183 lines
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183 lines
18 KiB
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<mods:title id="7A1BED47F7DA5A26348764A23073BDD8">A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae</mods:title>
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<mods:namePart id="F45A8D435BE8D24FB92F5E81284B2D93">Zheng, Jinshui</mods:namePart>
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<mods:namePart id="7765AB3B46CCDA3F3ECEAE68040CF168">Wittouck, Stijn</mods:namePart>
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<mods:namePart id="5F9155CAF6ECC6B61F789797959388D4">Salvetti, Elisa</mods:namePart>
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<mods:namePart id="D120AF1CBFE0861A62AB3AC23E49D8C4">Harris, Hugh M. B.</mods:namePart>
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<mods:namePart id="A992E29698EDD651D787A918ACFD4FF8">Mattarelli, Paola</mods:namePart>
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<mods:namePart id="3CD6CE1BCB61214EE8E6D7AE9B73CA07">O’Toole, Paul W.</mods:namePart>
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<mods:namePart id="A4634DD1142BE286A5827268E02E9BD0">Pot, Bruno</mods:namePart>
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<mods:namePart id="C0FDF50FD1A61E52F79B63A10BB5B389">Walter, Jens</mods:namePart>
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<mods:namePart id="0C9ABA12746BE59E2F8EA694C6B5C30E">Watanabe, Koichi</mods:namePart>
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<mods:namePart id="D3380A412F630235567B26D74D51395A">Wuyts, Sander</mods:namePart>
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<mods:namePart id="FEADDAFC64D01645FC9C0DC60418FECF">Felis, Giovanna E.</mods:namePart>
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<mods:namePart id="165789CEFD44AFAC7965B9B8F0ED203E">Gänzle, Michael G.</mods:namePart>
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<mods:namePart id="396DE9F3F3FDE6520075E1A87304C05D">Lebeer, Sarah</mods:namePart>
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<mods:title id="06413AD4183F8B75737931CE7FDFAA34">International Journal of Systematic and Evolutionary Microbiology</mods:title>
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<mods:date id="9181F4FA810DC8F1B5F26BFFDAF9C2AB">2020</mods:date>
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<mods:number id="EE90878A83AF69FC711DE148E5420493">2020-04-15</mods:number>
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<mods:number id="638301414A3657ED49ECE6475E039799">70</mods:number>
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<mods:identifier id="EE505766C39ED81A3C5641EED8E38CAD" type="DOI">10.1099/ijsem.0.004107</mods:identifier>
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<treatment id="03A8D903D22D0263FC95FD2852833672" ID-DOI="http://doi.org/10.5281/zenodo.4728552" ID-GBIF-Taxon="181761634" ID-Zenodo-Dep="4728552" LSID="urn:lsid:plazi:treatment:03A8D903D22D0263FC95FD2852833672" httpUri="http://treatment.plazi.org/id/03A8D903D22D0263FC95FD2852833672" lastPageNumber="2816" pageId="34" pageNumber="2816">
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<subSubSection id="C31B3B9ED22D0263FC95FD28527F3000" pageId="34" pageNumber="2816" type="nomenclature">
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<paragraph id="8BBE6815D22D0263FC95FD28527F3000" blockId="34.[828,1467,732,931]" pageId="34" pageNumber="2816">
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<heading id="D0F6DF79D22D0263FC95FD28527F3000" allCaps="true" bold="true" fontSize="12" level="3" pageId="34" pageNumber="2816" reason="0">
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<emphasis id="B975B407D22D0263FC95FD28527F3000" bold="true" pageId="34" pageNumber="2816">
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DESCRIPTIONOF
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<taxonomicName id="4C011396D22D0263FB9CFD28546931E7" authority="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer, 2020" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" box="[1077,1387,732,761]" class="Bacilli" family="Lactobacillaceae" genus="Loigolactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="34" pageNumber="2816" phylum="Firmicutes" rank="genus" status="gen. nov.">
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<emphasis id="B975B407D22D0263FB9CFD28546931E7" bold="true" box="[1077,1387,732,761]" italics="true" pageId="34" pageNumber="2816">LOIGOLACTOBACILLUS</emphasis>
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</taxonomicName>
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<taxonomicNameLabel id="A246097CD22D0263FADDFD28527F3000" pageId="34" pageNumber="2816" rank="genus">GEN. NOV.</taxonomicNameLabel>
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</emphasis>
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection id="C31B3B9ED22D0263FC95FCD8527237E3" pageId="34" pageNumber="2816" type="discussion">
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<paragraph id="8BBE6815D22D0263FC95FCD852A930BD" blockId="34.[828,1467,732,931]" pageId="34" pageNumber="2816">
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<taxonomicName id="4C011396D22D0263FC95FCD852F4305A" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" box="[828,1014,812,836]" class="Bacilli" family="Lactobacillaceae" genus="Loigolactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="34" pageNumber="2816" phylum="Firmicutes" rank="genus">
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<emphasis id="B975B407D22D0263FC95FCD852F4305A" box="[828,1014,812,836]" italics="true" pageId="34" pageNumber="2816">Loigolactobacillus</emphasis>
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</taxonomicName>
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(Loi.go.lac.to.ba.cil’lus. Gr. masc. n.
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<emphasis id="B975B407D22D0263FA29FCD854B8305A" box="[1408,1466,812,836]" italics="true" pageId="34" pageNumber="2816">loigos</emphasis>
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destruction, ruin, havoc; N.L. masc. n
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<taxonomicName id="4C011396D22D0263FB7EFCBF5462307D" authorityName="Beijerinck" authorityYear="1901" box="[1239,1376,843,867]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="34" pageNumber="2816" phylum="Firmicutes" rank="genus">
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<emphasis id="B975B407D22D0263FB7EFCBF5462307D" box="[1239,1376,843,867]" italics="true" pageId="34" pageNumber="2816">Lactobacillus</emphasis>
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</taxonomicName>
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a bacterial genus;
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<emphasis id="B975B407D22D0263FC1EFC9F5579309D" box="[951,1147,875,899]" italics="true" pageId="34" pageNumber="2816">
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<taxonomicName id="4C011396D22D0263FC1EFC9F5575309D" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" box="[951,1143,875,899]" class="Bacilli" family="Lactobacillaceae" genus="Loigolactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="34" pageNumber="2816" phylum="Firmicutes" rank="genus">Loigolactobacillus</taxonomicName>
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,
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</emphasis>
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a lactobacillus with spoilage potential).
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</paragraph>
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<paragraph id="8BBE6815D22D0263FC95FC4E5273378E" blockId="34.[828,1473,954,1168]" pageId="34" pageNumber="2816">Cells are are non-motile, non-spore-forming, Grampositive, catalase negative rods, found singly and in pairs. They are homofermentative and produce both D-(−)- and L-(+)-lactic acid isomers. Pentose fermentation is species specific; most of species produce acid from D-mannose and D-mannitol. Themol% G+C contentisbetween 40.6 and 44.3.</paragraph>
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<paragraph id="8BBE6815D22D0263FC95FB52527237E3" blockId="34.[828,1467,1190,1277]" pageId="34" pageNumber="2816">
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Aphylogenetic tree on the basis of 16S rRNA genes of all species in the genus
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<taxonomicName id="4C011396D22D0263FBB2FB3255D737C0" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" box="[1051,1237,1222,1246]" class="Bacilli" family="Lactobacillaceae" genus="Loigolactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="34" pageNumber="2816" phylum="Firmicutes" rank="genus">
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<emphasis id="B975B407D22D0263FBB2FB3255D737C0" box="[1051,1237,1222,1246]" italics="true" pageId="34" pageNumber="2816">Loigolactobacillus</emphasis>
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</taxonomicName>
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is provided in
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<figureCitation id="133A7490D22D0263FADFFB32526E37E3" captionStart="Fig" captionStartId="7.[185,216,1617,1636]" captionTargetBox="[264,1323,181,1565]" captionTargetId="figure-17@7.[264,1323,181,1565]" captionTargetPageId="7" captionText="Fig. 6. Gene family presence/absence patterns in Lactobacillaceae and Leuconostocaceae. Each column represents a gene family presence/absence pattern in species of Lactobacillaceae and Leuconostoaceae, where presence is indicated with a dot. The absolute number of gene families that conform to each pattern is visualized in the marginal bar plot at the top. Separations between phylogroups are indicated with horizontal black lines. We defined genes that were present in all genomes of a clade and in none of the genomes outside of that clade as ‘signature genes’ (dark blue); other genes are shown in light blue. Only presence/absence patterns followed by four or more gene families are shown. Patterns of presence in a single species or all species are not shown. Unassigned species are clusters of closely related genomes which could not be assigned to a known species due to low whole-genome similarity to a type strain and/or low 16S rRNA similarity to a type strain." figureDoi="http://doi.org/10.5281/zenodo.4730552" httpUri="https://zenodo.org/record/4730552/files/figure.png" pageId="34" pageNumber="2816">Figure S6H</figureCitation>
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.
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</paragraph>
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</subSubSection>
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<subSubSection id="C31B3B9ED22D0263FC95FAE052833672" pageId="34" pageNumber="2816" type="type_taxon">
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<paragraph id="8BBE6815D22D0263FC95FAE052833672" blockId="34.[828,1466,1300,1388]" pageId="34" pageNumber="2816">
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The type species of the genus is
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<taxonomicName id="4C011396D22D0263FB31FAE1543A3632" ID-CoL="3RSQP" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" box="[1176,1336,1300,1324]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="34" pageNumber="2816" phylum="Firmicutes" rank="species" species="coryniformis" status="comb. nov.">
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<emphasis id="B975B407D22D0263FB31FAE1543A3632" box="[1176,1336,1300,1324]" italics="true" pageId="34" pageNumber="2816">L. coryniformis</emphasis>
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</taxonomicName>
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<taxonomicNameLabel id="A246097CD22D0263FAE9FAE054B53632" box="[1344,1463,1300,1324]" pageId="34" pageNumber="2816" rank="species">comb. nov.</taxonomicNameLabel>
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;
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<taxonomicName id="4C011396D22D0263FC94FAC052F63652" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" box="[829,1012,1332,1356]" class="Bacilli" family="Lactobacillaceae" genus="Loigolactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="34" pageNumber="2816" phylum="Firmicutes" rank="genus">
|
||
<emphasis id="B975B407D22D0263FC94FAC052F63652" box="[829,1012,1332,1356]" italics="true" pageId="34" pageNumber="2816">Loigolactobacillus</emphasis>
|
||
</taxonomicName>
|
||
was previously referred toas
|
||
<taxonomicName id="4C011396D22D0263FA89FAC154B83652" ID-CoL="3RSQP" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" box="[1312,1466,1332,1356]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="34" pageNumber="2816" phylum="Firmicutes" rank="species" species="coryniformis">
|
||
<emphasis id="B975B407D22D0263FA89FAC154B83652" box="[1312,1466,1332,1356]" italics="true" pageId="34" pageNumber="2816">L. coryniformis</emphasis>
|
||
</taxonomicName>
|
||
group.
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |