155 lines
10 KiB
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155 lines
10 KiB
XML
<document ID-DOI="10.1099/ijsem.0.004945" ID-GBIF-Dataset="216b98f8-95b8-4abc-b748-191e0e84bd35" ID-ISSN="1466-5034" ID-PMC="PMC8513617" ID-PubMed="34379584" ID-Zenodo-Dep="6224170" checkinTime="1645466238162" checkinUser="felipe" docAuthor="Bird, Lina J., Kuenen, J. Gijs, Osburn, Magdalena R., Tomioka, Naotaka, Ishii, Shun’ichi, Barr, Casey, Nealson, Kenneth H. & Suzuki, Shino" docDate="2021" docId="03A8F76C93557427FC8FF93AFD69C41B" docLanguage="en" docName="IntJSystEvolMicrobiol.71.8.004945.pdf" docOrigin="International Journal of Systematic and Evolutionary Microbiology (004945) 71 (8)" docSource="http://dx.doi.org/10.1099/ijsem.0.004945" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.2:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="2" docTitle="Serpentinimonas barnesii Bird & Kuenen & Osburn & Tomioka & Ishii & Barr & Nealson & Suzuki 2021, SP. NOV." docType="treatment" docVersion="7" lastPageNumber="9" masterDocId="FF918F149352742FFFB3FFAEFFB6C655" masterDocTitle="Serpentinimonas gen. nov., Serpentinimonas raichei sp. nov., Serpentinimonas barnesii sp. nov. and Serpentinimonas maccroryi sp. nov., hyperalkaliphilic and facultative autotrophic bacteria isolated from terrestrial serpentinizing springs" masterLastPageNumber="10" masterPageNumber="1" pageNumber="8" updateTime="1668130833024" updateUser="ExternalLinkService">
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<mods:mods xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo>
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<mods:title>Serpentinimonas gen. nov., Serpentinimonas raichei sp. nov., Serpentinimonas barnesii sp. nov. and Serpentinimonas maccroryi sp. nov., hyperalkaliphilic and facultative autotrophic bacteria isolated from terrestrial serpentinizing springs</mods:title>
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</mods:titleInfo>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Bird, Lina J.</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Kuenen, J. Gijs</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Osburn, Magdalena R.</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Tomioka, Naotaka</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Ishii, Shun’ichi</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Barr, Casey</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Nealson, Kenneth H.</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Suzuki, Shino</mods:namePart>
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</mods:name>
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<mods:typeOfResource>text</mods:typeOfResource>
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<mods:relatedItem type="host">
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<mods:titleInfo>
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<mods:title>International Journal of Systematic and Evolutionary Microbiology</mods:title>
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</mods:titleInfo>
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<mods:part>
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<mods:date>2021</mods:date>
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<mods:detail type="series">
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<mods:title>004945</mods:title>
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</mods:detail>
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<mods:detail type="pubDate">
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<mods:number>2021-08-11</mods:number>
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</mods:detail>
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<mods:detail type="volume">
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<mods:number>71</mods:number>
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</mods:detail>
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<mods:detail type="issue">
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<mods:number>8</mods:number>
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</mods:detail>
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<mods:extent unit="page">
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<mods:start>1</mods:start>
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<mods:end>10</mods:end>
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</mods:extent>
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</mods:part>
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</mods:relatedItem>
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<mods:location>
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<mods:url>http://dx.doi.org/10.1099/ijsem.0.004945</mods:url>
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</mods:location>
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<mods:classification>journal article</mods:classification>
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<mods:identifier type="DOI">10.1099/ijsem.0.004945</mods:identifier>
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<mods:identifier type="GBIF-Dataset">216b98f8-95b8-4abc-b748-191e0e84bd35</mods:identifier>
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<mods:identifier type="ISSN">1466-5034</mods:identifier>
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<mods:identifier type="PMC">PMC8513617</mods:identifier>
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<mods:identifier type="PubMed">34379584</mods:identifier>
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<mods:identifier type="Zenodo-Dep">6224170</mods:identifier>
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</mods:mods>
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<treatment ID-DOI="http://doi.org/10.5281/zenodo.6314527" ID-GBIF-Taxon="193580169" ID-Zenodo-Dep="6314527" LSID="urn:lsid:plazi:treatment:03A8F76C93557427FC8FF93AFD69C41B" httpUri="http://treatment.plazi.org/id/03A8F76C93557427FC8FF93AFD69C41B" lastPageId="8" lastPageNumber="9" pageId="7" pageNumber="8">
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<subSubSection pageId="7" pageNumber="8" type="nomenclature">
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<paragraph blockId="7.[828,1469,1684,1956]" pageId="7" pageNumber="8">
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<heading allCaps="true" bold="true" fontSize="12" level="2" pageId="7" pageNumber="8" reason="3">
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<emphasis bold="true" pageId="7" pageNumber="8">
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DESCRIPTION OF
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<taxonomicName authority="Bird & Kuenen & Osburn & Tomioka & Ishii & Barr & Nealson & Suzuki, 2021" authorityName="Bird & Kuenen & Osburn & Tomioka & Ishii & Barr & Nealson & Suzuki" authorityYear="2021" class="Gammaproteobacteria" family="Burkholderiaceae" genus="Serpentinimonas" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Burkholderiales" pageId="7" pageNumber="8" phylum="Proteobacteria" rank="species" species="barnesii" status="sp. nov.">
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<emphasis bold="true" italics="true" pageId="7" pageNumber="8">SERPENTINIMONAS BARNESII</emphasis>
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</taxonomicName>
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<taxonomicNameLabel box="[969,1085,1722,1751]" pageId="7" pageNumber="8" rank="species">SP. NOV.</taxonomicNameLabel>
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</emphasis>
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection pageId="7" pageNumber="8" type="etymology">
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<paragraph blockId="7.[828,1469,1684,1956]" pageId="7" pageNumber="8">
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<taxonomicName authorityName="Bird & Kuenen & Osburn & Tomioka & Ishii & Barr & Nealson & Suzuki" authorityYear="2021" box="[828,1100,1764,1788]" class="Gammaproteobacteria" family="Burkholderiaceae" genus="Serpentinimonas" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Burkholderiales" pageId="7" pageNumber="8" phylum="Proteobacteria" rank="species" species="barnesii">
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<emphasis box="[828,1100,1764,1788]" italics="true" pageId="7" pageNumber="8">Serpentinimonas barnesii</emphasis>
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</taxonomicName>
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(bar.ne′ si.i. N.L. gen. n.
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<taxonomicName authorityName="Bird & Kuenen & Osburn & Tomioka & Ishii & Barr & Nealson & Suzuki" authorityYear="2021" box="[1374,1463,1764,1788]" class="Gammaproteobacteria" family="Burkholderiaceae" genus="Serpentinimonas" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Burkholderiales" pageId="7" pageNumber="8" phylum="Proteobacteria" rank="species" species="barnesii">barnesii</taxonomicName>
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, named after I. Barnes, geochemist and first describer of The Cedars serpentinization site).
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</paragraph>
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</subSubSection>
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<subSubSection lastPageId="8" lastPageNumber="9" pageId="7" pageNumber="8" type="description">
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<paragraph blockId="7.[828,1469,1684,1956]" lastBlockId="8.[120,761,183,590]" lastPageId="8" lastPageNumber="9" pageId="7" pageNumber="8">
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In addition to the characteristics given above in the genus description, the
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<typeStatus box="[1003,1049,1902,1926]" pageId="7" pageNumber="8">type</typeStatus>
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strain has the characteristics described below. Growth occurs at 18–37 °C and pH 9.0–12.0 with optimal growth at 30 °C and pH 11.0. NaCl ranges from
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<quantity metricMagnitude="-4" metricUnit="kg" metricValue="2.5" metricValueMax="5.0" metricValueMin="0.0" pageId="8" pageNumber="9" unit="g" value="0.25" valueMax="0.5" valueMin="0.0">0 to 0.5g</quantity>
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<superScript attach="left" box="[204,227,212,237]" fontSize="6" pageId="8" pageNumber="9">l−1</superScript>
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. The DNA G+C composition of the
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<typeStatus box="[621,667,214,238]" pageId="8" pageNumber="9">type</typeStatus>
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strain is 66.7mol% (determined from the genome). The strain grows autotrophically with hydrogen gas and calcium carbonate and heterotrophically on acetate, butyrate, lactate, pyruvate, ethanol and fumarate under microaerophilic conditions. The strain can ferment glucose. The strain is also able to utilize glucose as an electron donor, and nitrate as an electron acceptor. Major fatty acids are C
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<subScript attach="left" box="[458,485,444,458]" fontSize="6" pageId="8" pageNumber="9">16:0</subScript>
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and C
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<subScript attach="both" box="[554,580,444,458]" fontSize="6" pageId="8" pageNumber="9">18:1</subScript>
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ω7
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<emphasis box="[611,621,429,452]" italics="true" pageId="8" pageNumber="9">c</emphasis>
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. The respiratory quinone is ubiquinone.
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</paragraph>
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<paragraph blockId="8.[120,761,183,590]" pageId="8" pageNumber="9">
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<materialsCitation ID-GBIF-Occurrence="3472775301" collectionCode="H" country="United States of America" location="The Cedars" pageId="8" pageNumber="9" specimenCode="H1T" specimenCount="1" stateProvince="California" typeStatus="holotype">
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The
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<typeStatus box="[168,214,505,529]" pageId="8" pageNumber="9">type</typeStatus>
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strain,
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<specimenCode box="[295,338,503,529]" pageId="8" pageNumber="9">
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H1
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<superScript attach="left" box="[328,338,503,517]" fontSize="6" pageId="8" pageNumber="9">T</superScript>
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</specimenCode>
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(=NBRC 111849
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<superScript attach="none" box="[523,533,503,517]" fontSize="6" pageId="8" pageNumber="9">T</superScript>
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=DSM 103920
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<superScript attach="none" box="[688,698,503,517]" fontSize="6" pageId="8" pageNumber="9">T</superScript>
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), was isolated from a highly alkaline serpentinizing spring (Barnes Spring 5) in
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<location LSID="urn:lsid:plazi:treatment:03A8F76C93557427FC8FF93AFD69C41B:8EDE10A1935A7427FF4EFD98FEC0C41B" box="[253,374,566,590]" country="United States of America" name="The Cedars" pageId="8" pageNumber="9" stateProvince="California">The Cedars</location>
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located in north
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<collectingRegion box="[556,666,566,590]" country="United States of America" name="California" pageId="8" pageNumber="9">California</collectingRegion>
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,
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<collectingCountry box="[677,731,566,590]" name="United States of America" pageId="8" pageNumber="9">USA</collectingCountry>
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.
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</materialsCitation>
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |