246 lines
22 KiB
XML
246 lines
22 KiB
XML
<document id="29C96949A1685D275129EFF38E879FD7" ID-CLB-Dataset="20655" ID-DOI="10.1099/ijsem.0.004644" ID-GBIF-Dataset="6b321035-fd9c-4b25-a3b6-79a05a309793" ID-ISSN="1466-5034" ID-PMC="PMC8346765" ID-PubMed="33533708" ID-Zenodo-Dep="6048739" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="existingObjects,plazi" IM.taxonomicNames_approvedBy="felipe" checkinTime="1644597549702" checkinUser="felipe" docAuthor="Li, Fuyong, Cheng, Christopher C., Zheng, Jinshui, Liu, Junhong, Quevedo, Rodrigo Margain, Li, Junjie, Roos, Stefan, Gänzle, Michael G. & Walter, Jens" docDate="2021" docId="CD6F3526FFCB2528477EFEE0FF7B208D" docLanguage="en" docName="IntJSystEvolMicrobiol.71.2.004644.pdf" docOrigin="International Journal of Systematic and Evolutionary Microbiology (004644) 71 (2)" docSource="http://dx.doi.org/10.1099/ijsem.0.004644" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.3:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="3" docTitle="Limosilactobacillus rudii Li & Cheng & Zheng & Liu & Quevedo & Li & Roos & Gänzle & Walter 2021, SP. NOV." docType="treatment" docVersion="9" lastPageNumber="17" masterDocId="31564D5EFFDB25384707FFD3FFC62635" masterDocTitle="Limosilactobacillus balticus sp. nov., Limosilactobacillus agrestis sp. nov., Limosilactobacillus albertensis sp. nov., Limosilactobacillus rudii sp. nov. and Limosilactobacillus fastidiosus sp. nov., five novel Limosilactobacillus species isolated from the vertebrate gastrointestinal tract, and proposal of six subspecies of Limosilactobacillus reuteri adapted to the gastrointestinal tract of specific vertebrate hosts" masterLastPageNumber="21" masterPageNumber="1" pageNumber="17" updateTime="1699310790206" updateUser="ExternalLinkService">
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<mods:title id="7CF513702DC175AC2DE7F4FBAC542BE8">Limosilactobacillus balticus sp. nov., Limosilactobacillus agrestis sp. nov., Limosilactobacillus albertensis sp. nov., Limosilactobacillus rudii sp. nov. and Limosilactobacillus fastidiosus sp. nov., five novel Limosilactobacillus species isolated from the vertebrate gastrointestinal tract, and proposal of six subspecies of Limosilactobacillus reuteri adapted to the gastrointestinal tract of specific vertebrate hosts</mods:title>
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<mods:namePart id="D60E24D1FCBEE5AF68D963E13D950081">Li, Fuyong</mods:namePart>
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<mods:namePart id="A21D942F9B2149E9BB79E8734FE3BE20">Cheng, Christopher C.</mods:namePart>
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<mods:roleTerm id="FE67DB1B00B4AE1C283EFB433E72E6CD">Author</mods:roleTerm>
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<mods:namePart id="68278AC577AF4051F6E5D048FC460072">Zheng, Jinshui</mods:namePart>
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<mods:namePart id="BCBDE21DB550728797ED335C426FF603">Liu, Junhong</mods:namePart>
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<mods:namePart id="E606C4F283DD133B69398892DCB10A48">Quevedo, Rodrigo Margain</mods:namePart>
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<mods:namePart id="A8BAC50249F55897DE63FF24F4F15CA6">Li, Junjie</mods:namePart>
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<mods:namePart id="BE2CE5EC1FCD73ABA8221D253A95847F">Roos, Stefan</mods:namePart>
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<mods:namePart id="73421D0C1B0384D4016422F6D979223C">Gänzle, Michael G.</mods:namePart>
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<mods:namePart id="F081C64FEB710D283577B3C3D1E0BD54">Walter, Jens</mods:namePart>
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<mods:title id="AB088E1448FE5CE2DF2442FC31696F59">International Journal of Systematic and Evolutionary Microbiology</mods:title>
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<mods:part id="FDF8C32985F22A0B95DB2A8BB075514E">
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<mods:date id="B3B3FA04985936892F0602B8E856988B">2021</mods:date>
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<mods:title id="7E955001B2707EC760D8C6CDACF9DC01">004644</mods:title>
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<mods:number id="D5CFDBC4AC69625CF9C8F12A2CE05239">2021-02-01</mods:number>
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<mods:number id="F0866ADEFD3D209415C02F9C1BB8F62F">71</mods:number>
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<mods:url id="57AE6EC610E1858A2EFC854A27C34F73">http://dx.doi.org/10.1099/ijsem.0.004644</mods:url>
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<treatment id="CD6F3526FFCB2528477EFEE0FF7B208D" ID-DOI="http://doi.org/10.5281/zenodo.6310178" ID-GBIF-Taxon="193366145" ID-Zenodo-Dep="6310178" LSID="urn:lsid:plazi:treatment:CD6F3526FFCB2528477EFEE0FF7B208D" httpUri="http://treatment.plazi.org/id/CD6F3526FFCB2528477EFEE0FF7B208D" lastPageNumber="17" pageId="16" pageNumber="17">
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<subSubSection id="0DDCD7BBFFCB2528477EFEE0FE842740" pageId="16" pageNumber="17" type="nomenclature">
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<paragraph id="45798430FFCB2528477EFEE0FE842740" blockId="16.[120,766,307,1720]" pageId="16" pageNumber="17">
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<heading id="1E31335CFFCB2528477EFEE0FE842740" allCaps="true" bold="true" fontSize="12" level="2" pageId="16" pageNumber="17" reason="3">
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<emphasis id="77B25822FFCB2528477EFEE0FE842740" bold="true" pageId="16" pageNumber="17">
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DESCRIPTION OF
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<taxonomicName id="82C6FFB3FFCB25284675FEE0FF002740" authority="Li & Cheng & Zheng & Liu & Quevedo & Li & Roos & Gänzle & Walter, 2021" authorityName="Li & Cheng & Zheng & Liu & Quevedo & Li & Roos & Gänzle & Walter" authorityYear="2021" class="Bacilli" family="Lactobacillaceae" genus="Limosilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="16" pageNumber="17" phylum="Firmicutes" rank="species" species="rudii" status="sp. nov.">
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<emphasis id="77B25822FFCB25284675FEE0FF002740" bold="true" italics="true" pageId="16" pageNumber="17">LIMOSILACTOBACILLUS RUDII</emphasis>
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</taxonomicName>
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<taxonomicNameLabel id="6C81E559FFCB252847C9FE8BFE842740" box="[206,322,344,373]" pageId="16" pageNumber="17" rank="species">SP. NOV.</taxonomicNameLabel>
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</emphasis>
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</heading>
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</paragraph>
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<subSubSection id="0DDCD7BBFFCB2528477EFE51FE6D2423" pageId="16" pageNumber="17" type="etymology">
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<paragraph id="45798430FFCB2528477EFE51FE6D2423" blockId="16.[120,766,307,1720]" pageId="16" pageNumber="17">
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<taxonomicName id="82C6FFB3FFCB2528477EFE51FEBD27AF" authorityName="Li & Cheng & Zheng & Liu & Quevedo & Li & Roos & Gänzle & Walter" authorityYear="2021" box="[121,379,386,410]" class="Bacilli" family="Lactobacillaceae" genus="Limosilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="16" pageNumber="17" phylum="Firmicutes" rank="species" species="rudii">
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<emphasis id="77B25822FFCB2528477EFE51FEBD27AF" box="[121,379,386,410]" italics="true" pageId="16" pageNumber="17">Limosilactobacillus rudii</emphasis>
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</taxonomicName>
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[ru′ di.i.i. N.L. gen. n.
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<taxonomicName id="82C6FFB3FFCB2528456BFE51FD6627AF" authorityName="Li & Cheng & Zheng & Liu & Quevedo & Li & Roos & Gänzle & Walter" authorityYear="2021" box="[620,672,386,410]" class="Bacilli" family="Lactobacillaceae" genus="Limosilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="16" pageNumber="17" phylum="Firmicutes" rank="species" species="rudii">
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<emphasis id="77B25822FFCB2528456BFE51FD6627AF" box="[620,672,386,410]" italics="true" pageId="16" pageNumber="17">rudii</emphasis>
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</taxonomicName>
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of Rudi (Vogel), in recognition of the German scientist Rudi F. Vogel, in recognition of his significant contributions to the taxonomy of lactic acid bacteria as well as the technology and microbial ecology of fermented foods].
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</paragraph>
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</subSubSection>
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<subSubSection id="0DDCD7BBFFCB2528477EFDFFFDFA2008" pageId="16" pageNumber="17" type="reference_group">
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<paragraph id="45798430FFCB2528477EFDFFFDFA2008" blockId="16.[120,766,307,1720]" pageId="16" pageNumber="17">
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<collectorName id="E833E1E6FFCB2528477EFDFFFF692471" box="[121,175,556,580]" pageId="16" pageNumber="17">Cells</collectorName>
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are
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<collectorName id="E833E1E6FFCB252847E5FDFFFE422471" box="[226,388,556,580]" pageId="16" pageNumber="17">Gram-positive</collectorName>
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, non-motile, non-spore-forming, catalase-negative and heterofermentative.
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<collectorName id="E833E1E6FFCB2528455DFD99FD572457" box="[602,657,586,610]" pageId="16" pageNumber="17">Cells</collectorName>
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are rodshaped, measuring 1.1–2.7×0.7–1.2 µm.
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<collectorName id="E833E1E6FFCB25284541FDBAFD6F24B4" box="[582,681,617,641]" pageId="16" pageNumber="17">Colonies</collectorName>
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of the
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<typeStatus id="9A7D3A92FFCB2528477EFD5AFF612494" box="[121,167,649,673]" pageId="16" pageNumber="17">type</typeStatus>
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strain STM3_1
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<superScript id="B2B32978FFCB2528464CFD54FE9224A0" attach="left" box="[331,340,647,661]" fontSize="6" pageId="16" pageNumber="17">T</superScript>
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on MRS agar plate incubated under the anaerobic condition at 37 °C for 2 days are whitish, opaque, raised, circular and entire, with a diameter of 1.0–
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<quantity id="823E29D5FFCB25284599FD15FD3524E8" box="[670,755,710,734]" metricMagnitude="-3" metricUnit="m" metricValue="2.2" pageId="16" pageNumber="17" unit="mm" value="2.2">2.2 mm</quantity>
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; colonies on MRS agar plate at the aerobic condition show similar morphological characteristics as colonies on MRS agar incubated anaerobically, but with a smaller diameter of
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<quantity id="823E29D5FFCB2528479EFC92FEDA256C" box="[153,284,833,857]" metricMagnitude="-4" metricUnit="m" metricValue="6" metricValueMax="8.0" metricValueMin="4.0" pageId="16" pageNumber="17" unit="mm" value="0.6" valueMax="0.8" valueMin="0.4">0.4–0.8 mm</quantity>
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. D-Lactate, L-lactate and gas are produced from glucose fermentation by the
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<typeStatus id="9A7D3A92FFCB25284502FCB3FDF3254D" box="[517,565,864,888]" pageId="16" pageNumber="17">type</typeStatus>
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strain STM3_1
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<collectorName id="E833E1E6FFCB252845EEFC8CFF6325A2" pageId="16" pageNumber="17">
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<superScript id="B2B32978FFCB252845EEFC8CFD372558" attach="none" box="[745,753,863,877]" fontSize="6" pageId="16" pageNumber="17">T</superScript>
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. Cell
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</collectorName>
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growth occurs at 30 and 37 °C (optimum), but not at 15 or 45 °
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<collectorName id="E833E1E6FFCB252847E2FC4DFE9D2583" box="[229,347,926,950]" pageId="16" pageNumber="17">C. Growth</collectorName>
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occurs at pH 4.0–8.0 in MRS broth.
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<collectorName id="E833E1E6FFCB2528477EFC6FFF6425E1" box="[121,162,956,980]" pageId="16" pageNumber="17">The</collectorName>
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major fatty acid of STM3_1
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||
<superScript id="B2B32978FFCB252846FEFC68FDC525FC" attach="left" box="[505,515,955,969]" fontSize="6" pageId="16" pageNumber="17">T</superScript>
|
||
is C
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||
<subScript id="D9428675FFCB25284547FC1FFD9825EE" attach="left" box="[576,606,972,987]" fontSize="6" pageId="16" pageNumber="17">16:0</subScript>
|
||
, followed by summed feature 7 (combination of C
|
||
<subScript id="D9428675FFCB25284518FC38FDFB25CC" attach="left" box="[543,573,1003,1018]" fontSize="6" pageId="16" pageNumber="17">19:1</subScript>
|
||
<emphasis id="77B25822FFCB25284547FC0FFD9525C6" box="[576,595,988,1011]" italics="true" pageId="16" pageNumber="17">ω</emphasis>
|
||
6
|
||
<emphasis id="77B25822FFCB25284566FC0FFDAD25C6" box="[609,619,988,1011]" italics="true" pageId="16" pageNumber="17">c</emphasis>
|
||
and/or C
|
||
<subScript id="D9428675FFCB252845DCFC38FD3E25CC" attach="left" box="[731,760,1003,1018]" fontSize="6" pageId="16" pageNumber="17">19:0</subScript>
|
||
cyclo
|
||
<emphasis id="77B25822FFCB252847BBFC28FF092227" box="[188,207,1019,1042]" italics="true" pageId="16" pageNumber="17">ω</emphasis>
|
||
10
|
||
<emphasis id="77B25822FFCB252847ECFC28FF332227" box="[235,245,1019,1042]" italics="true" pageId="16" pageNumber="17">c</emphasis>
|
||
) and C
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||
<subScript id="D9428675FFCB25284649FBD9FEAA222D" attach="left" box="[334,364,1034,1049]" fontSize="6" pageId="16" pageNumber="17">19:0</subScript>
|
||
cyclo
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||
<emphasis id="77B25822FFCB252846BFFC28FE0D2227" box="[440,459,1019,1042]" italics="true" pageId="16" pageNumber="17">ω</emphasis>
|
||
8
|
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<emphasis id="77B25822FFCB252846DEFC28FE252227" box="[473,483,1019,1042]" italics="true" pageId="16" pageNumber="17">c</emphasis>
|
||
.
|
||
<collectorName id="E833E1E6FFCB252846F4FC29FDE12227" box="[499,551,1018,1042]" pageId="16" pageNumber="17">Acid</collectorName>
|
||
is produced from L-arabinose, D-ribose, D-xylose, D-galactose, D-glucose, aesculin, maltose, lactose, melibiose, sucrose and raffinose; acid is not produced from D-fructose,D-mannose, methyl α- D-glucopyranoside, potassium gluconate, glycerol, erythritol, D-arabinose,L-xylose,D-adonitol, methyl
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||
<emphasis id="77B25822FFCB252845C0FB47FD122299" box="[711,724,1172,1196]" italics="true" pageId="16" pageNumber="17">β</emphasis>
|
||
-
|
||
<collectorName id="E833E1E6FFCB252845D9FB46FEE522FE" pageId="16" pageNumber="17">Dxylopyranoside</collectorName>
|
||
, L-sorbose,L-rhamnose, dulcitol, inositol, D-mannitol, D-sorbitol, methyl α- D-mannopyranoside,
|
||
<emphasis id="77B25822FFCB2528477EFB22FF4A233D" box="[121,140,1265,1288]" italics="true" pageId="16" pageNumber="17">N</emphasis>
|
||
-acetylglucosamine, amygdalin, arbutin, salicin, cellobiose, trehalose, inulin, melezitose, starch, glycogen, xylitol, gentiobiose, turanose, D-lyxose, D-tagatose, D-fucose, L-fucose,D-arabitol,L-arabitol, potassium 2-ketogluconate or potassium 5-ketogluconate.
|
||
<collectorName id="E833E1E6FFCB252846CCFABFFE3523B1" box="[459,499,1388,1412]" pageId="16" pageNumber="17">The</collectorName>
|
||
cell-wall peptidoglycan of STM3_1
|
||
<superScript id="B2B32978FFCB252847F9FA59FECE23AD" attach="left" box="[254,264,1418,1432]" fontSize="6" pageId="16" pageNumber="17">T</superScript>
|
||
contains the amino acids alanine (
|
||
<collectorName id="E833E1E6FFCB252845B8FA58FD2D2396" box="[703,747,1419,1443]" pageId="16" pageNumber="17">Ala</collectorName>
|
||
), glutamic acid (
|
||
<collectorName id="E833E1E6FFCB2528461FFA79FE8323F7" box="[280,325,1450,1474]" pageId="16" pageNumber="17">Glu</collectorName>
|
||
), lysine (
|
||
<collectorName id="E833E1E6FFCB252846A3FA79FE0823F7" box="[420,462,1450,1474]" pageId="16" pageNumber="17">Lys</collectorName>
|
||
), aspartic acid (
|
||
<collectorName id="E833E1E6FFCB25284572FA79FD6323F7" box="[629,677,1450,1474]" pageId="16" pageNumber="17">Asp</collectorName>
|
||
), serine (
|
||
<collectorName id="E833E1E6FFCB25284787FA1AFF6023D4" box="[128,166,1481,1505]" pageId="16" pageNumber="17">Ser</collectorName>
|
||
) and threonine (
|
||
<collectorName id="E833E1E6FFCB2528465EFA1BFE4323D5" box="[345,389,1480,1504]" pageId="16" pageNumber="17">Thr</collectorName>
|
||
), with the molar ratio 1.1 (
|
||
<collectorName id="E833E1E6FFCB25284598FA1BFD0F23D5" box="[671,713,1480,1504]" pageId="16" pageNumber="17">Ala</collectorName>
|
||
):1.0 (
|
||
<collectorName id="E833E1E6FFCB25284787FA34FF7623CA" box="[128,176,1511,1535]" pageId="16" pageNumber="17">Asp</collectorName>
|
||
):1.0 (
|
||
<collectorName id="E833E1E6FFCB252847ECFA34FED123CA" box="[235,279,1511,1535]" pageId="16" pageNumber="17">Glu</collectorName>
|
||
):0.8 (
|
||
<collectorName id="E833E1E6FFCB25284653FA34FEB823CA" box="[340,382,1511,1535]" pageId="16" pageNumber="17">Lys</collectorName>
|
||
):0.1 (
|
||
<collectorName id="E833E1E6FFCB252846BEFA34FE2323CA" box="[441,485,1511,1535]" pageId="16" pageNumber="17">Thr</collectorName>
|
||
), suggesting the cell-wall peptidoglycan
|
||
<typeStatus id="9A7D3A92FFCB25284618F9D4FE89202A" box="[287,335,1543,1567]" pageId="16" pageNumber="17">type</typeStatus>
|
||
A4α L-Lys–D-Asp by [
|
||
<bibRefCitation id="2157F9C1FFCB25284551F9D5FDB1202B" author="Schumann P." box="[598,631,1542,1566]" pageId="16" pageNumber="17" pagination="101 - 129" refId="ref16862" refString="38. Schumann P. Peptidoglycan structure. In: Rainey F, Oren A (editors). Methods in Microbiology. Academic Press; 2011. pp. 101 - 129." type="book chapter" year="2011">38</bibRefCitation>
|
||
].
|
||
<collectorName id="E833E1E6FFCB2528458BF9D5FD73202B" box="[652,693,1542,1566]" pageId="16" pageNumber="17">The</collectorName>
|
||
DNA G+C content of STM3_1
|
||
<superScript id="B2B32978FFCB25284692F9F7FE592007" attach="left" box="[405,415,1572,1586]" fontSize="6" pageId="16" pageNumber="17">T</superScript>
|
||
is 38.5mol%.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="0DDCD7BBFFCB25284542F9F6FF7B208D" pageId="16" pageNumber="17" type="reference_group">
|
||
<paragraph id="45798430FFCB25284542F9F6FF7B208D" blockId="16.[120,766,307,1720]" pageId="16" pageNumber="17">
|
||
<materialsCitation id="F5AE8E6DFFCB25284542F9F6FF7C208D" ID-GBIF-Occurrence="3465844303" pageId="16" pageNumber="17" typeStatus="holotype">
|
||
<collectorName id="E833E1E6FFCB25284542F9F6FDA82008" box="[581,622,1573,1597]" pageId="16" pageNumber="17">The</collectorName>
|
||
<typeStatus id="9A7D3A92FFCB25284570F9F6FD612008" box="[631,679,1573,1597]" pageId="16" pageNumber="17">type</typeStatus>
|
||
strain, STM3_1
|
||
<superScript id="B2B32978FFCB252847D2F991FF182065" attach="left" box="[213,222,1602,1616]" fontSize="6" pageId="16" pageNumber="17">T</superScript>
|
||
(=DSM 110572
|
||
<superScript id="B2B32978FFCB25284680F991FE562065" attach="right" box="[391,400,1602,1616]" fontSize="6" pageId="16" pageNumber="17">T</superScript>
|
||
=LMG 31631
|
||
<superScript id="B2B32978FFCB25284518F991FDEE2065" attach="right" box="[543,552,1602,1616]" fontSize="6" pageId="16" pageNumber="17">T</superScript>
|
||
), was isolated from the faecal sample of striped mouse (
|
||
<taxonomicName id="82C6FFB3FFCB25284514F9B0FD2B204E" ID-CoL="4RW37" baseAuthorityName="Sparrman" baseAuthorityYear="1784" box="[531,749,1635,1659]" class="Mammalia" family="Muridae" genus="Rhabdomys" kingdom="Animalia" order="Rodentia" pageId="16" pageNumber="17" phylum="Chordata" rank="species" species="pumilio">
|
||
<emphasis id="77B25822FFCB25284514F9B0FD2B204E" box="[531,749,1635,1659]" italics="true" pageId="16" pageNumber="17">Rhabdomys pumilio</emphasis>
|
||
</taxonomicName>
|
||
) raised at
|
||
<location id="4019D2EBFFCB252847E7F951FE7420AC" LSID="urn:lsid:plazi:treatment:CD6F3526FFCB2528477EFEE0FF7B208D:4019D2EBFFCB252847E7F951FE7420AC" box="[224,434,1665,1690]" country="United States of America" municipality="Aquarium" name="Henry Doorly Zoo" pageId="16" pageNumber="17">Henry Doorly Zoo</location>
|
||
and
|
||
<collectingMunicipality id="A51D1E4AFFCB252846ECF952FD9D20AC" box="[491,603,1665,1689]" pageId="16" pageNumber="17">Aquarium</collectingMunicipality>
|
||
(
|
||
<collectorName id="E833E1E6FFCB2528456BF952FD3520AC" box="[620,755,1665,1689]" pageId="16" pageNumber="17">Omaha, NE</collectorName>
|
||
,
|
||
<collectingCountry id="3DD1C4A0FFCB2528477EF973FF74208D" box="[121,178,1696,1720]" name="United States of America" pageId="16" pageNumber="17">USA</collectingCountry>
|
||
)
|
||
</materialsCitation>
|
||
.
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |