199 lines
17 KiB
XML
199 lines
17 KiB
XML
<document id="1606F1CDAFD402044D15EA2EB731F988" ID-CLB-Dataset="20540" ID-DOI="10.1099/ijsem.0.003312" ID-GBIF-Dataset="91beeba1-127f-4cd2-91ea-5b1e8758de74" ID-ISSN="1466-5034" ID-Zenodo-Dep="6223836" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="existingObjects,plazi" IM.taxonomicNames_approvedBy="felipe" checkinTime="1645465782622" checkinUser="felipe" docAuthor="Sorokin, Dimitry Y., Khijniak, Tatiana V., Elcheninov, Alexander G., Toshchakov, Stepan V., Kostrikina, Nadezhda A., Bale, Nicole J., Sinninghe Damsté, Jaap S. & Kublanov, Ilya V." docDate="2019" docId="7960BC1306199635842CFD00FA76F926" docLanguage="en" docName="IntJSystEvolMicrobiol.69.5.1327-1335.pdf" docOrigin="International Journal of Systematic and Evolutionary Microbiology 69 (5)" docSource="http://dx.doi.org/10.1099/ijsem.0.003312" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.3:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="3" docTitle="Halococcoides cellulosivorans Sorokin & Khijniak & Elcheninov & Toshchakov & Kostrikina & Bale & Sinninghe Damsté & Kublanov 2019, SP. NOV." docType="treatment" docVersion="9" lastPageNumber="1334" masterDocId="8559C46B061E96328717FFD8FFDBFF8F" masterDocTitle="Halococcoides cellulosivorans gen. nov., sp. nov., an extremely halophilic cellulose-utilizing haloarchaeon from hypersaline lakes" masterLastPageNumber="1335" masterPageNumber="1327" pageNumber="1334" updateTime="1702001632827" updateUser="plazi">
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<mods:title id="5D20E630BC73A1AFB79567A31882809C">Halococcoides cellulosivorans gen. nov., sp. nov., an extremely halophilic cellulose-utilizing haloarchaeon from hypersaline lakes</mods:title>
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<mods:namePart id="6D95F69AB85DE3656A48B21DC0BA23C9">Sorokin, Dimitry Y.</mods:namePart>
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<mods:namePart id="24FC689507F123430CEA60E1BF7C76EE">Khijniak, Tatiana V.</mods:namePart>
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<mods:namePart id="FE03C2BEA7B804604D65AAEFD84E005B">Elcheninov, Alexander G.</mods:namePart>
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<mods:namePart id="1632D3BF76ACE594ADE5A8A411D40686">Toshchakov, Stepan V.</mods:namePart>
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<mods:namePart id="0C6A084A3A4495B490F8D6D5B07C0670">Kostrikina, Nadezhda A.</mods:namePart>
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<mods:namePart id="A458A2036F7E50D65AA48ADACE220301">Bale, Nicole J.</mods:namePart>
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<mods:namePart id="AEF54F7768E686932682D7A30EBE2D73">Sinninghe Damsté, Jaap S.</mods:namePart>
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<mods:namePart id="B7FDA50C39A4E94992D863CAF20E66AB">Kublanov, Ilya V.</mods:namePart>
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<mods:title id="F86BF6F3ED81465C20B4B0A4423F19A3">International Journal of Systematic and Evolutionary Microbiology</mods:title>
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<mods:part id="EB41513E41255FA2213C1757C4EBEC3B">
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<mods:date id="ED62F05A5201DCBC419D10D92D0A4F97">2019</mods:date>
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<mods:number id="0DF1141A8DF7A77BA90352541F96EEC5">2019-05-01</mods:number>
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<mods:number id="D61636730BCA97487E87A2E5EE2A5D7E">69</mods:number>
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<mods:number id="F772621F74363CDE66B098DC291DD852">5</mods:number>
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<mods:start id="C3EE937C100B56535C66497AF2AB4A54">1327</mods:start>
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<mods:end id="4E3D539ED33838AF90C260FE589EA2D0">1335</mods:end>
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<mods:url id="F7AE6EEEF66B7F17D82ACF88A092028D">http://dx.doi.org/10.1099/ijsem.0.003312</mods:url>
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<mods:classification id="A6EE8AAE18CCCDD170FFF59ADA695C02">journal article</mods:classification>
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<mods:identifier id="D6F3A2658959E611101F5B15F4A111C7" type="CLB-Dataset">20540</mods:identifier>
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<mods:identifier id="F5CC674F0CA78294A74B0D4775ABDC22" type="DOI">10.1099/ijsem.0.003312</mods:identifier>
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<mods:identifier id="3D5CEC3195C4F94741301137F08E2E99" type="ISSN">1466-5034</mods:identifier>
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<mods:identifier id="1A866D8C6DA85588E0D158EA88021775" type="Zenodo-Dep">6223836</mods:identifier>
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<treatment id="7960BC1306199635842CFD00FA76F926" ID-DOI="http://doi.org/10.5281/zenodo.6314475" ID-GBIF-Taxon="193437791" ID-Zenodo-Dep="6314475" LSID="urn:lsid:plazi:treatment:7960BC1306199635842CFD00FA76F926" httpUri="http://treatment.plazi.org/id/7960BC1306199635842CFD00FA76F926" lastPageNumber="1334" pageId="7" pageNumber="1334">
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<subSubSection id="B9D35E8E06199635842CFD00FB1DFC95" pageId="7" pageNumber="1334" type="nomenclature">
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<paragraph id="F1760D0506199635842CFD00FB1DFC95" blockId="7.[827,1466,728,1705]" pageId="7" pageNumber="1334">
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<heading id="AA3EBA6906199635842CFD00FB1DFC95" allCaps="true" bold="true" fontSize="12" level="2" pageId="7" pageNumber="1334" reason="3">
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<emphasis id="C3BDD11706199635842CFD00FB1DFC95" bold="true" pageId="7" pageNumber="1334">
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DESCRIPTION OF
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<taxonomicName id="36C97686061996358327FD00FB9AFC95" authority="Sorokin & Khijniak & Elcheninov & Toshchakov & Kostrikina & Bale & Sinninghe Damsté & Kublanov, 2019" authorityName="Sorokin & Khijniak & Elcheninov & Toshchakov & Kostrikina & Bale & Sinninghe Damsté & Kublanov" authorityYear="2019" class="Halobacteria" family="Haloarculaceae" genus="Halococcoides" higherTaxonomySource="GBIF" kingdom="Archaea" order="Halobacteriales" pageId="7" pageNumber="1334" phylum="Euryarchaeota" rank="species" species="cellulosivorans" status="sp. nov.">
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<emphasis id="C3BDD117061996358327FD00FB9AFC95" bold="true" italics="true" pageId="7" pageNumber="1334">HALOCOCCOIDES CELLULOSIVORANS</emphasis>
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</taxonomicName>
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<taxonomicNameLabel id="D88E6C6C06199635835DFD25FB1DFC95" box="[1098,1222,765,794]" pageId="7" pageNumber="1334" rank="species">SP. NOV.</taxonomicNameLabel>
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</emphasis>
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection id="B9D35E8E06199635842CFCF1FAF9FCF1" pageId="7" pageNumber="1334" type="etymology">
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<paragraph id="F1760D0506199635842CFCF1FAF9FCF1" blockId="7.[827,1466,728,1705]" pageId="7" pageNumber="1334">
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<taxonomicName id="36C9768606199635842CFCF1FBABFCCE" authorityName="Sorokin & Khijniak & Elcheninov & Toshchakov & Kostrikina & Bale & Sinninghe Damsté & Kublanov" authorityYear="2019" box="[827,1136,809,833]" class="Halobacteria" family="Haloarculaceae" genus="Halococcoides" higherTaxonomySource="GBIF" kingdom="Archaea" order="Halobacteriales" pageId="7" pageNumber="1334" phylum="Euryarchaeota" rank="species" species="cellulosivorans">
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<emphasis id="C3BDD11706199635842CFCF1FBABFCCE" box="[827,1136,809,833]" italics="true" pageId="7" pageNumber="1334">Halococcoides cellulosivorans</emphasis>
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</taxonomicName>
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(cel.lu.lo.si.vo′ rans N.L. neut. n.
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<emphasis id="C3BDD117061996358442FC90FC18FCEF" box="[853,963,840,864]" italics="true" pageId="7" pageNumber="1334">cellulosum</emphasis>
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, cellulose; L. pres. part.
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<emphasis id="C3BDD1170619963583D6FC91FADCFCEF" box="[1217,1287,841,864]" italics="true" pageId="7" pageNumber="1334">vorans</emphasis>
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, devouring; N.L. part. adj.
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<taxonomicName id="36C97686061996358489FCBEFBEDFCF1" authorityName="Sorokin & Khijniak & Elcheninov & Toshchakov & Kostrikina & Bale & Sinninghe Damsté & Kublanov" authorityYear="2019" box="[926,1078,870,894]" class="Halobacteria" family="Haloarculaceae" genus="Halococcoides" higherTaxonomySource="GBIF" kingdom="Archaea" order="Halobacteriales" pageId="7" pageNumber="1334" phylum="Euryarchaeota" rank="species" species="cellulosivorans">
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<emphasis id="C3BDD117061996358489FCBEFBEDFCF1" box="[926,1078,870,894]" italics="true" pageId="7" pageNumber="1334">cellulosivorans</emphasis>
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</taxonomicName>
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, cellulose-devouring).
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</paragraph>
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</subSubSection>
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<subSubSection id="B9D35E8E06199635842CFC4DFA5CF9E4" pageId="7" pageNumber="1334" type="description">
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<paragraph id="F1760D0506199635842CFC4DFA5CF9E4" blockId="7.[827,1466,728,1705]" pageId="7" pageNumber="1334">
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<collectorName id="5C3C68D306199635842CFC4DFCB5FC22" box="[827,878,917,941]" pageId="7" pageNumber="1334">Cells</collectorName>
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are non-motile cocci, 0.8–3 µm, with a thin monolayer cell wall.
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<collectorName id="5C3C68D3061996358489FC6CFC1CFC43" box="[926,967,948,972]" pageId="7" pageNumber="1334">The</collectorName>
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colonies on amorphous cellulose agar are flat, up to
|
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<quantity id="3631A0E006199635846AFC0AFC60FC65" box="[893,955,978,1002]" metricMagnitude="-3" metricUnit="m" metricValue="1.0" pageId="7" pageNumber="1334" unit="mm" value="1.0">1 mm</quantity>
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, soft and slightly orange.
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<collectorName id="5C3C68D30619963583C3FC0BFB3EFC65" box="[1236,1253,979,1002]" pageId="7" pageNumber="1334">It</collectorName>
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is a strictly aerobic (catalase/oxidase positive) saccharolytic specialized on utilization of native forms of insoluble cellulose and xylan.
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<collectorName id="5C3C68D306199635826FFBD7FCAAFBC9" pageId="7" pageNumber="1334">Cellobiose</collectorName>
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is the only soluble sugar utilized for growth.
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<collectorName id="5C3C68D3061996358298FBF6FA63FBC9" box="[1423,1464,1070,1094]" pageId="7" pageNumber="1334">The</collectorName>
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nitrogen source is ammonium.
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<collectorName id="5C3C68D306199635839DFB94FB0EFBEB" box="[1162,1237,1100,1124]" pageId="7" pageNumber="1334">Nitrate</collectorName>
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and urea are not utilized.
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<collectorName id="5C3C68D306199635846EFBB3FC75FB0D" box="[889,942,1131,1154]" pageId="7" pageNumber="1334">Does</collectorName>
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not grow anaerobically either by fermentation or anaerobic respiration.
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<collectorName id="5C3C68D306199635832EFB52FBB5FB2E" box="[1081,1134,1162,1185]" pageId="7" pageNumber="1334">Does</collectorName>
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not utilize organic acids or organic nitrogen compounds as carbon and energy source.
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<collectorName id="5C3C68D306199635842CFB1FFC41FB50" box="[827,922,1223,1247]" pageId="7" pageNumber="1334">High Mg</collectorName>
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is not required for growth.
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<collectorName id="5C3C68D30619963583ABFB1FFAF4FB50" box="[1212,1327,1223,1247]" pageId="7" pageNumber="1334">Proteolytic</collectorName>
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and lipolytic activity are absent.
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<collectorName id="5C3C68D3061996358317FB3DFBE4FB72" box="[1024,1087,1253,1277]" pageId="7" pageNumber="1334">Strain</collectorName>
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HArcel1
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<superScript id="06BCA04D061996358389FB07FB71FB7F" attach="left" box="[1182,1194,1247,1264]" fontSize="7" pageId="7" pageNumber="1334">T</superScript>
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is an extremely halophilic neutrophile, with the
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<collectorName id="5C3C68D3061996358334FADCFB81FA93" box="[1059,1114,1284,1308]" pageId="7" pageNumber="1334">NaCl</collectorName>
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||
range for growth between 3 and 5 M (optimum at 3.5–4 M) and the pH range from 6.5 to 8.0 (optimum, pH 7.0–7.2).
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<collectorName id="5C3C68D3061996358328FA99FBB3FAD6" box="[1087,1128,1345,1369]" pageId="7" pageNumber="1334">The</collectorName>
|
||
maximum growth temperature at 4
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<collectorName id="5C3C68D306199635847DFAB8FC1BFAF8" box="[874,960,1375,1399]" pageId="7" pageNumber="1334">M NaCl</collectorName>
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with cellobiose as substrate is 50
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<superScript id="06BCA04D061996358232FA85FAF7FAE7" attach="right" box="[1317,1324,1373,1384]" fontSize="6" pageId="7" pageNumber="1334">Ǫ</superScript>
|
||
C (optimum, 40–42
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||
<superScript id="06BCA04D061996358497FAA4FC5CFA08" attach="right" box="[896,903,1404,1415]" fontSize="6" pageId="7" pageNumber="1334">Ǫ</superScript>
|
||
C).
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<collectorName id="5C3C68D30619963584B8FAA6FC03FA19" box="[943,984,1406,1430]" pageId="7" pageNumber="1334">The</collectorName>
|
||
core membrane lipids are dominated by C
|
||
<subScript id="6D4D0F4006199635828BFA50FA74FA16" attach="left" box="[1436,1455,1416,1433]" fontSize="7" pageId="7" pageNumber="1334">20</subScript>
|
||
- C
|
||
<subScript id="6D4D0F4006199635845BFA7EFC84FA38" attach="left" box="[844,863,1446,1463]" fontSize="7" pageId="7" pageNumber="1334">20</subScript>
|
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and C
|
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<subScript id="6D4D0F400619963584BBFA7EFC64FA38" attach="right" box="[940,959,1446,1463]" fontSize="7" pageId="7" pageNumber="1334">25</subScript>
|
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-C
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<subScript id="6D4D0F400619963584CDFA7EFC36FA38" attach="left" box="[986,1005,1446,1463]" fontSize="7" pageId="7" pageNumber="1334">20</subScript>
|
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DGE with 1 C
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<subScript id="6D4D0F40061996358387FA7EFB78FA38" attach="left" box="[1168,1187,1446,1463]" fontSize="7" pageId="7" pageNumber="1334">25</subScript>
|
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MGE and 2 C
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<subScript id="6D4D0F40061996358253FA7EFA8CFA38" attach="left" box="[1348,1367,1446,1463]" fontSize="7" pageId="7" pageNumber="1334">20</subScript>
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MGE as minor components.
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<collectorName id="5C3C68D306199635830DFA63FB98FA5C" box="[1050,1091,1467,1491]" pageId="7" pageNumber="1334">The</collectorName>
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identified intact membrane polar lipids include PGP-Me and PG as major components, and diglycosyl diether glycolipid and phosphatidylglycerol sulfate sulfolipid as minor components.
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<collectorName id="5C3C68D30619963583BAF9CFFB2DF9A0" box="[1197,1270,1559,1583]" pageId="7" pageNumber="1334">The G</collectorName>
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+C content of the genomic DNA in the
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<typeStatus id="2E72B3A7061996358338F9EEFB87F9C1" box="[1071,1116,1590,1614]" pageId="7" pageNumber="1334">type</typeStatus>
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||
strain is 65.74 mol% (genome).
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||
<collectorName id="5C3C68D306199635842CF98CFCBFF9E3" box="[827,868,1620,1644]" pageId="7" pageNumber="1334">The</collectorName>
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habitat is hypersaline lakes with near-neutral pH.
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</paragraph>
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</subSubSection>
|
||
<subSubSection id="B9D35E8E061996358298F98CFA76F926" pageId="7" pageNumber="1334" type="materials_examined">
|
||
<paragraph id="F1760D05061996358298F98CFA76F926" blockId="7.[827,1466,728,1705]" pageId="7" pageNumber="1334">
|
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<materialsCitation id="41A10758061996358298F98CFA76F926" ID-GBIF-Occurrence="3470291301" collectionCode="HArcel" pageId="7" pageNumber="1334" specimenCode="HArcel1T=JCM 31941T=UNIQEM U975T" specimenCount="1" typeStatus="holotype">
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The
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<typeStatus id="2E72B3A706199635842CF9ABFCB3F904" box="[827,872,1651,1675]" pageId="7" pageNumber="1334">type</typeStatus>
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strain is
|
||
<specimenCode id="A16FA57E0619963584D1F9AAFA58F9F2" box="[966,1411,1644,1674]" collectionCode="HArcel" pageId="7" pageNumber="1334">
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||
HArcel1
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|
||
=JCM 31941
|
||
<superScript id="06BCA04D0619963583A5F9B4FB65F9F2" attach="none" box="[1202,1214,1644,1661]" fontSize="7" pageId="7" pageNumber="1334">T</superScript>
|
||
=UNIQEM U975
|
||
<superScript id="06BCA04D061996358260F9B4FA58F9F2" attach="none" box="[1399,1411,1644,1661]" fontSize="7" pageId="7" pageNumber="1334">T</superScript>
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||
</specimenCode>
|
||
. The full genome accession number in the GenBank is
|
||
<accessionNumber id="EE9A90E606199635822EF949FA72F926" box="[1337,1449,1681,1705]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/CP028858" pageId="7" pageNumber="1334">CP028858</accessionNumber>
|
||
.
|
||
</materialsCitation>
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |