164 lines
13 KiB
XML
164 lines
13 KiB
XML
<document id="5751B25E7B42FBB92BDCF93C72783247" ID-DOI="10.3897/mycokeys.107.125549" ID-publisher-id="125549" URI-arpha="3EA0E723-E6FC-58B0-8491-ED4CC2FBAB87" article-type="research-article" checkinTime="1723223129036" checkinUser="pensoft" docAuthor="Tedersoo, Leho, Magurno, Franco, Alkahtani, Saad & Mikryukov, Vladimir" docDate="2024" docId="118E75892DE250538FC7469A0F7D1B6C" docLanguage="en" docName="MycoKeys 107: 249-271" docOrigin="MycoKeys 107" docSource="https://mycokeys.pensoft.net/article/125549/download/xml/" docStyle="DocumentStyle:PensoftTaxPub.0000.journal_article.mycokeys" docStyleName="PensoftTaxPub.0000.journal_article.mycokeys" docTitle="Lokruma Tedersoo 2024, gen. nov." docType="treatment" docVersion="1" dtd-version="3.0" lastPageNumber="271" masterDocId="3EA0E723E6FC58B08491ED4CC2FBAB87" masterDocTitle="Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes)" masterLastPageNumber="271" masterPageNumber="249" pageNumber="249" updateTime="1723223268898" updateUser="pensoft">
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<mods:titleInfo id="2CBAFD4937D20C73F180C134C774F55B">
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<mods:title id="86B6D8826DF9AA2B7A3F3399D5CD754B">Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes)</mods:title>
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<mods:name id="E9137570EF6B236AAFC344BB501472F7" type="personal">
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<mods:role id="875355D565BA43FAF8A5BFCA595E13CE">
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<mods:roleTerm id="C983DF5C7355B14972FB44C259606BA0">Author</mods:roleTerm>
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<mods:namePart id="3A69BC4FB7C03359EAC10343749F86F9">Tedersoo, Leho</mods:namePart>
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<mods:affiliation id="BB0FC12CC29087204FDEC7C08BB105A8">Mycology and Microbiology Center, University of Tartu, 2 Liivi, 50409 Tartu, Estonia & Department of Zoology, College of Science, King Saud University, 12371 Riyadh, Saudi Arabia</mods:affiliation>
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</mods:name>
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<mods:name id="AF81C6F73D98CB698340B5DBE69B06B5" type="personal">
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<mods:roleTerm id="61D90FD8966B363441039A10A7753463">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="B91425C1AAD65E486EF6179EEA933CFF">Magurno, Franco</mods:namePart>
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<mods:nameIdentifier id="A3C31C92BB5B031E83557DA9E167C194" type="ORCID">0000-0002-3117-8149</mods:nameIdentifier>
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<mods:affiliation id="F125A6F3BEC69956420184109CF49EC3">Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice, Jagiellońska 28, 40 - 032 Katowice, Poland</mods:affiliation>
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</mods:name>
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<mods:name id="D64FE2A1AA587CC4DBBBEA5C737E7063" type="personal">
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<mods:roleTerm id="2A513C77AC646734AA4C8F7BD3061E74">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="0A795B04F9466426595123C08740EF03">Alkahtani, Saad</mods:namePart>
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<mods:nameIdentifier id="E7B6084DFC540790D1ADADA660A7CB92" type="ORCID">0000-0001-7381-5110</mods:nameIdentifier>
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<mods:affiliation id="084B49D9EF74E52C77CC7AC3E1A16025">Department of Zoology, College of Science, King Saud University, 12371 Riyadh, Saudi Arabia</mods:affiliation>
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</mods:role>
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<mods:namePart id="738943CBCC75CAB7E7147C1DFCE8D3F6">Mikryukov, Vladimir</mods:namePart>
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<mods:nameIdentifier id="214B5BE864EFFADC486379D386AF00F1" type="ORCID">0000-0003-2786-2690</mods:nameIdentifier>
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<mods:affiliation id="23BFD1884A34C29F1E44174A6114BCAA">Mycology and Microbiology Center, University of Tartu, 2 Liivi, 50409 Tartu, Estonia</mods:affiliation>
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<mods:typeOfResource id="48BFF7EFA5E028B8E6F17A18CD8B5B95">text</mods:typeOfResource>
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<mods:titleInfo id="1D8FC6CF275350B7646C6E030D0189BC">
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<mods:title id="2F608F41E8017B249F9D76561B988C1D">MycoKeys</mods:title>
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</mods:titleInfo>
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<mods:part id="34C175F28BB72A8A8417323BCAF88D59">
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<mods:date id="88CC22FC4B52E8F642590FD79C2EA805">2024</mods:date>
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<mods:detail id="630353D9A7187F4BCF9BD2F3D849D2E7" type="pubDate">
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<mods:number id="0612A4A194F99EC65E6EB681A60A92F2">2024-08-09</mods:number>
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</mods:detail>
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<mods:detail id="CAA7C114DD7F2045DB974BB4377EF92E" type="volume">
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<mods:number id="93F9A407BF9DDF2FFC5D5450403A2E80">107</mods:number>
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</mods:detail>
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<mods:start id="8DA3940241B6156A21A35243070551BF">249</mods:start>
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<mods:end id="D382F02C54ADFF277EDC6D29009F6E78">271</mods:end>
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</mods:part>
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</mods:relatedItem>
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<mods:classification id="853DA526F2E213DF8920549DC7C13C68">journal article</mods:classification>
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<mods:identifier id="47BF32CE18F57CC09D8DF82B6CAEC347" type="DOI">10.3897/mycokeys.107.125549</mods:identifier>
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</mods:mods>
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<treatment id="118E75892DE250538FC7469A0F7D1B6C" ID-arpha="118E7589-2DE2-5053-8FC7-469A0F7D1B6C" ID-mycobank="853596" LSID="urn:lsid:plazi:treatment:118E75892DE250538FC7469A0F7D1B6C" httpUri="http://treatment.plazi.org/id/118E75892DE250538FC7469A0F7D1B6C">
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<subSubSection id="2676836E9BCBFBE037622372A125D679" type="nomenclature">
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<paragraph id="8B98DD56A6B96C0B8A26D41776438090">
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<taxonomicName id="F9AC476993E3F71BC1AA54C77C1F2E8B" authority="Tedersoo" authorityName="Tedersoo" authorityYear="2024" class="Magnoliopsida" family="Lokrumaceae" genus="Lokruma" kingdom="Fungi" order="Lokrumales" phylum="Tracheophyta" rank="genus" status="gen. nov.">
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<emphasis id="D18C4B74B4A0301783A702FA2A7C2293" italics="true">Lokruma</emphasis>
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Tedersoo
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</taxonomicName>
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<taxonomicNameLabel id="DC85C037AC892374D8002B1A7DA86A9E" rank="genus">gen. nov.</taxonomicNameLabel>
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</paragraph>
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</subSubSection>
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<subSubSection id="SECID0E3SDI" type="type species">
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<paragraph id="950ACC73CDC35C24659887D61EB33EEB">
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<heading id="55808825F8FD4E76C9B489C32669093A" reason="title">
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<typeStatus id="66C4ABB5BFE3C01E3F1A8BD0B6DBE4D2">Type</typeStatus>
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species.
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</heading>
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</paragraph>
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<paragraph id="F83F484BCE5B96B3F5D88DD052538533">
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<taxonomicName id="8BE2EF98038806EBA2F1ED22B72E6B1D" authority="Tedersoo." authorityName="Tedersoo." class="Magnoliopsida" family="Dipterocarpaceae" genus="Lokruma" kingdom="Plantae" order="Malvales" phylum="Tracheophyta" rank="species" species="stenii">
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<emphasis id="2BDC9CC940BF435287E5EE0B040FB2C8" italics="true">Lokruma stenii</emphasis>
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Tedersoo.
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</taxonomicName>
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</paragraph>
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</subSubSection>
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<subSubSection id="SECID0ENTDI" type="description">
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<paragraph id="074025EC5DAFBE9744CC06E99AF16069">
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<heading id="47D9CC0252DA2572255D8718FD873FA2" reason="title">Description.</heading>
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</paragraph>
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<paragraph id="2CE2E175C9D6E159FA4C69FCC50082E6">
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Covers the monophyletic group in
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<tp_taxon-name id="2E8561D0708C5AA4D7EBC707F14CDC0E">
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<tp_taxon-name-part id="5FE5D73C6F8DE35C584970DF4A55E56D" taxon-name-part-type="family">Lokrumaceae</tp_taxon-name-part>
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</tp_taxon-name>
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(Fig.
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<figureCitation id="7D1895F424512FDC6C0AED282B10B633" captionStart="Figure 2" captionStartId="F2" captionText="Figure 2. Phylogenetic position of genera and genus-level groups of Endogonomycetes based on Maximum Likelihood analysis of SSU- 5.8 S-LSU sequences. The clades are collapsed, with the number of sequences included in parentheses. Question marks above branches indicate low ultra-rapid bootstrap support (< 95). Orders are highlighted in different colours. The uncollapsed phylogram is given in Suppl. material 3." figureDoi="10.3897/mycokeys.107.125549.figure2" httpUri="https://binary.pensoft.net/fig/1111389">2</figureCitation>
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). Phylogenetically delimited as the least inclusive clade covering sequence accessions EUK 1203766, EUK 1600125 and EUK 1600078 (Suppl. material
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<xref id="FC5A95D256B686963F75398B1C933430" ref-type="supplementary-material" rid="S3">3</xref>
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).
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</paragraph>
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</subSubSection>
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<subSubSection id="SECID0EAUDI" type="notes">
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<paragraph id="31901C373AD92F98B41838BFDD9F3746">
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<heading id="0CE9F68C44D478C17CA6C2A169AEA6A1" reason="title">Notes.</heading>
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</paragraph>
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<paragraph id="BE2094ABD529908827F2DD5B9C5CEDC8">
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Based on
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<abbrev id="ABBRID0EGUDI" xlink_title="internal transcribed spacer">
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<collectionCode id="E714DE238F99195EFFD484969B8E547E">ITS</collectionCode>
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</abbrev>
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sequences,
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<taxonomicName id="5FA1B2AA36818DB70BBA8CDCB509CE78" class="Magnoliopsida" family="Dipterocarpaceae" genus="Lokruma" kingdom="Plantae" order="Malvales" phylum="Tracheophyta" rank="genus">
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<emphasis id="4C130868B982349F700A6C8B886A95E8" italics="true">Lokruma</emphasis>
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</taxonomicName>
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is comprised of 35–40 species, some of which are represented by sequences EUK 1200048 (
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<abbrev id="ABBRID0ERUDI" xlink_title="Global Soil Mycobiome consortium">GSMc</abbrev>
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plot
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<collectionCode id="B5B5A3566BF578CE3CD1E0514510304C" country="Switzerland" lsid="urn:lsid:biocol.org:col:15706" name="Conservatoire et Jardin botaniques de la Ville de Genève" type="Herbarium">G</collectionCode>
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5130, grassland soil in Angera,
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<collectingCountry id="9DB288F8FDAF7065B1B6400F3C10BE60" name="Italy">Italy</collectingCountry>
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,
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<named-content content-type="dwc:verbatimCoordinates" id="NCID0EYUDI" specific-use="{"type":"Point","coordinates":[8.596570,45.773360]}">
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<geoCoordinate id="0D31C46B20D011E9B51B7484B9071BF9" degrees="45.77336" direction="north" orientation="latitude" precision="1" value="45.77336">45.77336 ° N</geoCoordinate>
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,
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<geoCoordinate id="0D1DABA4D0C3A43AAD480B8F13E5C415" degrees="8.59657" direction="east" orientation="longitude" precision="1" value="8.59657">8.59657 ° E</geoCoordinate>
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</named-content>
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); EUK 1602967 (
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<abbrev id="ABBRID0E4UDI" xlink_title="Global Soil Mycobiome consortium">GSMc</abbrev>
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plot
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<collectionCode id="2FED435602F57E34BF75D2E6AF89794C" country="Switzerland" lsid="urn:lsid:biocol.org:col:15706" name="Conservatoire et Jardin botaniques de la Ville de Genève" type="Herbarium">G</collectionCode>
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4626,
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<emphasis id="A8018D50873BB6AF26B9379F77822C11" italics="true">
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<taxonomicName id="FCBC817C806F658D167AC26F6A1A164B" class="Pinopsida" family="Pinaceae" genus="Picea" kingdom="Plantae" order="Pinales" phylum="Tracheophyta" rank="genus">Picea</taxonomicName>
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-
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<taxonomicName id="FFB0D939D4E1CDCA9719C8D4F4417662" class="Magnoliopsida" family="Salicaceae" genus="Populus" kingdom="Plantae" order="Malpighiales" phylum="Tracheophyta" rank="genus">Populus</taxonomicName>
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</emphasis>
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forest soil in Kõrve,
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<collectingCountry id="E9E229039879BAECBF9A75ED2A239B9F" name="Estonia">Estonia</collectingCountry>
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,
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<named-content content-type="dwc:verbatimCoordinates" id="NCID0ELVDI" specific-use="{"type":"Point","coordinates":[26.761440,59.077540]}">
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<geoCoordinate id="985AB3A26E051611DF06FB8781773318" degrees="59.07754" direction="north" orientation="latitude" precision="1" value="59.07754">59.07754 ° N</geoCoordinate>
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,
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<geoCoordinate id="870B053BE8A949D9A1CE6A2A284ADD30" degrees="26.76144" direction="east" orientation="longitude" precision="1" value="26.76144">26.76144 ° E</geoCoordinate>
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</named-content>
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); and EUK 1603058 (
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<taxonomicName id="D8A12B725929C4C7E30DBFF8F235B975" class="Pinopsida" family="Pinaceae" genus="Picea" kingdom="Plantae" order="Pinales" phylum="Tracheophyta" rank="species" species="abies">
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<emphasis id="D0E723A9C72F495A9D01E01A176D2552" italics="true">Picea abies</emphasis>
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</taxonomicName>
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forest soil in Serga,
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<collectingCountry id="A9D0814AE24C92EB3C817A3776554285" name="Estonia">Estonia</collectingCountry>
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,
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<named-content content-type="dwc:verbatimCoordinates" id="NCID0E5VDI" specific-use="{"type":"Point","coordinates":[27.475020,57.760520]}">
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<geoCoordinate id="E8E5C86DE247EA5319C3CC1403B982C4" degrees="57.76052" direction="north" orientation="latitude" precision="1" value="57.76052">57.76052 ° N</geoCoordinate>
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,
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<geoCoordinate id="97FDDFCA143D8F1F5E65CD451DAD5466" degrees="27.47502" direction="east" orientation="longitude" precision="1" value="27.47502">27.47502 ° E</geoCoordinate>
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</named-content>
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). Given the relatively high intraspecific differences and low interspecific differences, the
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<collectionCode id="5E45EE6A22C5AE7920B9B7EC80EAED23" country="USA" httpUri="http://biocol.org/urn:lsid:biocol.org:col:15590" lsid="urn:lsid:biocol.org:col:15590" name="Louisiana State University - Herbarium" type="Herbarium">LSU</collectionCode>
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region is not optimal for distinguishing species of
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<taxonomicName id="049A0D37FA5B63488C2E05F91BD1A555" class="Magnoliopsida" family="Dipterocarpaceae" genus="Lokruma" kingdom="Plantae" order="Malvales" phylum="Tracheophyta" rank="genus">
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<emphasis id="10A73D5984C145E69F8B47CB7093D2EF" italics="true">Lokruma</emphasis>
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</taxonomicName>
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.
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |