startId="3.[136,229,1881,1902]" targetBox="[189,1398,821,1855]" targetPageId="3" targetType="figure">
|
||
<paragraph id="EB1236AAFFE9FF81FF2F6215FD9BF870" blockId="3.[136,1452,1881,2046]" pageId="3" pageNumber="138">
|
||
<emphasis id="D9D9EAB8FFE9FF81FF2F6215FF45F8E0" bold="true" box="[136,255,1881,1902]" pageId="3" pageNumber="138">FIGURE 2.</emphasis>
|
||
<taxonomicName id="2CAD4D29FFE9FF81FEA06215FE35F8E0" authorityName="Y.-Y.Li" authorityYear="1984" box="[263,399,1881,1902]" class="Cyanobacteriia" family="Chroococcaceae" genus="Nephrococcus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="3" pageNumber="138" phylum="Cyanobacteria" rank="genus">
|
||
<emphasis id="D9D9EAB8FFE9FF81FEA06215FE35F8E0" box="[263,399,1881,1902]" italics="true" pageId="3" pageNumber="138">Nephrococcus</emphasis>
|
||
</taxonomicName>
|
||
colonies from natural material: a = 2-celled stadium with yellow-brown cells and cell envelopes; b = oval, yellow-brown cells aggregated in the centre of the colony; c = yellowish, irregularly rounded cells nearly arranged in the form of a wreath; d = olive-green to yellowish, irregularly rounded cells nearly arranged in the form of a wreath; e = blue-green kidney-shaped cells arranged in a wreath formation; f = blue-green kidney-shaped cells arranged in a wreath formation, with wreaths placed opposite one another; g, h = probably resting cells. Scale bar: 10 μm.
|
||
</paragraph>
|
||
</caption>
|
||
<caption id="BFD26622FFEEFF86FF2F6611FB8DFC18" ID-DOI="http://doi.org/10.5281/zenodo.13644458" ID-Zenodo-Dep="13644458" httpUri="https://zenodo.org/record/13644458/files/figure.png" pageId="4" pageNumber="139" startId="4.[136,229,861,882]" targetBox="[189,1398,190,836]" targetPageId="4" targetType="figure">
|
||
<paragraph id="EB1236AAFFEEFF86FF2F6611FB8DFC18" blockId="4.[136,1452,861,918]" pageId="4" pageNumber="139">
|
||
<emphasis id="D9D9EAB8FFEEFF86FF2F6611FF44FCFC" bold="true" box="[136,254,861,882]" pageId="4" pageNumber="139">FIGURE 3.</emphasis>
|
||
<taxonomicName id="2CAD4D29FFEEFF86FEA36611FE36FCFC" authorityName="Y.-Y.Li" authorityYear="1984" box="[260,396,861,882]" class="Cyanobacteriia" family="Chroococcaceae" genus="Nephrococcus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="4" pageNumber="139" phylum="Cyanobacteria" rank="genus">
|
||
<emphasis id="D9D9EAB8FFEEFF86FEA36611FE36FCFC" box="[260,396,861,882]" italics="true" pageId="4" pageNumber="139">Nephrococcus</emphasis>
|
||
</taxonomicName>
|
||
colonies stained with toluidine blue (polysaccharides are stained purple): a, c = stadiums with four cells; b = stadiums with eight cells; d = cells aggregated in the centre of the colony; e, f = wreath formation.
|
||
</paragraph>
|
||
</caption>
|
||
<subSubSection id="A3B76521FFEEFF86FF2F66A6FC83F95D" pageId="4" pageNumber="139" type="description">
|
||
<paragraph id="EB1236AAFFEEFF86FF2F66A6FCDAFA75" blockId="4.[136,1452,1002,1999]" pageId="4" pageNumber="139">
|
||
<emphasis id="D9D9EAB8FFEEFF86FF2F66A6FDB1FB8D" bold="true" box="[136,523,1002,1027]" pageId="4" pageNumber="139">Description (LM and CLM):—</emphasis>
|
||
Colonies that were spherical, multicellular—initially 2-to 4-celled (
|
||
<figureCitation id="73962A2FFFEEFF86FA8466A6FACDFB8D" box="[1315,1399,1002,1027]" captionStart="FIGURE 2" captionStartId="3.[136,229,1881,1902]" captionTargetBox="[189,1398,821,1855]" captionTargetId="figure-284@3.[189,1398,821,1855]" captionTargetPageId="3" captionText="FIGURE 2. Nephrococcus colonies from natural material: a = 2-celled stadium with yellow-brown cells and cell envelopes; b = oval, yellow-brown cells aggregated in the centre of the colony; c = yellowish, irregularly rounded cells nearly arranged in the form of a wreath; d = olive-green to yellowish, irregularly rounded cells nearly arranged in the form of a wreath; e = blue-green kidney-shaped cells arranged in a wreath formation; f = blue-green kidney-shaped cells arranged in a wreath formation, with wreaths placed opposite one another; g, h = probably resting cells. Scale bar: 10 μm." figureDoi="http://doi.org/10.5281/zenodo.13644456" httpUri="https://zenodo.org/record/13644456/files/figure.png" pageId="4" pageNumber="139">Fig. 2a</figureCitation>
|
||
and
|
||
<figureCitation id="73962A2FFFEEFF86FF2F6142FF4FFBA9" box="[136,245,1038,1063]" captionStart="FIGURE 3" captionStartId="4.[136,229,861,882]" captionTargetBox="[189,1398,190,836]" captionTargetId="figure-13@4.[189,1398,190,836]" captionTargetPageId="4" captionText="FIGURE 3. Nephrococcus colonies stained with toluidine blue (polysaccharides are stained purple): a, c = stadiums with four cells; b = stadiums with eight cells; d = cells aggregated in the centre of the colony; e, f = wreath formation." figureDoi="http://doi.org/10.5281/zenodo.13644458" httpUri="https://zenodo.org/record/13644458/files/figure.png" pageId="4" pageNumber="139">Fig. 3a, c</figureCitation>
|
||
, respectively) and later on many-celled, probably up to 64 (
|
||
<figureCitation id="73962A2FFFEEFF86FC056142FC4DFBA9" box="[930,1015,1038,1063]" captionStart="FIGURE 2" captionStartId="3.[136,229,1881,1902]" captionTargetBox="[189,1398,821,1855]" captionTargetId="figure-284@3.[189,1398,821,1855]" captionTargetPageId="3" captionText="FIGURE 2. Nephrococcus colonies from natural material: a = 2-celled stadium with yellow-brown cells and cell envelopes; b = oval, yellow-brown cells aggregated in the centre of the colony; c = yellowish, irregularly rounded cells nearly arranged in the form of a wreath; d = olive-green to yellowish, irregularly rounded cells nearly arranged in the form of a wreath; e = blue-green kidney-shaped cells arranged in a wreath formation; f = blue-green kidney-shaped cells arranged in a wreath formation, with wreaths placed opposite one another; g, h = probably resting cells. Scale bar: 10 μm." figureDoi="http://doi.org/10.5281/zenodo.13644456" httpUri="https://zenodo.org/record/13644456/files/figure.png" pageId="4" pageNumber="139">Fig. 2b</figureCitation>
|
||
,
|
||
<figureCitation id="73962A2FFFEEFF86FBA36142FBE8FBA9" box="[1028,1106,1038,1063]" captionStart="FIGURE 3" captionStartId="4.[136,229,861,882]" captionTargetBox="[189,1398,190,836]" captionTargetId="figure-13@4.[189,1398,190,836]" captionTargetPageId="4" captionText="FIGURE 3. Nephrococcus colonies stained with toluidine blue (polysaccharides are stained purple): a, c = stadiums with four cells; b = stadiums with eight cells; d = cells aggregated in the centre of the colony; e, f = wreath formation." figureDoi="http://doi.org/10.5281/zenodo.13644458" httpUri="https://zenodo.org/record/13644458/files/figure.png" pageId="4" pageNumber="139">Fig. 3d</figureCitation>
|
||
)—were enveloped by a wide, mucilaginous and mostly unstratified or slightly stratified (
|
||
<figureCitation id="73962A2FFFEEFF86FC9F617EFC34FBC5" box="[824,910,1074,1099]" captionStart="FIGURE 4" captionStartId="5.[136,229,2024,2045]" captionTargetBox="[189,1398,630,1998]" captionTargetId="figure-82@5.[189,1398,630,1998]" captionTargetPageId="5" captionText="FIGURE 4. CLM of Nephrococcus showing the 3D spatial organization of cells in the Nephrococcus colony, with a series of thin optical sections of the sample (a–l)." figureDoi="http://doi.org/10.5281/zenodo.13644460" httpUri="https://zenodo.org/record/13644460/files/figure.png" pageId="4" pageNumber="139">Fig. 4n</figureCitation>
|
||
) colourless envelope with a firm surface. The presence of 1-celled stadiums has not been recorded, but they can evidently occur (at least in the form of possible resting cells (
|
||
<figureCitation id="73962A2FFFEEFF86FE866136FE2DFB1D" box="[289,407,1146,1171]" captionStart="FIGURE 2" captionStartId="3.[136,229,1881,1902]" captionTargetBox="[189,1398,821,1855]" captionTargetId="figure-284@3.[189,1398,821,1855]" captionTargetPageId="3" captionText="FIGURE 2. Nephrococcus colonies from natural material: a = 2-celled stadium with yellow-brown cells and cell envelopes; b = oval, yellow-brown cells aggregated in the centre of the colony; c = yellowish, irregularly rounded cells nearly arranged in the form of a wreath; d = olive-green to yellowish, irregularly rounded cells nearly arranged in the form of a wreath; e = blue-green kidney-shaped cells arranged in a wreath formation; f = blue-green kidney-shaped cells arranged in a wreath formation, with wreaths placed opposite one another; g, h = probably resting cells. Scale bar: 10 μm." figureDoi="http://doi.org/10.5281/zenodo.13644456" httpUri="https://zenodo.org/record/13644456/files/figure.png" pageId="4" pageNumber="139">
|
||
Figs
|
||
<quantity id="2C559B4FFFEEFF86FEFC6136FEC0FB1D" box="[347,378,1146,1171]" metricMagnitude="-3" metricUnit="kg" metricValue="2.0" pageId="4" pageNumber="139" unit="g" value="2.0">2g</quantity>
|
||
, h
|
||
</figureCitation>
|
||
,
|
||
<figureCitation id="73962A2FFFEEFF86FE026136FE7BFB1D" box="[421,449,1146,1171]" captionStart="FIGURE 5" captionStartId="6.[136,229,1752,1773]" captionTargetBox="[183,1384,206,1728]" captionTargetId="figure-13@6.[151,1436,190,1728]" captionTargetPageId="6" captionText="FIGURE 5. The drawings of Nephrococcus serbicus: a = probably the resting cell; b = 2-celled stadium; c = 4-celled stadium; d = 8-celled stadium; e = many-celled stadium; f = wreath formation. Scale bar: 10 μm." figureDoi="http://doi.org/10.5281/zenodo.13644462" httpUri="https://zenodo.org/record/13644462/files/figure.png" pageId="4" pageNumber="139">5a</figureCitation>
|
||
)). The envelope is more stratified in younger colonies (e.g., a 2-celled stadium). A firm surface is evident in natural and coloured materials (
|
||
<figureCitation id="73962A2FFFEEFF86FD7A61D2FC9DFB39" box="[733,807,1182,1207]" captionStart="FIGURE 2" captionStartId="3.[136,229,1881,1902]" captionTargetBox="[189,1398,821,1855]" captionTargetId="figure-284@3.[189,1398,821,1855]" captionTargetPageId="3" captionText="FIGURE 2. Nephrococcus colonies from natural material: a = 2-celled stadium with yellow-brown cells and cell envelopes; b = oval, yellow-brown cells aggregated in the centre of the colony; c = yellowish, irregularly rounded cells nearly arranged in the form of a wreath; d = olive-green to yellowish, irregularly rounded cells nearly arranged in the form of a wreath; e = blue-green kidney-shaped cells arranged in a wreath formation; f = blue-green kidney-shaped cells arranged in a wreath formation, with wreaths placed opposite one another; g, h = probably resting cells. Scale bar: 10 μm." figureDoi="http://doi.org/10.5281/zenodo.13644456" httpUri="https://zenodo.org/record/13644456/files/figure.png" pageId="4" pageNumber="139">Figs 2</figureCitation>
|
||
,
|
||
<figureCitation id="73962A2FFFEEFF86FC9361D2FCFEFB39" box="[820,836,1182,1207]" captionStart="FIGURE 3" captionStartId="4.[136,229,861,882]" captionTargetBox="[189,1398,190,836]" captionTargetId="figure-13@4.[189,1398,190,836]" captionTargetPageId="4" captionText="FIGURE 3. Nephrococcus colonies stained with toluidine blue (polysaccharides are stained purple): a, c = stadiums with four cells; b = stadiums with eight cells; d = cells aggregated in the centre of the colony; e, f = wreath formation." figureDoi="http://doi.org/10.5281/zenodo.13644458" httpUri="https://zenodo.org/record/13644458/files/figure.png" pageId="4" pageNumber="139">3</figureCitation>
|
||
). The most frequently occurring colonies contained 4, 8 and 16 cells. The colony size of the many-celled stadiums varies from 25–29 μm, and the envelope width from 4–9 μm. The cells are aggregated in the centre of the colony, sometimes just densely packed (
|
||
<figureCitation id="73962A2FFFEEFF86FB2861AAFB5EFB71" box="[1167,1252,1254,1279]" captionStart="FIGURE 2" captionStartId="3.[136,229,1881,1902]" captionTargetBox="[189,1398,821,1855]" captionTargetId="figure-284@3.[189,1398,821,1855]" captionTargetPageId="3" captionText="FIGURE 2. Nephrococcus colonies from natural material: a = 2-celled stadium with yellow-brown cells and cell envelopes; b = oval, yellow-brown cells aggregated in the centre of the colony; c = yellowish, irregularly rounded cells nearly arranged in the form of a wreath; d = olive-green to yellowish, irregularly rounded cells nearly arranged in the form of a wreath; e = blue-green kidney-shaped cells arranged in a wreath formation; f = blue-green kidney-shaped cells arranged in a wreath formation, with wreaths placed opposite one another; g, h = probably resting cells. Scale bar: 10 μm." figureDoi="http://doi.org/10.5281/zenodo.13644456" httpUri="https://zenodo.org/record/13644456/files/figure.png" pageId="4" pageNumber="139">Fig. 2b</figureCitation>
|
||
,
|
||
<figureCitation id="73962A2FFFEEFF86FB5661AAFAFFFB71" box="[1265,1349,1254,1279]" captionStart="FIGURE 3" captionStartId="4.[136,229,861,882]" captionTargetBox="[189,1398,190,836]" captionTargetId="figure-13@4.[189,1398,190,836]" captionTargetPageId="4" captionText="FIGURE 3. Nephrococcus colonies stained with toluidine blue (polysaccharides are stained purple): a, c = stadiums with four cells; b = stadiums with eight cells; d = cells aggregated in the centre of the colony; e, f = wreath formation." figureDoi="http://doi.org/10.5281/zenodo.13644458" httpUri="https://zenodo.org/record/13644458/files/figure.png" pageId="4" pageNumber="139">Fig. 3d</figureCitation>
|
||
), but are often arranged in the form of a wreath (
|
||
<figureCitation id="73962A2FFFEEFF86FDEC6046FD01FAAD" box="[587,699,1290,1315]" captionStart="FIGURE 2" captionStartId="3.[136,229,1881,1902]" captionTargetBox="[189,1398,821,1855]" captionTargetId="figure-284@3.[189,1398,821,1855]" captionTargetPageId="3" captionText="FIGURE 2. Nephrococcus colonies from natural material: a = 2-celled stadium with yellow-brown cells and cell envelopes; b = oval, yellow-brown cells aggregated in the centre of the colony; c = yellowish, irregularly rounded cells nearly arranged in the form of a wreath; d = olive-green to yellowish, irregularly rounded cells nearly arranged in the form of a wreath; e = blue-green kidney-shaped cells arranged in a wreath formation; f = blue-green kidney-shaped cells arranged in a wreath formation, with wreaths placed opposite one another; g, h = probably resting cells. Scale bar: 10 μm." figureDoi="http://doi.org/10.5281/zenodo.13644456" httpUri="https://zenodo.org/record/13644456/files/figure.png" pageId="4" pageNumber="139">Figs 2e, f</figureCitation>
|
||
,
|
||
<figureCitation id="73962A2FFFEEFF86FD606046FD55FAAD" box="[711,751,1290,1315]" captionStart="FIGURE 4" captionStartId="5.[136,229,2024,2045]" captionTargetBox="[189,1398,630,1998]" captionTargetId="figure-82@5.[189,1398,630,1998]" captionTargetPageId="5" captionText="FIGURE 4. CLM of Nephrococcus showing the 3D spatial organization of cells in the Nephrococcus colony, with a series of thin optical sections of the sample (a–l)." figureDoi="http://doi.org/10.5281/zenodo.13644460" httpUri="https://zenodo.org/record/13644460/files/figure.png" pageId="4" pageNumber="139">
|
||
<quantity id="2C559B4FFFEEFF86FD606046FD55FAAD" box="[711,751,1290,1315]" metricMagnitude="0" metricUnit="m" metricValue="4.0" pageId="4" pageNumber="139" unit="m" value="4.0">4m</quantity>
|
||
</figureCitation>
|
||
). Usually one wreath can be seen in the first plan, but at least two wreaths are probably formed and they are usually placed opposite one another (
|
||
<figureCitation id="73962A2FFFEEFF86FBEE6062FB20FAC9" box="[1097,1178,1326,1351]" captionStart="FIGURE 2" captionStartId="3.[136,229,1881,1902]" captionTargetBox="[189,1398,821,1855]" captionTargetId="figure-284@3.[189,1398,821,1855]" captionTargetPageId="3" captionText="FIGURE 2. Nephrococcus colonies from natural material: a = 2-celled stadium with yellow-brown cells and cell envelopes; b = oval, yellow-brown cells aggregated in the centre of the colony; c = yellowish, irregularly rounded cells nearly arranged in the form of a wreath; d = olive-green to yellowish, irregularly rounded cells nearly arranged in the form of a wreath; e = blue-green kidney-shaped cells arranged in a wreath formation; f = blue-green kidney-shaped cells arranged in a wreath formation, with wreaths placed opposite one another; g, h = probably resting cells. Scale bar: 10 μm." figureDoi="http://doi.org/10.5281/zenodo.13644456" httpUri="https://zenodo.org/record/13644456/files/figure.png" pageId="4" pageNumber="139">Fig. 2f</figureCitation>
|
||
). It is possible for more wreaths to be present. The shape of the cells varies from round, oval (
|
||
<figureCitation id="73962A2FFFEEFF86FC31601EFC52FAE5" box="[918,1000,1362,1387]" captionStart="FIGURE 2" captionStartId="3.[136,229,1881,1902]" captionTargetBox="[189,1398,821,1855]" captionTargetId="figure-284@3.[189,1398,821,1855]" captionTargetPageId="3" captionText="FIGURE 2. Nephrococcus colonies from natural material: a = 2-celled stadium with yellow-brown cells and cell envelopes; b = oval, yellow-brown cells aggregated in the centre of the colony; c = yellowish, irregularly rounded cells nearly arranged in the form of a wreath; d = olive-green to yellowish, irregularly rounded cells nearly arranged in the form of a wreath; e = blue-green kidney-shaped cells arranged in a wreath formation; f = blue-green kidney-shaped cells arranged in a wreath formation, with wreaths placed opposite one another; g, h = probably resting cells. Scale bar: 10 μm." figureDoi="http://doi.org/10.5281/zenodo.13644456" httpUri="https://zenodo.org/record/13644456/files/figure.png" pageId="4" pageNumber="139">Fig. 2b</figureCitation>
|
||
) or an irregular round shape (
|
||
<figureCitation id="73962A2FFFEEFF86FA90601EFA19FAE5" box="[1335,1443,1362,1387]" captionStart="FIGURE 2" captionStartId="3.[136,229,1881,1902]" captionTargetBox="[189,1398,821,1855]" captionTargetId="figure-284@3.[189,1398,821,1855]" captionTargetPageId="3" captionText="FIGURE 2. Nephrococcus colonies from natural material: a = 2-celled stadium with yellow-brown cells and cell envelopes; b = oval, yellow-brown cells aggregated in the centre of the colony; c = yellowish, irregularly rounded cells nearly arranged in the form of a wreath; d = olive-green to yellowish, irregularly rounded cells nearly arranged in the form of a wreath; e = blue-green kidney-shaped cells arranged in a wreath formation; f = blue-green kidney-shaped cells arranged in a wreath formation, with wreaths placed opposite one another; g, h = probably resting cells. Scale bar: 10 μm." figureDoi="http://doi.org/10.5281/zenodo.13644456" httpUri="https://zenodo.org/record/13644456/files/figure.png" pageId="4" pageNumber="139">Fig. 2c, d</figureCitation>
|
||
) to a kidney shape (
|
||
<figureCitation id="73962A2FFFEEFF86FEFB603AFE7FFA01" box="[348,453,1398,1423]" captionStart="FIGURE 2" captionStartId="3.[136,229,1881,1902]" captionTargetBox="[189,1398,821,1855]" captionTargetId="figure-284@3.[189,1398,821,1855]" captionTargetPageId="3" captionText="FIGURE 2. Nephrococcus colonies from natural material: a = 2-celled stadium with yellow-brown cells and cell envelopes; b = oval, yellow-brown cells aggregated in the centre of the colony; c = yellowish, irregularly rounded cells nearly arranged in the form of a wreath; d = olive-green to yellowish, irregularly rounded cells nearly arranged in the form of a wreath; e = blue-green kidney-shaped cells arranged in a wreath formation; f = blue-green kidney-shaped cells arranged in a wreath formation, with wreaths placed opposite one another; g, h = probably resting cells. Scale bar: 10 μm." figureDoi="http://doi.org/10.5281/zenodo.13644456" httpUri="https://zenodo.org/record/13644456/files/figure.png" pageId="4" pageNumber="139">Fig. 2e, f</figureCitation>
|
||
), which is most common. The cell colour varies from blue-green (
|
||
<figureCitation id="73962A2FFFEEFF86FB09603AFAADFA01" box="[1198,1303,1398,1423]" captionStart="FIGURE 2" captionStartId="3.[136,229,1881,1902]" captionTargetBox="[189,1398,821,1855]" captionTargetId="figure-284@3.[189,1398,821,1855]" captionTargetPageId="3" captionText="FIGURE 2. Nephrococcus colonies from natural material: a = 2-celled stadium with yellow-brown cells and cell envelopes; b = oval, yellow-brown cells aggregated in the centre of the colony; c = yellowish, irregularly rounded cells nearly arranged in the form of a wreath; d = olive-green to yellowish, irregularly rounded cells nearly arranged in the form of a wreath; e = blue-green kidney-shaped cells arranged in a wreath formation; f = blue-green kidney-shaped cells arranged in a wreath formation, with wreaths placed opposite one another; g, h = probably resting cells. Scale bar: 10 μm." figureDoi="http://doi.org/10.5281/zenodo.13644456" httpUri="https://zenodo.org/record/13644456/files/figure.png" pageId="4" pageNumber="139">Fig. 2e, f</figureCitation>
|
||
), olive-green (
|
||
<figureCitation id="73962A2FFFEEFF86FF3760D6FF58FA3D" box="[144,226,1434,1459]" captionStart="FIGURE 2" captionStartId="3.[136,229,1881,1902]" captionTargetBox="[189,1398,821,1855]" captionTargetId="figure-284@3.[189,1398,821,1855]" captionTargetPageId="3" captionText="FIGURE 2. Nephrococcus colonies from natural material: a = 2-celled stadium with yellow-brown cells and cell envelopes; b = oval, yellow-brown cells aggregated in the centre of the colony; c = yellowish, irregularly rounded cells nearly arranged in the form of a wreath; d = olive-green to yellowish, irregularly rounded cells nearly arranged in the form of a wreath; e = blue-green kidney-shaped cells arranged in a wreath formation; f = blue-green kidney-shaped cells arranged in a wreath formation, with wreaths placed opposite one another; g, h = probably resting cells. Scale bar: 10 μm." figureDoi="http://doi.org/10.5281/zenodo.13644456" httpUri="https://zenodo.org/record/13644456/files/figure.png" pageId="4" pageNumber="139">Fig. 2d</figureCitation>
|
||
) to yellowish (
|
||
<figureCitation id="73962A2FFFEEFF86FE2E60D6FE62FA3D" box="[393,472,1434,1459]" captionStart="FIGURE 2" captionStartId="3.[136,229,1881,1902]" captionTargetBox="[189,1398,821,1855]" captionTargetId="figure-284@3.[189,1398,821,1855]" captionTargetPageId="3" captionText="FIGURE 2. Nephrococcus colonies from natural material: a = 2-celled stadium with yellow-brown cells and cell envelopes; b = oval, yellow-brown cells aggregated in the centre of the colony; c = yellowish, irregularly rounded cells nearly arranged in the form of a wreath; d = olive-green to yellowish, irregularly rounded cells nearly arranged in the form of a wreath; e = blue-green kidney-shaped cells arranged in a wreath formation; f = blue-green kidney-shaped cells arranged in a wreath formation, with wreaths placed opposite one another; g, h = probably resting cells. Scale bar: 10 μm." figureDoi="http://doi.org/10.5281/zenodo.13644456" httpUri="https://zenodo.org/record/13644456/files/figure.png" pageId="4" pageNumber="139">Fig. 2c</figureCitation>
|
||
) and yellow-brown (
|
||
<figureCitation id="73962A2FFFEEFF86FD6560D6FCACFA3D" box="[706,790,1434,1459]" captionStart="FIGURE 2" captionStartId="3.[136,229,1881,1902]" captionTargetBox="[189,1398,821,1855]" captionTargetId="figure-284@3.[189,1398,821,1855]" captionTargetPageId="3" captionText="FIGURE 2. Nephrococcus colonies from natural material: a = 2-celled stadium with yellow-brown cells and cell envelopes; b = oval, yellow-brown cells aggregated in the centre of the colony; c = yellowish, irregularly rounded cells nearly arranged in the form of a wreath; d = olive-green to yellowish, irregularly rounded cells nearly arranged in the form of a wreath; e = blue-green kidney-shaped cells arranged in a wreath formation; f = blue-green kidney-shaped cells arranged in a wreath formation, with wreaths placed opposite one another; g, h = probably resting cells. Scale bar: 10 μm." figureDoi="http://doi.org/10.5281/zenodo.13644456" httpUri="https://zenodo.org/record/13644456/files/figure.png" pageId="4" pageNumber="139">Fig. 2b</figureCitation>
|
||
). The cell content is homogeneous or slightly granular. The cell envelopes are visible only in 2-celled stadiums (
|
||
<figureCitation id="73962A2FFFEEFF86FD7660F2FC99FA59" box="[721,803,1470,1495]" captionStart="FIGURE 2" captionStartId="3.[136,229,1881,1902]" captionTargetBox="[189,1398,821,1855]" captionTargetId="figure-284@3.[189,1398,821,1855]" captionTargetPageId="3" captionText="FIGURE 2. Nephrococcus colonies from natural material: a = 2-celled stadium with yellow-brown cells and cell envelopes; b = oval, yellow-brown cells aggregated in the centre of the colony; c = yellowish, irregularly rounded cells nearly arranged in the form of a wreath; d = olive-green to yellowish, irregularly rounded cells nearly arranged in the form of a wreath; e = blue-green kidney-shaped cells arranged in a wreath formation; f = blue-green kidney-shaped cells arranged in a wreath formation, with wreaths placed opposite one another; g, h = probably resting cells. Scale bar: 10 μm." figureDoi="http://doi.org/10.5281/zenodo.13644456" httpUri="https://zenodo.org/record/13644456/files/figure.png" pageId="4" pageNumber="139">Fig. 2a</figureCitation>
|
||
), and later are not visible or not present. The cell length is 3–6.5 μm, with the cell width in the middle part being 1.5–4 μm.
|
||
</paragraph>
|
||
<paragraph id="EB1236AAFFEEFF86FF1A634AFE78F921" blockId="4.[136,1452,1002,1999]" pageId="4" pageNumber="139">
|
||
CLM (
|
||
<figureCitation id="73962A2FFFEEFF86FEA9634AFEECF991" box="[270,342,1542,1567]" captionStart="FIGURE 4" captionStartId="5.[136,229,2024,2045]" captionTargetBox="[189,1398,630,1998]" captionTargetId="figure-82@5.[189,1398,630,1998]" captionTargetPageId="5" captionText="FIGURE 4. CLM of Nephrococcus showing the 3D spatial organization of cells in the Nephrococcus colony, with a series of thin optical sections of the sample (a–l)." figureDoi="http://doi.org/10.5281/zenodo.13644460" httpUri="https://zenodo.org/record/13644460/files/figure.png" pageId="4" pageNumber="139">Fig. 4</figureCitation>
|
||
) turned out to be a good technique for visualizing the 3D spatial organization of cells in the
|
||
<taxonomicName id="2CAD4D29FFEEFF86FF2F6366FE9DF9CD" authorityName="Y.-Y.Li" authorityYear="1984" box="[136,295,1578,1603]" class="Cyanobacteriia" family="Chroococcaceae" genus="Nephrococcus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="4" pageNumber="139" phylum="Cyanobacteria" rank="genus">
|
||
<emphasis id="D9D9EAB8FFEEFF86FF2F6366FE9DF9CD" box="[136,295,1578,1603]" italics="true" pageId="4" pageNumber="139">Nephrococcus</emphasis>
|
||
</taxonomicName>
|
||
colony, using propidium iodide that binds with nucleic acids. Without disturbing the structure, a series of thin optical sections of the sample-Optic 2D images obtained at different intervals: a–l-was made. Cells are arranged irregularly at the centre of the colony (a–l) or in the form of a wreath (m–n). Slight lamellation of the colony envelope is clearly evident in
|
||
<figureCitation id="73962A2FFFEEFF86FECC63DAFE04F921" box="[363,446,1686,1711]" captionStart="FIGURE 4" captionStartId="5.[136,229,2024,2045]" captionTargetBox="[189,1398,630,1998]" captionTargetId="figure-82@5.[189,1398,630,1998]" captionTargetPageId="5" captionText="FIGURE 4. CLM of Nephrococcus showing the 3D spatial organization of cells in the Nephrococcus colony, with a series of thin optical sections of the sample (a–l)." figureDoi="http://doi.org/10.5281/zenodo.13644460" httpUri="https://zenodo.org/record/13644460/files/figure.png" pageId="4" pageNumber="139">
|
||
Fig.
|
||
<specimenCount id="FDABFD23FFEEFF86FE3863DAFE04F921" box="[415,446,1686,1711]" count="4" pageId="4" pageNumber="139" type="generic">4n</specimenCount>
|
||
</figureCitation>
|
||
.
|
||
</paragraph>
|
||
<paragraph id="EB1236AAFFEEFF86FF1A63F6FC83F95D" blockId="4.[136,1452,1002,1999]" box="[189,825,1722,1747]" pageId="4" pageNumber="139">
|
||
Drawings of
|
||
<taxonomicName id="2CAD4D29FFEEFF86FEF763F6FDE9F95D" authorityName="S. Popovic, G. Subakov Simic & Komarek" authorityYear="2016" box="[336,595,1722,1747]" class="Cyanobacteriia" family="Chroococcaceae" genus="Nephrococcus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="4" pageNumber="139" phylum="Cyanobacteria" rank="species" species="serbicus">
|
||
<emphasis id="D9D9EAB8FFEEFF86FEF763F6FDE9F95D" box="[336,595,1722,1747]" italics="true" pageId="4" pageNumber="139">Nephrococcus serbicus</emphasis>
|
||
</taxonomicName>
|
||
are shown in
|
||
<figureCitation id="73962A2FFFEEFF86FD5763F6FC89F95D" box="[752,819,1722,1747]" captionStart="FIGURE 5" captionStartId="6.[136,229,1752,1773]" captionTargetBox="[183,1384,206,1728]" captionTargetId="figure-13@6.[151,1436,190,1728]" captionTargetPageId="6" captionText="FIGURE 5. The drawings of Nephrococcus serbicus: a = probably the resting cell; b = 2-celled stadium; c = 4-celled stadium; d = 8-celled stadium; e = many-celled stadium; f = wreath formation. Scale bar: 10 μm." figureDoi="http://doi.org/10.5281/zenodo.13644462" httpUri="https://zenodo.org/record/13644462/files/figure.png" pageId="4" pageNumber="139">Fig. 5</figureCitation>
|
||
.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="A3B76521FFEEFF86FF1A6392FC63F979" box="[189,985,1758,1783]" pageId="4" pageNumber="139" type="etymology">
|
||
<paragraph id="EB1236AAFFEEFF86FF1A6392FC63F979" blockId="4.[136,1452,1002,1999]" box="[189,985,1758,1783]" pageId="4" pageNumber="139">
|
||
<emphasis id="D9D9EAB8FFEEFF86FF1A6392FE84F979" bold="true" box="[189,318,1758,1783]" pageId="4" pageNumber="139">Etymology</emphasis>
|
||
:—The epithet indicates that this species is found in
|
||
<collectingCountry id="93BA763AFFEEFF86FC2D6392FC6FF979" box="[906,981,1758,1783]" name="Serbia" pageId="4" pageNumber="139">Serbia</collectingCountry>
|
||
.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="A3B76521FFEEFF8AFF1A624EFD31FF57" lastPageId="8" lastPageNumber="143" pageId="4" pageNumber="139" type="biology_ecology">
|
||
<paragraph id="EB1236AAFFEEFF86FF1A624EFEF9F841" blockId="4.[136,1452,1002,1999]" pageId="4" pageNumber="139">
|
||
<emphasis id="D9D9EAB8FFEEFF86FF1A624EFEA6F895" bold="true" box="[189,284,1794,1819]" pageId="4" pageNumber="139">Ecology</emphasis>
|
||
:—This aerophytic cyanobacterium was found in the subaerophytic, wet, stony (limestone) substrates of Božana Cave (near the entrance), at an elevation of
|
||
<quantity id="2C559B4FFFEEFF86FD5E626AFCF9F8B1" box="[761,835,1830,1855]" metricMagnitude="2" metricUnit="m" metricValue="7.2299999999999995" pageId="4" pageNumber="139" unit="m" value="723.0">723 m</quantity>
|
||
, in western
|
||
<collectingCountry id="93BA763AFFEEFF86FC69626AFBACF8B1" box="[974,1046,1830,1855]" name="Serbia" pageId="4" pageNumber="139">Serbia</collectingCountry>
|
||
during the summer period of 2014. Measured environmental parameters from the sampling site and parameters from the biofilm containing
|
||
<taxonomicName id="2CAD4D29FFEEFF86FAAB6206FA11F8ED" authorityName="Y.-Y.Li" authorityYear="1984" box="[1292,1451,1866,1891]" class="Cyanobacteriia" family="Chroococcaceae" genus="Nephrococcus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="4" pageNumber="139" phylum="Cyanobacteria" rank="genus">
|
||
<emphasis id="D9D9EAB8FFEEFF86FAAB6206FA11F8ED" box="[1292,1451,1866,1891]" italics="true" pageId="4" pageNumber="139">Nephrococcus</emphasis>
|
||
</taxonomicName>
|
||
are shown in
|
||
<tableCitation id="A62F0311FFEEFF86FE8F6222FE3AF809" box="[296,384,1902,1927]" captionStart="TABLE 1" captionStartId="5.[136,216,160,181]" captionText="TABLE 1. Measured parameters from sampling site and biofilm containing Nephrococcus." pageId="4" pageNumber="139">Table 1</tableCitation>
|
||
. The sampling site was relatively close to the entrance and T, RH and LI were, in general, influenced by the external climatic conditions. The biofilm was moderately wet, with a lot more inorganic than organic matter (
|
||
<tableCitation id="A62F0311FFEEFF86FF7962FAFE88F841" box="[222,306,1974,1999]" captionStart="TABLE 1" captionStartId="5.[136,216,160,181]" captionText="TABLE 1. Measured parameters from sampling site and biofilm containing Nephrococcus." pageId="4" pageNumber="139">Table 1</tableCitation>
|
||
).
|
||
</paragraph>
|
||
<caption id="BFD26622FFEFFF87FF2F65ECFC49FF3B" box="[136,1011,160,181]" pageId="5" pageNumber="140" startId="5.[136,216,160,181]" targetType="table">
|
||
<paragraph id="EB1236AAFFEFFF87FF2F65ECFC49FF3B" blockId="5.[136,1011,160,181]" box="[136,1011,160,181]" pageId="5" pageNumber="140">
|
||
<emphasis id="D9D9EAB8FFEFFF87FF2F65ECFF50FF3B" bold="true" box="[136,234,160,181]" pageId="5" pageNumber="140">TABLE 1</emphasis>
|
||
. Measured parameters from sampling site and biofilm containing
|
||
<taxonomicName id="2CAD4D29FFEFFF87FCC365ECFC56FF3B" authorityName="Y.-Y.Li" authorityYear="1984" box="[868,1004,160,181]" class="Cyanobacteriia" family="Chroococcaceae" genus="Nephrococcus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="5" pageNumber="140" phylum="Cyanobacteria" rank="genus">
|
||
<emphasis id="D9D9EAB8FFEFFF87FCC365ECFC56FF3B" box="[868,1004,160,181]" italics="true" pageId="5" pageNumber="140">Nephrococcus</emphasis>
|
||
</taxonomicName>
|
||
.
|
||
</paragraph>
|
||
</caption>
|
||
<paragraph id="EB1236AAFFEFFF87FF306587FBE9FDD9" pageId="5" pageNumber="140">
|
||
<table id="99ADC40AFFEF007DFF306587FBE9FDD9" box="[151,1107,203,599]" gridcols="2" gridrows="9" pageId="5" pageNumber="140">
|
||
<tr id="559D34E8FFEF007DFF306587FBE9FF6E" box="[151,1107,203,224]" gridrow="0" pageId="5" pageNumber="140">
|
||
<th id="164C5D94FFEF007DFF306587FE71FF6E" box="[151,459,203,224]" gridcol="0" gridrow="0" pageId="5" pageNumber="140">Parameter</th>
|
||
<th id="164C5D94FFEF007DFCB66587FBE9FF6E" box="[785,1107,203,224]" gridcol="1" gridrow="0" pageId="5" pageNumber="140">Value/appearance</th>
|
||
</tr>
|
||
<tr id="559D34E8FFEF007DFF3065B5FBE9FE81" box="[151,1107,249,271]" gridrow="1" pageId="5" pageNumber="140">
|
||
<td id="164C5D94FFEF007DFF3065B5FE71FE81" box="[151,459,249,271]" gridcol="0" gridrow="1" pageId="5" pageNumber="140">T (˚C)</td>
|
||
<td id="164C5D94FFEF007DFCB665B5FBE9FE81" box="[785,1107,249,271]" gridcol="1" gridrow="1" pageId="5" pageNumber="140">19.8 ± 0.09</td>
|
||
</tr>
|
||
<tr id="559D34E8FFEF007DFF306464FBE9FEB3" box="[151,1107,296,317]" gridrow="2" pageId="5" pageNumber="140">
|
||
<td id="164C5D94FFEF007DFF306464FE71FEB3" box="[151,459,296,317]" gridcol="0" gridrow="2" pageId="5" pageNumber="140">RH (%)</td>
|
||
<td id="164C5D94FFEF007DFCB66464FBE9FEB3" box="[785,1107,296,317]" gridcol="1" gridrow="2" pageId="5" pageNumber="140">79 ± 3</td>
|
||
</tr>
|
||
<tr id="559D34E8FFEF007DFF30641BFBE9FEE2" box="[151,1107,343,364]" gridrow="3" pageId="5" pageNumber="140">
|
||
<td id="164C5D94FFEF007DFF30641BFE71FEE2" box="[151,459,343,364]" gridcol="0" gridrow="3" pageId="5" pageNumber="140">LI (Lux)</td>
|
||
<td id="164C5D94FFEF007DFCB6641BFBE9FEE2" box="[785,1107,343,364]" gridcol="1" gridrow="3" pageId="5" pageNumber="140">571 ± 5</td>
|
||
</tr>
|
||
<td id="164C5D94FFEF007DFCB664C9FBE9FE15" box="[785,1107,389,411]" gridcol="1" gridrow="4" pageId="5" pageNumber="140">4.27</td>
|
||
<td id="164C5D94FFEF007DFCB664F9FBE9FE44" box="[785,1107,437,458]" gridcol="1" gridrow="5" pageId="5" pageNumber="140">35.07</td>
|
||
<td id="164C5D94FFEF007DFCB664A8FBE9FE77" box="[785,1107,484,505]" gridcol="1" gridrow="6" pageId="5" pageNumber="140">6.68</td>
|
||
<td id="164C5D94FFEF007DFCB6675FFBE9FDA6" box="[785,1107,531,552]" gridcol="1" gridrow="7" pageId="5" pageNumber="140">58.23</td>
|
||
<tr id="559D34E8FFEF007DFF30670EFBE9FDD9" box="[151,1107,578,599]" gridrow="8" pageId="5" pageNumber="140">
|
||
<td id="164C5D94FFEF007DFF30670EFE71FDD9" box="[151,459,578,599]" gridcol="0" gridrow="8" pageId="5" pageNumber="140">Biofilm colour</td>
|
||
<td id="164C5D94FFEF007DFCB6670EFBE9FDD9" box="[785,1107,578,599]" gridcol="1" gridrow="8" pageId="5" pageNumber="140">Blackish, green with yellow parts</td>
|
||
</tr>
|
||
</table>
|
||
</paragraph>
|
||
<caption id="BFD26622FFEFFF87FF2F62A4FE2DF7AF" ID-DOI="http://doi.org/10.5281/zenodo.13644460" ID-Zenodo-Dep="13644460" httpUri="https://zenodo.org/record/13644460/files/figure.png" pageId="5" pageNumber="140" startId="5.[136,229,2024,2045]" targetBox="[189,1398,630,1998]" targetPageId="5" targetType="figure">
|
||
<paragraph id="EB1236AAFFEFFF87FF2F62A4FE2DF7AF" blockId="5.[136,1451,2024,2081]" pageId="5" pageNumber="140">
|
||
<emphasis id="D9D9EAB8FFEFFF87FF2F62A4FF47F873" bold="true" box="[136,253,2024,2045]" pageId="5" pageNumber="140">FIGURE 4.</emphasis>
|
||
CLM of
|
||
<taxonomicName id="2CAD4D29FFEFFF87FEF062A4FE65F873" authorityName="Y.-Y.Li" authorityYear="1984" box="[343,479,2024,2045]" class="Cyanobacteriia" family="Chroococcaceae" genus="Nephrococcus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="5" pageNumber="140" phylum="Cyanobacteria" rank="genus">
|
||
<emphasis id="D9D9EAB8FFEFFF87FEF062A4FE65F873" box="[343,479,2024,2045]" italics="true" pageId="5" pageNumber="140">Nephrococcus</emphasis>
|
||
</taxonomicName>
|
||
showing the 3D spatial organization of cells in the
|
||
<taxonomicName id="2CAD4D29FFEFFF87FC6A62A4FBEFF873" authorityName="Y.-Y.Li" authorityYear="1984" box="[973,1109,2024,2045]" class="Cyanobacteriia" family="Chroococcaceae" genus="Nephrococcus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="5" pageNumber="140" phylum="Cyanobacteria" rank="genus">
|
||
<emphasis id="D9D9EAB8FFEFFF87FC6A62A4FBEFF873" box="[973,1109,2024,2045]" italics="true" pageId="5" pageNumber="140">Nephrococcus</emphasis>
|
||
</taxonomicName>
|
||
colony, with a series of thin optical sections of the sample (a–l).
|
||
</paragraph>
|
||
</caption>
|
||
<caption id="BFD26622FFECFF84FF2F6394FCE2F89F" ID-DOI="http://doi.org/10.5281/zenodo.13644462" ID-Zenodo-Dep="13644462" httpUri="https://zenodo.org/record/13644462/files/figure.png" pageId="6" pageNumber="141" startId="6.[136,229,1752,1773]" targetBox="[183,1384,206,1728]" targetPageId="6" targetType="figure">
|
||
<paragraph id="EB1236AAFFECFF84FF2F6394FCE2F89F" blockId="6.[136,1452,1752,1809]" pageId="6" pageNumber="141">
|
||
<emphasis id="D9D9EAB8FFECFF84FF2F6394FF47F963" bold="true" box="[136,253,1752,1773]" pageId="6" pageNumber="141">FIGURE 5.</emphasis>
|
||
The drawings of
|
||
<taxonomicName id="2CAD4D29FFECFF84FE056394FDC5F963" authorityName="S. Popovic, G. Subakov Simic & Komarek" authorityYear="2016" box="[418,639,1752,1773]" class="Cyanobacteriia" family="Chroococcaceae" genus="Nephrococcus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="6" pageNumber="141" phylum="Cyanobacteria" rank="species" species="serbicus">
|
||
<emphasis id="D9D9EAB8FFECFF84FE056394FDC5F963" box="[418,639,1752,1773]" italics="true" pageId="6" pageNumber="141">Nephrococcus serbicus</emphasis>
|
||
</taxonomicName>
|
||
: a = probably the resting cell; b = 2-celled stadium; c = 4-celled stadium; d = 8-celled stadium; e = many-celled stadium; f = wreath formation. Scale bar: 10 μm.
|
||
</paragraph>
|
||
</caption>
|
||
<paragraph id="EB1236AAFFECFF85FF1A620EFEFDFE8F" blockId="6.[136,1452,1858,2063]" lastBlockId="7.[136,1452,160,581]" lastPageId="7" lastPageNumber="142" pageId="6" pageNumber="141">
|
||
<emphasis id="D9D9EAB8FFECFF84FF1A620EFD63F8D5" bold="true" box="[189,729,1858,1883]" pageId="6" pageNumber="141">Associated taxa and additional information</emphasis>
|
||
:—Other cyanobacterial taxa found in the biofilm containing
|
||
<taxonomicName id="2CAD4D29FFECFF84FF2F622AFE9DF8F1" authorityName="Y.-Y.Li" authorityYear="1984" box="[136,295,1894,1919]" class="Cyanobacteriia" family="Chroococcaceae" genus="Nephrococcus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="6" pageNumber="141" phylum="Cyanobacteria" rank="genus">
|
||
<emphasis id="D9D9EAB8FFECFF84FF2F622AFE9DF8F1" box="[136,295,1894,1919]" italics="true" pageId="6" pageNumber="141">Nephrococcus</emphasis>
|
||
</taxonomicName>
|
||
were
|
||
<taxonomicName id="2CAD4D29FFECFF84FED4622AFDF1F8F1" box="[371,587,1894,1919]" class="Cyanobacteriia" family="Microcystaceae" genus="Asterocapsa" kingdom="Bacteria" order="Cyanobacteriales" pageId="6" pageNumber="141" phylum="Cyanobacteria" rank="species" species="undefined-H">
|
||
<emphasis id="D9D9EAB8FFECFF84FED4622AFE46F8F1" box="[371,508,1894,1919]" italics="true" pageId="6" pageNumber="141">Asterocapsa</emphasis>
|
||
sp. H
|
||
</taxonomicName>
|
||
.-J.
|
||
<bibRefCitation id="8F3C4B5BFFECFF84FDD3622AFCE3F8F1" author="Chu, H. - J." box="[628,857,1894,1919]" pageId="6" pageNumber="141" pagination="96 - 101" refId="ref5698" refString="Chu, H. - J. (1952) Some new Myxophyceae from Szechwan province, China. Ohio Journal of Science 52: 96 - 101." type="journal article" year="1952">Chu (1952: 97–100</bibRefCitation>
|
||
; pl. 1, figs 1–3, pl. 2, figs 8, 9, 14),
|
||
<taxonomicName id="2CAD4D29FFECFF84FAB4622AFD10F82D" authority="(Meneghini 1843) Wille (1919: 39" authorityName="Wille" authorityYear="1919" baseAuthorityName="Meneghini" baseAuthorityYear="1843" class="Cyanophyceae" family="Chroococcaceae" genus="Aphanocapsa" kingdom="Bacteria" order="Chroococcales" pageId="6" pageNumber="141" phylum="Cyanobacteria" rank="species" species="muscicola">
|
||
<emphasis id="D9D9EAB8FFECFF84FAB4622AFF40F82D" italics="true" pageId="6" pageNumber="141">Aphanocapsa muscicola</emphasis>
|
||
(
|
||
<bibRefCitation id="8F3C4B5BFFECFF84FEA862C6FE68F82D" author="Meneghini, G." box="[271,466,1930,1955]" pageId="6" pageNumber="141" pagination="256 - 352" refId="ref6305" refString="Meneghini, G. (1843) Alghe Italiane e Dalmatiche. Fascicle IV. Angelo Sicca, Padua, pp. 256 - 352." type="book chapter" year="1843">Meneghini 1843</bibRefCitation>
|
||
)
|
||
<bibRefCitation id="8F3C4B5BFFECFF84FE4F62C6FD10F82D" author="Wille, N." box="[488,682,1930,1955]" pageId="6" pageNumber="141" pagination="1 - 60" refId="ref6723" refString="Wille, N. (1919) Algologische Notizen XXV - XXIX. Nyt Magazin for Naturvidenskaberne 56: 1 - 60." type="journal article" year="1919">Wille (1919: 39</bibRefCitation>
|
||
</taxonomicName>
|
||
; pl. I, II)
|
||
<taxonomicName id="2CAD4D29FFECFF84FC9562C6FA1CF82D" authority="P. G. Richter (1880: 192)" authorityName="P. G. Richter" authorityPageNumber="192" authorityYear="1880" box="[818,1446,1930,1955]" class="Cyanophyceae" family="Chroococcaceae" genus="Aphanothece" kingdom="Bacteria" order="Chroococcales" pageId="6" pageNumber="141" phylum="Cyanobacteria" rank="species" species="caldariorum">
|
||
<emphasis id="D9D9EAB8FFECFF84FC9562C6FBE5F82D" box="[818,1119,1930,1955]" italics="true" pageId="6" pageNumber="141">Aphanothece caldariorum</emphasis>
|
||
P. G.
|
||
<bibRefCitation id="8F3C4B5BFFECFF84FB1E62C6FA1CF82D" author="Richter, P. G." box="[1209,1446,1930,1955]" pageId="6" pageNumber="141" pagination="191 - 196" refId="ref6479" refString="Richter, P. G. (1880) Zur Frage uber die moglichen genetischen Verwandtschaftsverhaltnisse einiger einzelligen Phycochromaceen. Hedwigia 19: 191 - 196." type="journal article" year="1880">Richter (1880: 192)</bibRefCitation>
|
||
</taxonomicName>
|
||
,
|
||
<taxonomicName id="2CAD4D29FFECFF84FF2F62E2FCF1F849" authority="Komarek & Anagnostidis (1995: 17" authorityName="Komarek & Anagnostidis" authorityYear="1995" box="[136,843,1966,1991]" class="Cyanophyceae" family="Chroococcaceae" genus="Chroococcus" kingdom="Bacteria" order="Chroococcales" pageId="6" pageNumber="141" phylum="Cyanobacteria" rank="species" species="ercegovicii">
|
||
<emphasis id="D9D9EAB8FFECFF84FF2F62E2FE1AF849" box="[136,416,1966,1991]" italics="true" pageId="6" pageNumber="141">Chroococcus ercegovicii</emphasis>
|
||
<bibRefCitation id="8F3C4B5BFFECFF84FE0D62E2FCF1F849" author="Komarek, J. & Anagnostidis, K." box="[426,843,1966,1991]" pageId="6" pageNumber="141" pagination="15 - 23" refId="ref5762" refString="Komarek, J. & Anagnostidis, K. (1995) Nomenclatural novelties in chroococcalean cyanoprokaryotes. Preslia 67: 15 - 23." type="journal article" year="1995">Komárek & Anagnostidis (1995: 17</bibRefCitation>
|
||
</taxonomicName>
|
||
; figs 1, 3),
|
||
<taxonomicName id="2CAD4D29FFECFF84FC7162E2FAB8F849" authority="Nageli" authorityName="Nageli" box="[982,1282,1966,1991]" class="Cyanophyceae" family="Chroococcaceae" genus="Gloeocapsa" kingdom="Bacteria" order="Chroococcales" pageId="6" pageNumber="141" phylum="Cyanobacteria" rank="species" species="alpina">
|
||
<emphasis id="D9D9EAB8FFECFF84FC7162E2FB17F849" box="[982,1197,1966,1991]" italics="true" pageId="6" pageNumber="141">Gloeocapsa alpina</emphasis>
|
||
Nägeli
|
||
</taxonomicName>
|
||
in
|
||
<bibRefCitation id="8F3C4B5BFFECFF84FA8B62E2FEBEF865" author="Rabenhorst, L." pageId="6" pageNumber="141" refId="ref6448" refString="Rabenhorst, L. (1865) Flora europaea algarum aquae dulcis et submarinae. Sectio II. Algas phycochromaceas complectens. Apud Eduardum Kummerum, Leipzig, 319 pp." type="book" year="1865">Rabenhorst (1865: 40)</bibRefCitation>
|
||
,
|
||
<taxonomicName id="2CAD4D29FFECFF84FEB3629EFD5CF865" authority="Kutzing (1847: 25" authorityName="Kutzing" authorityYear="1847" box="[276,742,2002,2027]" class="Cyanophyceae" family="Chroococcaceae" genus="Gloeocapsa" kingdom="Bacteria" order="Chroococcales" pageId="6" pageNumber="141" phylum="Cyanobacteria" rank="species" species="violacea">
|
||
<emphasis id="D9D9EAB8FFECFF84FEB3629EFDB9F865" box="[276,515,2002,2027]" italics="true" pageId="6" pageNumber="141">Gloeocapsa violacea</emphasis>
|
||
<bibRefCitation id="8F3C4B5BFFECFF84FDA9629EFD5CF865" author="Kutzing, F. T." box="[526,742,2002,2027]" pageId="6" pageNumber="141" refId="ref6096" refString="Kutzing, F. T. (1847) Tabulae phycologicae. Oder: Abbildungen der Tange. I Band. Gedruckt auf Kosten des Verfassers (in Commission bei W. Kohne), Nordhausen, 160 pp." type="book" year="1847">Kützing (1847: 25</bibRefCitation>
|
||
</taxonomicName>
|
||
; pl. 36, fig. IX),
|
||
<taxonomicName id="2CAD4D29FFECFF84FC11629EFBCFF865" box="[950,1141,2002,2027]" class="Cyanophyceae" family="Chroococcaceae" genus="Gloeocapsa" kingdom="Bacteria" order="Chroococcales" pageId="6" pageNumber="141" phylum="Cyanobacteria" rank="species" species="undetermined">
|
||
<emphasis id="D9D9EAB8FFECFF84FC11629EFB86F865" box="[950,1084,2002,2027]" italics="true" pageId="6" pageNumber="141">Gloeocapsa</emphasis>
|
||
spp.
|
||
</taxonomicName>
|
||
<bibRefCitation id="8F3C4B5BFFECFF84FB27629EFA1DF865" author="Kutzing, F. T." box="[1152,1447,2002,2027]" pageId="6" pageNumber="141" refId="ref6136" refString="Kutzing, F. T. (1843) Phycologia generalis. Oder: Anatomie, Physiologie und Systemkunde der Tange. F. A. Brockhaus, Leipzig, 664 pp." type="book" year="1843">Kützing (1843: 173–175)</bibRefCitation>
|
||
,
|
||
<taxonomicName id="2CAD4D29FFECFF84FF2F62BAFEC8F781" box="[136,370,2038,2063]" class="Cyanophyceae" family="Chroococcaceae" genus="Gloeothece" kingdom="Bacteria" order="Chroococcales" pageId="6" pageNumber="141" phylum="Cyanobacteria" rank="species" species="rupestris">
|
||
<emphasis id="D9D9EAB8FFECFF84FF2F62BAFEC8F781" box="[136,370,2038,2063]" italics="true" pageId="6" pageNumber="141">Gloeothece rupestris</emphasis>
|
||
</taxonomicName>
|
||
(
|
||
<bibRefCitation id="8F3C4B5BFFECFF84FE2762BAFDE4F781" author="Lyngbye, H. C." box="[384,606,2038,2063]" pageId="6" pageNumber="141" refId="ref6202" refString="Lyngbye, H. C. (1819) Tentamen hydrophytologiae danicae. Omnia hydrophyta cryptogama. Daniae, Holsatiae, Faeroae, Islandiae, Groenlandiae. Systematice disposita, descripta et iconibus illustrata, adjectis simul speciebus Norvegicis. Schultzianis in commissis Librariae Gyldendaliae, 436 pp." type="book" year="1819">Lyngbye 1819: 207</bibRefCitation>
|
||
; pl. 69) Bornet in
|
||
<bibRefCitation id="8F3C4B5BFFECFF84FC8F62BAFB12F781" author="Wittrock, V. B. & Nordstedt, C. F. O." box="[808,1192,2038,2063]" pageId="6" pageNumber="141" pagination="301 - 350" refId="ref6746" refString="Wittrock, V. B. & Nordstedt, C. F. O. (1880) Algae aquae dulcis exsiccatae. Fasc. 7. Lund, pp. 301 - 350." type="book chapter" year="1880">Wittrock & Nordstedt (1880: 339)</bibRefCitation>
|
||
,
|
||
<taxonomicName id="2CAD4D29FFECFF84FB1362BAFAE0F781" box="[1204,1370,2038,2063]" class="Cyanophyceae" family="Chroococcaceae" genus="Gloeothece" kingdom="Bacteria" order="Chroococcales" pageId="6" pageNumber="141" phylum="Cyanobacteria" rank="species" species="undetermined">
|
||
<emphasis id="D9D9EAB8FFECFF84FB1362BAFA8EF781" box="[1204,1332,2038,2063]" italics="true" pageId="6" pageNumber="141">Gloeothece</emphasis>
|
||
sp.
|
||
</taxonomicName>
|
||
<bibRefCitation id="8F3C4B5BFFECFF85FAC662BAFE91FF37" author="Nageli, C." lastPageId="7" lastPageNumber="142" pageId="6" pageNumber="141" refId="ref6331" refString="Nageli, C. (1849) Gattungen einzelliger Algen, physiologisch und systematisch bearbeitet. Zurich, 166 pp. https: // doi. org / 10.5962 / bhl. title. 6805" type="book" year="1849">Nägeli (1849: 57–60)</bibRefCitation>
|
||
,
|
||
<taxonomicName id="2CAD4D29FFEDFF85FE9065ECFDEDFF37" box="[311,599,160,185]" class="Cyanophyceae" family="Oscillatoriaceae" genus="Leptolyngbya" kingdom="Bacteria" order="Nostocales" pageId="7" pageNumber="142" phylum="Cyanobacteria" rank="species" species="foveolarum">
|
||
<emphasis id="D9D9EAB8FFEDFF85FE9065ECFDEDFF37" box="[311,599,160,185]" italics="true" pageId="7" pageNumber="142">Leptolyngbya foveolarum</emphasis>
|
||
</taxonomicName>
|
||
(Gomont 1892: 164, pl. IV/4, fig. 16;
|
||
<bibRefCitation id="8F3C4B5BFFEDFF85FBAF65ECFA19FF37" author="Anagnostidis, K. & Komarek, J." box="[1032,1443,160,185]" pageId="7" pageNumber="142" pagination="327 - 472" refId="ref5557" refString="Anagnostidis, K. & Komarek, J. (1988) Modern approach to the classification system of cyanophytes. 3 - Oscillatoriales. Archiv fur Hydrobiologie 80: 327 - 472." type="journal article" year="1988">Anagnostidis & Komárek 1988: 391</bibRefCitation>
|
||
) and
|
||
<taxonomicName id="2CAD4D29FFEDFF85FF1F6588FEC8FF53" box="[184,370,196,221]" class="Cyanophyceae" family="Scytonemataceae" genus="Scytonema" kingdom="Bacteria" order="Nostocales" pageId="7" pageNumber="142" phylum="Cyanobacteria" rank="species" species="undefined-C">
|
||
<emphasis id="D9D9EAB8FFEDFF85FF1F6588FE8BFF53" box="[184,305,196,221]" italics="true" pageId="7" pageNumber="142">Scytonema</emphasis>
|
||
sp. C
|
||
</taxonomicName>
|
||
.Agardh ex É.Bornet & C.Flahault (1886: 85–115). Besides mosses, one unidentified green alga was also present.
|
||
</paragraph>
|
||
<paragraph id="EB1236AAFFEDFF85FF1A6440FAB9FDCB" blockId="7.[136,1452,160,581]" pageId="7" pageNumber="142">
|
||
The first axis of the performed CCA (
|
||
<figureCitation id="73962A2FFFEDFF85FD216440FD75FEAB" box="[646,719,268,293]" captionStart="FIGURE 6" captionStartId="7.[136,229,1694,1715]" captionTargetBox="[173,1389,673,1635]" captionTargetId="figure-217@7.[151,1436,641,1669]" captionTargetPageId="7" captionText="FIGURE 6. CCA of cyanobacterial and algal taxa found in Božana Cave, with T, RH and LI as explanatory variables and sampling sites (S1–S8), chlorophyll-a (expressed as μg/cm2), the water content and the content of organic/inorganic matter (expressed as mg/cm2) as supplementary variables." figureDoi="http://doi.org/10.5281/zenodo.13644464" httpUri="https://zenodo.org/record/13644464/files/figure.png" pageId="7" pageNumber="142">Fig. 6</figureCitation>
|
||
) showed positive correlation with LI (r=0.6682) and negative correlation with T (r=−0.6151). The second CCA axis also showed a positive correlation with LI (r=0.5640) and a slightly negative correlation with RH (r=−0.3347). The eigenvalue of the first CCA axis was 0.7173 indicating that most of the ecological information was reflected on this axis, but a significant part of the variability was also explained by the second axis (eigenvalue 0.5514). According to CCA, the sampling site containing
|
||
<taxonomicName id="2CAD4D29FFEDFF85FBF864D0FB44FE3B" authorityName="Y.-Y.Li" authorityYear="1984" box="[1119,1278,412,437]" class="Cyanobacteriia" family="Chroococcaceae" genus="Nephrococcus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="7" pageNumber="142" phylum="Cyanobacteria" rank="genus">
|
||
<emphasis id="D9D9EAB8FFEDFF85FBF864D0FB44FE3B" box="[1119,1278,412,437]" italics="true" pageId="7" pageNumber="142">Nephrococcus</emphasis>
|
||
</taxonomicName>
|
||
had the highest LI and the lowest T recorded. The included supplementary variables, water content and content of organic/inorganic matter (expressed as mg/cm
|
||
<superScript id="1CD89BE2FFEDFF85FE6164AEFE74FE7E" attach="left" box="[454,462,482,496]" fontSize="6" pageId="7" pageNumber="142">2</superScript>
|
||
), also had the highest values at this sampling site. The content of Chl-a was also high. CCA showed that the sampling site that contained
|
||
<taxonomicName id="2CAD4D29FFEDFF85FD146744FCE8FDAF" authorityName="Y.-Y.Li" authorityYear="1984" box="[691,850,520,545]" class="Cyanobacteriia" family="Chroococcaceae" genus="Nephrococcus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="7" pageNumber="142" phylum="Cyanobacteria" rank="genus">
|
||
<emphasis id="D9D9EAB8FFEDFF85FD146744FCE8FDAF" box="[691,850,520,545]" italics="true" pageId="7" pageNumber="142">Nephrococcus</emphasis>
|
||
</taxonomicName>
|
||
was distinct from all the other sampling sites explored in Božana Cave, and many taxa that were not recorded at other sampling sites were documented at S8.
|
||
</paragraph>
|
||
<caption id="BFD26622FFEDFF85FF2F63D2FEC3F975" ID-DOI="http://doi.org/10.5281/zenodo.13644464" ID-Zenodo-Dep="13644464" httpUri="https://zenodo.org/record/13644464/files/figure.png" pageId="7" pageNumber="142" startId="7.[136,229,1694,1715]" targetBox="[173,1389,673,1635]" targetPageId="7" targetType="figure">
|
||
<paragraph id="EB1236AAFFEDFF85FF2F63D2FEC3F975" blockId="7.[136,1452,1694,1787]" pageId="7" pageNumber="142">
|
||
<emphasis id="D9D9EAB8FFEDFF85FF2F63D2FF44F93D" bold="true" box="[136,254,1694,1715]" pageId="7" pageNumber="142">FIGURE 6.</emphasis>
|
||
CCA of cyanobacterial and algal taxa found in Božana Cave, with T, RH and LI as explanatory variables and sampling sites (S1–S8), chlorophyll-a (expressed as μg/cm
|
||
<superScript id="1CD89BE2FFEDFF85FD91638DFD87F943" attach="left" box="[566,573,1729,1741]" fontSize="5" pageId="7" pageNumber="142">2</superScript>
|
||
), the water content and the content of organic/inorganic matter (expressed as mg/cm
|
||
<superScript id="1CD89BE2FFEDFF85FA27638DFA3DF943" attach="left" box="[1408,1415,1729,1741]" fontSize="5" pageId="7" pageNumber="142">2</superScript>
|
||
) as supplementary variables.
|
||
</paragraph>
|
||
</caption>
|
||
<paragraph id="EB1236AAFFEDFF85FF1A6203FBDDF8E6" blockId="7.[189,1127,1871,1896]" box="[189,1127,1871,1896]" pageId="7" pageNumber="142">
|
||
The main difference points between all
|
||
<taxonomicName id="2CAD4D29FFEDFF85FDDD6203FCCBF8E6" box="[634,881,1871,1896]" pageId="7" pageNumber="142">
|
||
<emphasis id="D9D9EAB8FFEDFF85FDDD6203FCA3F8E6" box="[634,793,1871,1896]" italics="true" pageId="7" pageNumber="142">Nephrococcus</emphasis>
|
||
species
|
||
</taxonomicName>
|
||
are shown in
|
||
<tableCitation id="A62F0311FFEDFF85FBAA6203FBD9F8E6" box="[1037,1123,1871,1896]" captionStart="TABLE 2" captionStartId="8.[136,216,160,181]" captionText="TABLE 2. A brief description of all Nephrococcus species. Legend: * Referred to one small colony ** Data obtained or measured from" pageId="7" pageNumber="142">Table 2</tableCitation>
|
||
.
|
||
</paragraph>
|
||
<caption id="BFD26622FFE2FF8AFF2F65ECFA16FF3B" box="[136,1452,160,181]" pageId="8" pageNumber="143" startId="8.[136,216,160,181]" targetType="table">
|
||
<paragraph id="EB1236AAFFE2FF8AFF2F65ECFA16FF3B" blockId="8.[136,1452,160,217]" box="[136,1452,160,181]" pageId="8" pageNumber="143">
|
||
<emphasis id="D9D9EAB8FFE2FF8AFF2F65ECFF50FF3B" bold="true" box="[136,234,160,181]" pageId="8" pageNumber="143">TABLE 2</emphasis>
|
||
. A brief description of all
|
||
<taxonomicName id="2CAD4D29FFE2FF8AFE4C65ECFD7CFF3B" box="[491,710,160,181]" class="Cyanobacteriia" family="Chroococcaceae" genus="Nephrococcus" kingdom="Bacteria" order="Cyanobacteriales" pageId="8" pageNumber="143" phylum="Cyanobacteria" rank="species" species="undetermined">
|
||
<emphasis id="D9D9EAB8FFE2FF8AFE4C65ECFDC9FF3B" box="[491,627,160,181]" italics="true" pageId="8" pageNumber="143">Nephrococcus</emphasis>
|
||
species.
|
||
</taxonomicName>
|
||
Legend: * Referred to one small colony ** Data obtained or measured from
|
||
</paragraph>
|
||
</caption>
|
||
<paragraph id="EB1236AAFFE2FF8AFF2F6588FD31FF57" blockId="8.[136,1452,160,217]" box="[136,651,196,217]" pageId="8" pageNumber="143">the illustrations *** In developed colonies —Missing</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |