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<document id="7C1633206991A0DD1B2692ABDD05D69A" ID-CLB-Dataset="34038" ID-DOI="http://dx.doi.org/10.3897/mycokeys.7.4508" ID-GBIF-Dataset="471f4b4d-525a-4b91-8c41-28b8c7ca2944" ID-Pensoft-Pub="1314-4049-7-1" ModsDocAuthor="" ModsDocDate="2013" ModsDocID="1314-4049-7-1" ModsDocOrigin="MycoKeys 7" ModsDocTitle="DNA barcode identification of lichen-forming fungal species in the Rhizoplaca melanophthalma species-complex (Lecanorales, Lecanoraceae), including five new species" checkinTime="1451252987099" checkinUser="pensoft" docAuthor="Leavitt, Steven D., Fernandez-Mendoza, Fernando, Perez-Ortega, Sergio, Sohrabi, Mohammad, Divakar, Pradeep K., Lumbsch, H. Thorsten &amp; Clair, Larry L. St." docDate="2013" docId="97874201CE40B9B7144CB99C977BA5D3" docLanguage="en" docName="MycoKeys 7: 1-22" docOrigin="MycoKeys 7" docSource="http://dx.doi.org/10.3897/mycokeys.7.4508" docTitle="Rhizoplaca melanophthalma Leuckert &amp; Poelt Nova Hedwigia 28: 72 1977" docType="treatment" docVersion="4" lastPageNumber="8" masterDocId="FF9AFFE4FFB5985F4C434926FF83FFB8" masterDocTitle="DNA barcode identification of lichen-forming fungal species in the Rhizoplaca melanophthalma species-complex (Lecanorales, Lecanoraceae), including five new species" masterLastPageNumber="22" masterPageNumber="1" pageNumber="7" updateTime="1732781440215" updateUser="ExternalLinkService">
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<mods:title id="9D7E92F60D6113D31F572E5F4B9B7D15">DNA barcode identification of lichen-forming fungal species in the Rhizoplaca melanophthalma species-complex (Lecanorales, Lecanoraceae), including five new species</mods:title>
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<mods:namePart id="868FFF6B35E51D05EFB85FA4BE2B07CC">Leavitt, Steven D.</mods:namePart>
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<mods:namePart id="EC5BD985289BD37EA01A62A7D1F483A6">Fernandez-Mendoza, Fernando</mods:namePart>
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<mods:namePart id="DD45161DB6DC969090329CA9A9A875C7">Perez-Ortega, Sergio</mods:namePart>
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<mods:namePart id="58C167EBC924DB879929BB47311E165A">Sohrabi, Mohammad</mods:namePart>
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<mods:namePart id="39C77E0EFBDB3843ED2B11A184292ACA">Divakar, Pradeep K.</mods:namePart>
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<mods:namePart id="42454F99C510C2D327FBD2836E858501">Lumbsch, H. Thorsten</mods:namePart>
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<mods:namePart id="C793F41EA33E460E1084A79584B2A79A">Clair, Larry L. St.</mods:namePart>
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<mods:typeOfResource id="C67F9F72AD0C9B3F2F868CC6E5E8A9D7">text</mods:typeOfResource>
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<mods:title id="7FE08932D50FCB2B8B6D257E55D80F23">MycoKeys</mods:title>
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<mods:date id="97226394D2E61A791B6AE57C790A8452">2013</mods:date>
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<mods:number id="F0AAA4FF1A1CF8603EA89D1536ABA050">7</mods:number>
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<treatment id="97874201CE40B9B7144CB99C977BA5D3" ID-GBIF-Taxon="152023592" LSID="urn:lsid:plazi:treatment:97874201CE40B9B7144CB99C977BA5D3" httpUri="http://treatment.plazi.org/id/97874201CE40B9B7144CB99C977BA5D3" lastPageId="7" lastPageNumber="8" pageId="6" pageNumber="7" scope_family="Lecanoraceae" scope_order="Lecanorales">
<subSubSection id="B18ED0C059B852CA64E7B6BCC8D79C47" pageId="6" pageNumber="7" type="nomenclature">
<paragraph id="0A82DCAFF1F46FCDE71637A6CC5E76DB" pageId="6" pageNumber="7">
<taxonomicName id="6367CE0ED2C22FB937A9A0AD0BF58328" ID-CoL="4SD47" LSID="MycoBank no. MB 343580" authority="DC.) Leuckert &amp; Poelt Nova Hedwigia 28: 72 (1977" authorityYear="1977" class="Lecanoromycetes" family="Lecanoraceae" genus="Rhizoplaca" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Rhizoplaca melanophthalma" order="Lecanorales" pageId="6" pageNumber="7" phylum="Ascomycota" rank="species" species="melanophthalma">Rhizoplaca melanophthalma (DC.) Leuckert &amp; Poelt Nova Hedwigia 28: 72 (1977)</taxonomicName>
</paragraph>
</subSubSection>
<subSubSection id="C62766833A0E2A504C6B0E49A58D7AC5" pageId="6" pageNumber="7" type="basionym">
<paragraph id="C17803A0E3093D44EABCF24FF6A41550" pageId="6" pageNumber="7">Basionym.</paragraph>
<paragraph id="3D1016FE5EC1599704ADEA40FE73AB89" pageId="6" pageNumber="7">
<taxonomicName id="F5B0B4CECE60F33CD0AA7F7A0C009FB5" class="Lecanoromycetes" family="Lecanoraceae" genus="Lichen" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Lichen melanophthalma" order="Lecanorales" pageId="6" pageNumber="7" phylum="Ascomycota" rank="species" species="melanophthalma">Lichen melanophthalma</taxonomicName>
Ramond in Lamarck &amp; de Candolle, Fl. Franc. Ed. 3.2:377 (1805).
</paragraph>
</subSubSection>
<subSubSection id="09DCE688D6AE34EFCD05D56908E7423F" pageId="6" pageNumber="7" type="epitype">
<paragraph id="4AFA151AA3ADD4E6F967E49450F35BF6" pageId="6" pageNumber="7">Epitype.</paragraph>
<paragraph id="506288185974BBDA9CC3D93FE9720121" pageId="6" pageNumber="7">
Spain, Teruel, Noguera de
<normalizedToken id="95AB6CDB55293D5D72EE25C9FB16442F" originalValue="Albarracín">Albarracin</normalizedToken>
, carretera A-1521 hacia Orihuela del Tremedal, antes de la
<normalizedToken id="909229219C802F253A4670FD88813E03" originalValue="Peña">Pena</normalizedToken>
del Castillo, pista a &quot;Ruta Laguna&quot;,
<normalizedToken id="FC4B1C060211E09B81CC37231A773109" originalValue="“Peña">&quot;Pena</normalizedToken>
Aguada&quot;, 30TXK16815, 1590 m alt., on quartzite in a
<taxonomicName id="B1636713A734BB639CB0A2A86D388A5E" class="Magnoliopsida" family="Fagaceae" genus="Quercus" higherTaxonomySource="CoL" kingdom="Plantae" lsidName="Quercus pyrenaica" order="Fagales" pageId="6" pageNumber="7" phylum="Tracheophyta" rank="species" species="pyrenaica">Quercus pyrenaica</taxonomicName>
and
<taxonomicName id="0B3EE9F2717CD0A1AB3FFFCD4255D060" class="Pinopsida" family="Pinaceae" genus="Pinus" higherTaxonomySource="CoL" kingdom="Plantae" lsidName="Pinus sylvestris" order="Pinales" pageId="6" pageNumber="7" phylum="Tracheophyta" rank="species" species="sylvestris">Pinus sylvestris</taxonomicName>
forest, 04 October 2010, M. Vivas &amp; J. Rico, Vivas 94, MAF -Lich 16805 (Epitype: MAF-Lich). We were unable to obtain fresh material from the Pic du Midi de Bigorre in the French Pyrenees (location of original type collection of
<taxonomicName id="B811A571C8A8B047D04196D2EE860778" class="Lecanoromycetes" family="Lecanoraceae" genus="Rhizoplaca" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Rhizoplaca melanophthalma" order="Lecanorales" pageId="6" pageNumber="7" phylum="Ascomycota" rank="species" species="melanophthalma">Rhizoplaca melanophthalma</taxonomicName>
). In order to fix the application of the name, we selected a specimen from Teruel, Spain (MAF-Lich 16805) as the epitype. The epitype shares an identical ITS haplotype with specimens collected in Chile, China, Spain, Switzerland, and the USA, and thus appropriately represents the cosmopolitan distribution of
<taxonomicName id="5BBA20A2A08698EC1301E3EE9F4FD7F9" class="Lecanoromycetes" family="Lecanoraceae" genus="Rhizoplaca" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Rhizoplaca melanophthalma" order="Lecanorales" pageId="6" pageNumber="7" phylum="Ascomycota" rank="species" species="melanophthalma">Rhizoplaca melanophthalma</taxonomicName>
s.s. The ITS sequence of the epitype is deposited in GenBank under accession no. JX948232.
</paragraph>
</subSubSection>
<subSubSection id="ABAB2090FE34A8B649770CF83AD7906B" lastPageId="7" lastPageNumber="8" pageId="6" pageNumber="7" type="description">
<paragraph id="16B656F2912D335C51EAE6818E688E94" pageId="6" pageNumber="7">Description.</paragraph>
<paragraph id="31C760EBEC8AD5783C03B7846FB43C54" pageId="6" pageNumber="7">
A morphological description can be found in
<bibRefCitation id="0E9642EAD5794229265F88AAE5BD3D59" author="Leuckert, C" journalOrPublisher="Nova Hedwigia" pageId="17" pageNumber="18" pagination="71 - 129" title="Zur Chemotaxonomie der eurasischen Arten der Flechtengattung rhizoplaca." volume="28" year="1977">Leuckert et al. (1977)</bibRefCitation>
and
<bibRefCitation id="E14FCE935BE80816D58B0C21AE7FAAA0" pageId="6" pageNumber="7">Ryan (2001)</bibRefCitation>
.
<taxonomicName id="9A289FC5B263CAB749766B07B64778D0" class="Lecanoromycetes" family="Lecanoraceae" genus="Rhizoplaca" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Rhizoplaca melanophthalma" order="Lecanorales" pageId="6" pageNumber="7" phylum="Ascomycota" rank="species" species="melanophthalma">Rhizoplaca melanophthalma</taxonomicName>
consists of specimens recovered within 'clade
<normalizedToken id="87F3BE605BFE023FDBD7D6E0B11D8552" originalValue="II’">II'</normalizedToken>
in
<bibRefCitation id="57F09DACFA25ACF7D65A856D55BC6665" author="Leavitt, SD" journalOrPublisher="Molecular Phylogenetics and Evolution" pageId="16" pageNumber="17" pagination="587 - 602" title="Complex patterns of speciation in cosmopolitan '' rock posy' ' lichens - Discovering and delimiting cryptic fungal species in the lichen-forming Rhizoplaca melanophthalma species-complex (Lecanoraceae, Ascomycota)." url="10.1016/j.ympev.2011.03.020" volume="59" year="2011 a">Leavitt et al. (2011a)</bibRefCitation>
, which is supported as a lineage distinct from all other populations according to coalescent-based genetic analysis of multiple genetic loci. The mean genetic distances among ITS haplotypes was estimated to be 0.009
<normalizedToken id="765D5EF287645DFBC7A126DE4FB8DB16" originalValue="±">+/-</normalizedToken>
0.006.
</paragraph>
<paragraph id="D8912CED7860EA31861971EA6BA60EB4" pageId="7" pageNumber="8">
<pageBreakToken id="4C817FE5E9B8DA74C70949BEA75CFEBC" pageId="7" pageNumber="8" start="start">Chemistry</pageBreakToken>
- Usnic acid (major); usually with psoromic (major), constipatic (minor), dehydroconstipatic (minor), dehydroprotocetraric (minor), and 2'-O-demethylsubpsoromic (minor or trace) acids; occasionally with subpsoromic (minor) and 2'-O-demethylpsoromic (minor) acids.
</paragraph>
</subSubSection>
<subSubSection id="3233B1F6E8EFDF27AD388E9698EEE8D2" pageId="7" pageNumber="8" type="reference phylogeny">
<paragraph id="1E6E9AF39DC7F4F84B26B6D35C04541C" pageId="7" pageNumber="8">Reference phylogeny.</paragraph>
<paragraph id="969E8796291CE823E6EDAD76F26C64E3" pageId="7" pageNumber="8">
Supplementary file 2 (terminal label:
<normalizedToken id="84F7E23E20E88F26D41F20AAAE3DA30C" originalValue="‘6604’">'6604'</normalizedToken>
) &amp;
<bibRefCitation id="621F440C832B681310E35292A35D9AB5" author="Leavitt, SD" journalOrPublisher="Molecular Phylogenetics and Evolution" pageId="16" pageNumber="17" pagination="587 - 602" title="Complex patterns of speciation in cosmopolitan '' rock posy' ' lichens - Discovering and delimiting cryptic fungal species in the lichen-forming Rhizoplaca melanophthalma species-complex (Lecanoraceae, Ascomycota)." url="10.1016/j.ympev.2011.03.020" volume="59" year="2011 a">Leavitt et al. 2011a</bibRefCitation>
(fig. 5, 'clade
<normalizedToken id="1BBFE78F5A737847AA382C7A96B0A9AD" originalValue="II’">II'</normalizedToken>
).
</paragraph>
</subSubSection>
<subSubSection id="F772259EC1117747E0A9495AF473A162" pageId="7" pageNumber="8" type="reference sequence">
<paragraph id="EA6A005FF67FF49CDDBAA0C1115991C6" pageId="7" pageNumber="8">Reference sequence.</paragraph>
<paragraph id="804E35F9289D3AE2585E23AEB7273F6A" pageId="7" pageNumber="8">GenBank no. JX948232.</paragraph>
<paragraph id="CEF24A8E072713C5381D5DC1F87D6FFB" pageId="7" pageNumber="8">Phylogenetic notes: Strongly supported as monophyletic lineage in both concatenated multilocus gene tree (ML bootstrap = 95%: posterior probability = 1.0) and the ITS gene topology (ML bootstrap = 91%, this study); and strong speciation probability inferred from multiple loci (BPP speciation probability = 1.0).</paragraph>
</subSubSection>
<subSubSection id="0BBAACA260BB7B0F84A5A1B56F441990" pageId="7" pageNumber="8" type="ecology and distribution">
<paragraph id="EF9B9D29875BEF392E1D9E48B12E04C7" pageId="7" pageNumber="8">Ecology and distribution.</paragraph>
<paragraph id="550D649D1A224C4FD9F04EC51BE86FB8" pageId="7" pageNumber="8">In its narrower circumscription, this taxon isknown from Antarctica, Asia (including Central Asia and China), Europe, North and South America. The species has also been recorded from alpine areas in the tropics. However, additional studies are required to verify the identity of these populations. It typically occurs on exposed calcium-poor rock (e.g. basalt, granite, schist), but sometimes on calcium rich sandstone and limestone. It ranges in distribution from arid lowland woodlands into upper montane coniferous forests and the lower portions of the alpine tundra.</paragraph>
</subSubSection>
<subSubSection id="74EE422AE9316E30B91154194DFA8EB9" pageId="7" pageNumber="8" type="specimens examined">
<paragraph id="675CC1F5E8CB171CACAB037EE16307F5" pageId="7" pageNumber="8">Specimens examined</paragraph>
<paragraph id="CD84676B68A8D7933E47B7BF3CE1C6DD" pageId="7" pageNumber="8">. See supplementary file 1.</paragraph>
</subSubSection>
</treatment>
</document>
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