211 lines
22 KiB
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211 lines
22 KiB
XML
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<mods:title id="0D7512A094AD16111D4C23E234F5FEC4">New Aquilariomyces and Mangifericomes species (Pleosporales, Ascomycota) from Aquilaria spp. in China</mods:title>
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<mods:namePart id="343DDF9FDDC60A99BD5B9811514C1C86">Du, Tian-Ye</mods:namePart>
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<mods:affiliation id="F91C4746D2989B9F6D13B1EAC5F37DD0">Research Center of Natural History and Culture, Center for Yunnan Plateau Biological Resources Protection and Utilization, Key Laboratory of Yunnan Provincial Department of Education of the Deep-Time Evolution on Biodiversity from the Origin of the Pearl River, College of Biology and Food Engineering, Qujing Normal University, Qujing 655011, China</mods:affiliation>
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<mods:namePart id="D8C768F97FC3186E6ECBB1D74F54A685">Nilthong, Somrudee</mods:namePart>
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<mods:namePart id="89712EFA51EC2A0E95B3D36DCCEDCFF4">Mapook, Ausana</mods:namePart>
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<mods:affiliation id="954F6C98F13CBE2D8C42726271173C46">Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100, Thailand</mods:affiliation>
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<mods:namePart id="3820B5A7FE84ECD64FB1ABFD6C29144D">Dai, Dong-Qin</mods:namePart>
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<mods:affiliation id="BE054D3DD010137C7DCC4EFC8C64293C">Research Center of Natural History and Culture, Center for Yunnan Plateau Biological Resources Protection and Utilization, Key Laboratory of Yunnan Provincial Department of Education of the Deep-Time Evolution on Biodiversity from the Origin of the Pearl River, College of Biology and Food Engineering, Qujing Normal University, Qujing 655011, China</mods:affiliation>
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<mods:namePart id="179D6E55B6C019CC5432CBE4F56F87FF">Rajeshkumar, Kunhiraman C.</mods:namePart>
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<mods:affiliation id="A74C7109A97BD6503883D734C75B9B87">School of Science, Mae Fah Luang University, Chiang Rai 57100, Thailand</mods:affiliation>
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<mods:namePart id="94AF074D0CE26C1D02C6B624278B30C4">Elgorban, Abdallah M.</mods:namePart>
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<mods:affiliation id="634CD41F343F0B0A13178A62AAABFE45">National Fungal Culture Collection of India (NFCCI), Biodiversity and Palaeobiology (Fungi) Gr, MACS Agharkar Research Institute, G. G. Agarkar Road, Pune 411004, India</mods:affiliation>
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<mods:namePart id="B347B2DBB1C5017B70F8CF15ED742E98">Han, Li-Su</mods:namePart>
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<mods:affiliation id="5707F88F93525D7D93E6A4AA8D6A4B24">Research Center of Natural History and Culture, Center for Yunnan Plateau Biological Resources Protection and Utilization, Key Laboratory of Yunnan Provincial Department of Education of the Deep-Time Evolution on Biodiversity from the Origin of the Pearl River, College of Biology and Food Engineering, Qujing Normal University, Qujing 655011, China</mods:affiliation>
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<mods:namePart id="7030A290D29B227A08CE45B04BE3090A">Wang, Hao-Han</mods:namePart>
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<mods:affiliation id="96FA9C67EEACFCFC9855F6B9783FF1CE">Research Center of Natural History and Culture, Center for Yunnan Plateau Biological Resources Protection and Utilization, Key Laboratory of Yunnan Provincial Department of Education of the Deep-Time Evolution on Biodiversity from the Origin of the Pearl River, College of Biology and Food Engineering, Qujing Normal University, Qujing 655011, China</mods:affiliation>
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<mods:namePart id="E509D5C100EE4586971C94FC74F3B718">Tibpromma, Saowaluck</mods:namePart>
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<mods:affiliation id="2104C994148DEF1636B322802A25734B">Research Center of Natural History and Culture, Center for Yunnan Plateau Biological Resources Protection and Utilization, Key Laboratory of Yunnan Provincial Department of Education of the Deep-Time Evolution on Biodiversity from the Origin of the Pearl River, College of Biology and Food Engineering, Qujing Normal University, Qujing 655011, China</mods:affiliation>
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<mods:date id="01EBA0308025A6F56DFB2B28C4BAB5F8">2025</mods:date>
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<mods:number id="0B7A7AD137CE0C3B865B9003140B11CB">2025-01-13</mods:number>
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<treatment id="FB92B032851251EEBC263F4A6C83A5B5" ID-DOI="http://doi.org/10.5281/zenodo.14639441" ID-GBIF-Taxon="252009933" ID-Zenodo-Dep="14639441" ID-arpha="FB92B032-8512-51EE-BC26-3F4A6C83A5B5" LSID="urn:lsid:plazi:treatment:FB92B032851251EEBC263F4A6C83A5B5" httpUri="http://treatment.plazi.org/id/FB92B032851251EEBC263F4A6C83A5B5" scope_order="Pleosporales" scope_phylum="Ascomycota">
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<subSubSection id="A397086FC8E881DCA296B9CDB54C7C09" type="nomenclature">
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<paragraph id="831075B6DD11B4CC01B5524CA3CC8D00">
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<taxonomicName id="B92CEDC25C22D47F973903953E0FA0B9" ID-CoL="B2NLH" ID-ENA="2925287" authority="E. F. Yang & Tibpromma, 2022" authorityName="E. F. Yang & Tibpromma" authorityYear="2022" class="Dothideomycetes" family="Thyridariaceae" genus="Mangifericomes" higherTaxonomySource="CoL,GBIF" kingdom="Fungi" order="Pleosporales" phylum="Ascomycota" rank="genus">
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<emphasis id="920CA4B09A05B1A6AACA97E5EEA06FED" italics="true">Mangifericomes</emphasis>
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E. F.
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<bibRefCitation id="B949350ECC47928915E382BD6CC73965" DOI="10.3390/jof8121249" author="Yang EF & Karunarathna SC & Dai DQ & Stephenson SL & Elgorban AM & Al-Rejaie S & Xiong XR & Promputtha I & Samarakoon MC & Tibpromma S" issue="12" journalOrPublisher="Journal of Fungi (Basel, Switzerland)" pagination="1249" refId="B69" refString="Yang EF, Karunarathna SC, Dai DQ, Stephenson SL, Elgorban AM, Al-Rejaie S, Xiong XR, Promputtha I, Samarakoon MC, Tibpromma S (2022) Taxonomy and phylogeny of fungi associated with Mangifera indica from Yunnan, China. Journal of Fungi (Basel, Switzerland) 8 (12): 1249. https: // doi. org / 10.3390 / jof 8121249" title="Taxonomy and phylogeny of fungi associated with Mangifera indica from Yunnan, China." volume="8" year="2022">Yang & Tibpromma, 2022</bibRefCitation>
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</taxonomicName>
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</paragraph>
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<subSubSection id="SECID0E2DBI" type="notes">
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<paragraph id="6AA85B37FDDD9B3594A699435C5B7D95">
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<heading id="FE083D62BF0B432FC051E7CBBAE4520D" reason="title">Notes.</heading>
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</paragraph>
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<paragraph id="29D088A986A533B367480CA8BA231C69">
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<taxonomicName id="47B2D0BC6F83499F20BA2326BCA66A51" authorityName="E. F. Yang & Tibpromma" authorityYear="2022" class="Dothideomycetes" genus="Mangifericomes" higherTaxonomySource="CoL,GBIF" kingdom="Fungi" order="Pleosporales" phylum="Ascomycota" rank="genus">
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<emphasis id="1E6C618DF3E47C77F4D32C469EAEA163" italics="true">Mangifericomes</emphasis>
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</taxonomicName>
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was established by
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<bibRefCitation id="A8B02CB944850C717D2451E67EBCE42A" DOI="10.3390/jof8121249" author="Yang EF & Karunarathna SC & Dai DQ & Stephenson SL & Elgorban AM & Al-Rejaie S & Xiong XR & Promputtha I & Samarakoon MC & Tibpromma S" etAl="et al." firstAuthor="Yang" issue="12" journalOrPublisher="Journal of Fungi (Basel, Switzerland)" pagination="1249" refId="B69" refString="Yang EF, Karunarathna SC, Dai DQ, Stephenson SL, Elgorban AM, Al-Rejaie S, Xiong XR, Promputtha I, Samarakoon MC, Tibpromma S (2022) Taxonomy and phylogeny of fungi associated with Mangifera indica from Yunnan, China. Journal of Fungi (Basel, Switzerland) 8 (12): 1249. https://doi.org/10.3390/jof8121249" title="Taxonomy and phylogeny of fungi associated with Mangifera indica from Yunnan, China." volume="8" year="2022">Yang et al. (2022)</bibRefCitation>
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as a monotypic genus in the
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<taxonomicName id="078981C2D6553B7219784CAD10572ED4" class="Dothideomycetes" kingdom="Fungi" order="Pleosporales" phylum="Ascomycota" rank="order">Pleosporales</taxonomicName>
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genera
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<emphasis id="7D4EB9E062636D31D3057EA9D6F21D32" italics="true">incertae sedis</emphasis>
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to accommodate
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<taxonomicName id="C3987272D4207E0E14E555A4568362BC" authority="E. F. Yang and Tibpromma" authorityName="E. F. Yang and Tibpromma" class="Dothideomycetes" genus="Mangifericomes" higherTaxonomySource="CoL,GBIF" kingdom="Fungi" order="Pleosporales" phylum="Ascomycota" rank="species" species="hongheensis">
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||
<emphasis id="A05750A76515BF16C023B187C295551F" italics="true">M. hongheensis</emphasis>
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E. F. Yang and Tibpromma
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</taxonomicName>
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as type species, which was isolated from
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<taxonomicName id="29AD5D5F79EB77DAAAB3D5C9D7A11AB4" class="Magnoliopsida" family="Anacardiaceae" genus="Mangifera" kingdom="Plantae" order="Sapindales" phylum="Tracheophyta" rank="species" species="indica">
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<emphasis id="FE2C72784445A63DDD9BC235BA8A04C2" italics="true">Mangifera indica</emphasis>
|
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</taxonomicName>
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||
L. in
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<collectingCountry id="E071944B61ED9AE3026FC4BC5CD3EC17" name="China">China</collectingCountry>
|
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.
|
||
<taxonomicName id="AB1BED0882C0E2F4BC658DB6A39E6C7E" authorityName="E. F. Yang & Tibpromma" authorityYear="2022" class="Dothideomycetes" genus="Mangifericomes" higherTaxonomySource="CoL,GBIF" kingdom="Fungi" order="Pleosporales" phylum="Ascomycota" rank="genus">
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<emphasis id="8C532E37C32E86037C344DFF5803EC34" italics="true">Mangifericomes</emphasis>
|
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</taxonomicName>
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is characterized by immersed or semi-immersed, globose to subglobose, dark brown to black ascomata with or without ostioles; a hamathecium comprising filiform, hyaline, septate, branched cellular pseudoparaphyses (
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<emphasis id="5B9F542C0E8D69F52E4C3CC888186F99" italics="true">sensu</emphasis>
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<bibRefCitation id="90FFD48E5ABB40E5D01BF80071FA9C35" DOI="10.1006/mpev.2000.0801" author="Liew" etAl="et al." firstAuthor="Liew" issue="3" journalOrPublisher="Molecular Phylogenetics and Evolution" pagination="392-402" refId="B32" refString="Liew ECY, Aptroot A, Hyde KD (2000) Phylogenetic significance of the pseudoparaphyses in Loculoascomycete taxonomy. Molecular Phylogenetics and Evolution 16 (3): 392–402. https://doi.org/10.1006/mpev.2000.0801" title="Phylogenetic significance of the pseudoparaphyses in Loculoascomycete taxonomy." volume="16" year="2000">Liew et al. 2000</bibRefCitation>
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); 8 - spored, bitunicate, cylindrical-clavate, pedicellate asci; and ellipsoid, muriform, pale brown to brown ascospores, wrapped in a gelatinous sheath (
|
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<bibRefCitation id="ED67F35D5038E0D77C4EC07CD19DBE08" DOI="10.3390/jof8121249" author="Yang" etAl="et al." firstAuthor="Yang" issue="12" journalOrPublisher="Journal of Fungi (Basel, Switzerland)" pagination="1249" refId="B69" refString="Yang EF, Karunarathna SC, Dai DQ, Stephenson SL, Elgorban AM, Al-Rejaie S, Xiong XR, Promputtha I, Samarakoon MC, Tibpromma S (2022) Taxonomy and phylogeny of fungi associated with Mangifera indica from Yunnan, China. Journal of Fungi (Basel, Switzerland) 8 (12): 1249. https://doi.org/10.3390/jof8121249" title="Taxonomy and phylogeny of fungi associated with Mangifera indica from Yunnan, China." volume="8" year="2022">Yang et al. 2022</bibRefCitation>
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). The updated phylogenetic tree of
|
||
<taxonomicName id="5B6E6F3FFD39DEA022CF9B36A395B469" authorityName="E. F. Yang & Tibpromma" authorityYear="2022" class="Dothideomycetes" genus="Mangifericomes" higherTaxonomySource="CoL,GBIF" kingdom="Fungi" order="Pleosporales" phylum="Ascomycota" rank="genus">
|
||
<emphasis id="FE413DB0AF8C1558944559FD5221657F" italics="true">Mangifericomes</emphasis>
|
||
</taxonomicName>
|
||
is shown in Fig.
|
||
<figureCitation id="FF7F9E022441F196D945E9F9A16D71BC" captionStart="Figure 5" captionStartId="F5" captionText="Figure 5. Phylogram generated from ML analysis of Pleosporales based on combined LSU, ITS, SSU, tef 1 - α, and rpb 2 sequence data of 159 taxa, which comprised 4584 base pairs of LSU = 1201, ITS = 534, SSU = 1018, rpb 2 = 930, tef 1 - α = 901. The best-scoring RAxML tree with a final likelihood value of - 91408.743991 is presented. The matrix had 3121 distinct alignment patterns, with 41.32 % of undetermined characters or gaps. Estimated base frequencies were as follows: A = 0.246701, C = 0.244302, G = 0.274425, T = 0.234571; substitution rates: AC = 1.391138, AG = 3.919388, AT = 1.582417, CG = 1.094328, CT = 7.887132, GT = 1.0; gamma distribution shape parameter α = 0.418663. Bootstrap support values for maximum likelihood (ML) equal to or greater than 70 % and clade credibility values greater than 0.90 from Bayesian inference analysis are labelled at each node. The tree is rooted with Orbilia auricolor (AFTOL-ID 906) and O. vinosa (AFTOL-ID 905). The new isolates are indicated in red, and the ex-type strains are in bold." figureDoi="10.3897/mycokeys.112.139831.figure5" httpUri="https://binary.pensoft.net/fig/1217444">5</figureCitation>
|
||
.
|
||
</paragraph>
|
||
<caption id="872B0CE00D5F6F20E13E4F143AE47461" ID-DOI="10.3897/mycokeys.112.139831.figure5" ID-arpha="121DF99A-968A-5B7A-9BBC-AFE3C5CF90EE" httpUri="https://binary.pensoft.net/fig/1217444" startId="F5">
|
||
<paragraph id="D6F7921AD61E713AFA14C0BF975D333A">
|
||
<label id="354D21D2792069C7615CE68B9B881C0B">Figure 5.</label>
|
||
</paragraph>
|
||
<paragraph id="5B36567B1F32AE2A917B0A69AE82B000">
|
||
Phylogram generated from ML analysis of
|
||
<taxonomicName id="59A5086EE0995E0AF185427BCFB69435" class="Dothideomycetes" kingdom="Fungi" order="Pleosporales" phylum="Ascomycota" rank="order">Pleosporales</taxonomicName>
|
||
based on combined
|
||
<abbrev id="ABBRID0ESGBI" xlink_title="28S large subunit">LSU</abbrev>
|
||
,
|
||
<abbrev id="ABBRID0EWGBI" xlink_title="internal transcribed spacer">ITS</abbrev>
|
||
,
|
||
<abbrev id="ABBRID0E1GBI" xlink_title="18S small subunit">SSU</abbrev>
|
||
,
|
||
<emphasis id="CD744ACD2643CAF394CB19B40134B33D" italics="true">tef</emphasis>
|
||
1 - α, and
|
||
<emphasis id="38CC67EE0F4A306C3FC91B9D9154E8F3" italics="true">rpb</emphasis>
|
||
2 sequence data of 159 taxa, which comprised 4584 base pairs of
|
||
<abbrev id="ABBRID0ECHBI" xlink_title="28S large subunit">LSU</abbrev>
|
||
= 1201,
|
||
<abbrev id="ABBRID0EGHBI" xlink_title="internal transcribed spacer">ITS</abbrev>
|
||
= 534,
|
||
<abbrev id="ABBRID0EKHBI" xlink_title="18S small subunit">SSU</abbrev>
|
||
= 1018,
|
||
<emphasis id="DBE2BF483F2D09140BF0C390E743C535" italics="true">rpb</emphasis>
|
||
2 = 930,
|
||
<emphasis id="C73B9E7525F10805A23AAF082852BB45" italics="true">tef</emphasis>
|
||
1 - α = 901. The best-scoring
|
||
<abbrev id="ABBRID0ESHBI" xlink_title="Randomized Accelerated Maximum Likelihood">RAxML</abbrev>
|
||
tree with a final likelihood value of - 91408.743991 is presented. The matrix had 3121 distinct alignment patterns, with 41.32 % of undetermined characters or gaps. Estimated base frequencies were as follows: A = 0.246701, C = 0.244302, G = 0.274425, T = 0.234571; substitution rates: AC = 1.391138, AG = 3.919388, AT = 1.582417, CG = 1.094328, CT = 7.887132, GT = 1.0; gamma distribution shape parameter
|
||
<emphasis id="37BEC78DCED86BE245C779B08C566EDF" italics="true">α</emphasis>
|
||
= 0.418663. Bootstrap support values for maximum likelihood (ML) equal to or greater than 70 % and clade credibility values greater than 0.90 from Bayesian inference analysis are labelled at each node. The tree is rooted with
|
||
<taxonomicName id="E14FFE4057C567C647AE6072169DD514" class="Leotiomycetes" family="Dermateaceae" genus="Orbilia" kingdom="Fungi" order="Helotiales" phylum="Ascomycota" rank="species" species="auricolor">
|
||
<emphasis id="D7D1E3EBE357E4CFD795818D6EEB0D57" italics="true">Orbilia auricolor</emphasis>
|
||
</taxonomicName>
|
||
(AFTOL-ID 906) and
|
||
<taxonomicName id="820445E996DB5EEFA6E547E3EAE113E0" class="Leotiomycetes" family="Dermateaceae" genus="Orbilia" kingdom="Fungi" order="Helotiales" phylum="Ascomycota" rank="species" species="vinosa">
|
||
<emphasis id="FB78B876CA83BC61E8BFF2902D215054" italics="true">O. vinosa</emphasis>
|
||
</taxonomicName>
|
||
(AFTOL-ID 905). The new isolates are indicated in red, and the ex-type strains are in bold.
|
||
</paragraph>
|
||
</caption>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |