167 lines
12 KiB
XML
167 lines
12 KiB
XML
<document ID-DOI="http://dx.doi.org/10.3897/mycokeys.7.4508" ID-GBIF-Dataset="471f4b4d-525a-4b91-8c41-28b8c7ca2944" ID-GBIF-Taxon="152023593" ID-Pensoft-Pub="1314-4049-7-1" ModsDocAuthor="" ModsDocDate="2013" ModsDocID="1314-4049-7-1" ModsDocOrigin="MycoKeys 7" ModsDocTitle="DNA barcode identification of lichen-forming fungal species in the Rhizoplaca melanophthalma species-complex (Lecanorales, Lecanoraceae), including five new species" checkinTime="1451252987099" checkinUser="pensoft" docAuthor="Leavitt, Steven D., Fernandez-Mendoza, Fernando, Perez-Ortega, Sergio, Sohrabi, Mohammad, Divakar, Pradeep K., Lumbsch, H. Thorsten & Clair, Larry L. St." docDate="2013" docId="8877EF1DC7DF07E05F7CBFED71EE1896" docLanguage="en" docName="MycoKeys 7: 1-22" docOrigin="MycoKeys 7" docSource="http://dx.doi.org/10.3897/mycokeys.7.4508" docTitle="Rhizoplaca porterii S. Leavitt, F. Fernandez-Mendoza, Lumbsch, Sohrabi & L. St. Clair, sp. nov." docType="treatment" docVersion="2" lastPageId="11" lastPageNumber="12" masterDocId="FF9AFFE4FFB5985F4C434926FF83FFB8" masterDocTitle="DNA barcode identification of lichen-forming fungal species in the Rhizoplaca melanophthalma species-complex (Lecanorales, Lecanoraceae), including five new species" masterLastPageNumber="22" masterPageNumber="1" pageId="10" pageNumber="11" updateTime="1643529466877" updateUser="ExternalLinkService">
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<mods:mods xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo>
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<mods:title>DNA barcode identification of lichen-forming fungal species in the Rhizoplaca melanophthalma species-complex (Lecanorales, Lecanoraceae), including five new species</mods:title>
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</mods:titleInfo>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Leavitt, Steven D.</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Fernandez-Mendoza, Fernando</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Perez-Ortega, Sergio</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Sohrabi, Mohammad</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Divakar, Pradeep K.</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Lumbsch, H. Thorsten</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Clair, Larry L. St.</mods:namePart>
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</mods:name>
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<mods:typeOfResource>text</mods:typeOfResource>
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<mods:relatedItem type="host">
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<mods:titleInfo>
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<mods:title>MycoKeys</mods:title>
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</mods:titleInfo>
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<mods:part>
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<mods:date>2013</mods:date>
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<mods:detail type="volume">
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<mods:number>7</mods:number>
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</mods:detail>
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<mods:extent unit="page">
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<mods:start>1</mods:start>
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<mods:end>22</mods:end>
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</mods:extent>
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</mods:part>
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</mods:relatedItem>
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<mods:location>
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<mods:url>http://dx.doi.org/10.3897/mycokeys.7.4508</mods:url>
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</mods:location>
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<mods:classification>journal article</mods:classification>
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<mods:identifier type="DOI">http://dx.doi.org/10.3897/mycokeys.7.4508</mods:identifier>
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<mods:identifier type="Pensoft-Pub">1314-4049-7-1</mods:identifier>
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</mods:mods>
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<treatment ID-GBIF-Taxon="152023593" LSID="urn:lsid:plazi:treatment:8877EF1DC7DF07E05F7CBFED71EE1896" httpUri="http://treatment.plazi.org/id/8877EF1DC7DF07E05F7CBFED71EE1896" lastPageId="11" lastPageNumber="12" pageId="10" pageNumber="11">
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<subSubSection pageId="10" pageNumber="11" type="nomenclature">
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<paragraph pageId="10" pageNumber="11">
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<taxonomicName LSID="MycoBank no. MB 803478" authority="S. Leavitt, F. Fernandez-Mendoza, Lumbsch, Sohrabi & L. St. Clair" class="Lecanoromycetes" family="Lecanoraceae" genus="Rhizoplaca" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Rhizoplaca porterii" order="Lecanorales" pageId="10" pageNumber="11" phylum="Ascomycota" rank="species" species="porterii">
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Rhizoplaca porterii S. Leavitt, F.
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<normalizedToken originalValue="Fernández-Mendoza">Fernandez-Mendoza</normalizedToken>
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, Lumbsch, Sohrabi & L. St. Clair
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</taxonomicName>
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<taxonomicNameLabel pageId="10" pageNumber="11">sp. nov.</taxonomicNameLabel>
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</paragraph>
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</subSubSection>
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<subSubSection pageId="10" pageNumber="11" type="type">
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<paragraph pageId="10" pageNumber="11">Type.</paragraph>
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<paragraph pageId="10" pageNumber="11">
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USA, Utah, Wayne County, Thousand Lakes Mountain, vicinity of 'Flat
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<normalizedToken originalValue="Top’">Top'</normalizedToken>
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, near summit,
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<geoCoordinate direction="north" orientation="latitude" precision="5" value="38.4432">38.4432°N</geoCoordinate>
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,
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<geoCoordinate direction="west" orientation="longitude" precision="5" value="-111.4703">111.4703°W</geoCoordinate>
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, on basalt, 3400 m alt., October 1997, Lyndon D. Porter BRY-C55096 (holotype BRY).
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</paragraph>
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</subSubSection>
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<subSubSection pageId="10" pageNumber="11" type="description">
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<paragraph pageId="10" pageNumber="11">Description.</paragraph>
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<paragraph pageId="10" pageNumber="11">
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Morphologically similar to
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<taxonomicName class="Lecanoromycetes" family="Lecanoraceae" genus="Rhizoplaca" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Rhizoplaca melanophthalma" order="Lecanorales" pageId="10" pageNumber="11" phylum="Ascomycota" rank="species" species="melanophthalma">Rhizoplaca melanophthalma</taxonomicName>
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sensu stricto, but consists of specimens recovered within 'clade
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<normalizedToken originalValue="IVd’">IVd'</normalizedToken>
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in
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<bibRefCitation author="Leavitt, SD" journalOrPublisher="Molecular Phylogenetics and Evolution" pageId="16" pageNumber="17" pagination="587 - 602" title="Complex patterns of speciation in cosmopolitan '' rock posy' ' lichens - Discovering and delimiting cryptic fungal species in the lichen-forming Rhizoplaca melanophthalma species-complex (Lecanoraceae, Ascomycota)." url="10.1016/j.ympev.2011.03.020" volume="59" year="2011 a">Leavitt et al. (2011a)</bibRefCitation>
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, which is supported as a lineage distinct from all other populations according to coalescent-based genetic analysis of multiple genetic loci. This species is also characterized by the absence of a group I intron in the nuclear SSU rDNA at the 1516 position (
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<bibRefCitation author="Gutierrez, G" journalOrPublisher="Journal of Molecular Evolution" pageId="16" pageNumber="17" pagination="181 - 195" title="Patterns of group i intron presence in nuclear SSU rDNA of the lichen family Parmeliaceae." url="10.1007/s00239-005-0313-y" volume="64" year="2007">
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<normalizedToken originalValue="Gutiérrez">Gutierrez</normalizedToken>
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et al. 2007
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</bibRefCitation>
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), which is present in all other species within the
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<taxonomicName class="Lecanoromycetes" family="Lecanoraceae" genus="Rhizoplaca" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Rhizoplaca melanophthalma" order="Lecanorales" pageId="10" pageNumber="11" phylum="Ascomycota" rank="species" species="melanophthalma">Rhizoplaca melanophthalma</taxonomicName>
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species-complex. The mean genetic distances among ITS haplotypes was estimated to be 0.002
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<normalizedToken originalValue="±">+/-</normalizedToken>
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0.002.
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</paragraph>
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<paragraph pageId="10" pageNumber="11">
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<normalizedToken originalValue="Chemistry–">Chemistry-</normalizedToken>
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Usnic acid (major); usually with psoromic (major), constipatic (minor), dehydroconstipatic (minor), dehydroprotocetraric (minor), subpsoromic (minor), demethylpsoromic (minor), and 2'-O-demethylsubpsoromic (minor or trace) acids.
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</paragraph>
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</subSubSection>
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<subSubSection pageId="10" pageNumber="11" type="reference phylogeny">
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<paragraph pageId="10" pageNumber="11">Reference phylogeny.</paragraph>
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<paragraph pageId="10" pageNumber="11">
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<bibRefCitation author="Leavitt, SD" journalOrPublisher="Molecular Phylogenetics and Evolution" pageId="16" pageNumber="17" pagination="587 - 602" title="Complex patterns of speciation in cosmopolitan '' rock posy' ' lichens - Discovering and delimiting cryptic fungal species in the lichen-forming Rhizoplaca melanophthalma species-complex (Lecanoraceae, Ascomycota)." url="10.1016/j.ympev.2011.03.020" volume="59" year="2011 a">Leavitt et al. 2011a</bibRefCitation>
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(fig. 5, 'clade
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<normalizedToken originalValue="IVd’">IVd'</normalizedToken>
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).
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</paragraph>
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</subSubSection>
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<subSubSection pageId="10" pageNumber="11" type="reference sequences">
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<paragraph pageId="10" pageNumber="11">Reference sequences.</paragraph>
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<paragraph pageId="10" pageNumber="11">GenBank Nos. HM577327 (ITS), HM57710 (IGS), HM577461 (MCM 7), and HM576971 (β-tubulin).</paragraph>
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<paragraph pageId="10" pageNumber="11">
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Phylogenetic notes: A monophyletic lineage in both concatenated multilocus gene tree with weak statistical support (ML bootstrap <50%; posterior probability <0.5), and with strong statistical support in the ITS gene topology (ML bootstrap = 94%, this study); and strong speciation probability inferred from multiple loci (BPP speciation probability ≥ 0.97).
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<taxonomicName class="Lecanoromycetes" family="Lecanoraceae" genus="Rhizoplaca" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Rhizoplaca porterii" order="Lecanorales" pageId="10" pageNumber="11" phylum="Ascomycota" rank="species" species="porterii">Rhizoplaca porterii</taxonomicName>
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belongs to a closely related, and well-supported, monophyletic lineage including
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<taxonomicName class="Lecanoromycetes" family="Lecanoraceae" genus="Rhizoplaca" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Rhizoplaca occulta" order="Lecanorales" pageId="10" pageNumber="11" phylum="Ascomycota" rank="species" species="occulta">Rhizoplaca occulta</taxonomicName>
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,
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<taxonomicName class="Lecanoromycetes" family="Lecanoraceae" genus="Rhizoplaca" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Rhizoplaca parilis" order="Lecanorales" pageId="10" pageNumber="11" phylum="Ascomycota" rank="species" species="parilis">Rhizoplaca parilis</taxonomicName>
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,
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<taxonomicName class="Lecanoromycetes" family="Lecanoraceae" genus="Rhizoplaca" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Rhizoplaca porterii" order="Lecanorales" pageId="10" pageNumber="11" phylum="Ascomycota" rank="species" species="porterii">Rhizoplaca porterii</taxonomicName>
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, and the obligatory vagrant species
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<taxonomicName class="Lecanoromycetes" family="Lecanoraceae" genus="Rhizoplaca" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Rhizoplaca haydenii" order="Lecanorales" pageId="10" pageNumber="11" phylum="Ascomycota" rank="species" species="haydenii">Rhizoplaca haydenii</taxonomicName>
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and
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<taxonomicName class="Lecanoromycetes" family="Lecanoraceae" genus="Rhizoplaca" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Rhizoplaca idahoensis" order="Lecanorales" pageId="10" pageNumber="11" phylum="Ascomycota" rank="species" species="idahoensis">Rhizoplaca idahoensis</taxonomicName>
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.
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</paragraph>
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</subSubSection>
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<subSubSection pageId="11" pageNumber="12" type="ecology and distribution">
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<paragraph pageId="11" pageNumber="12">
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<pageBreakToken pageId="11" pageNumber="12" start="start">Ecology</pageBreakToken>
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and distribution.
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</paragraph>
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<paragraph pageId="11" pageNumber="12">This species usually occurs on exposed calcium-poor rock (e.g. basalt, granite, schist), but sometimes on calcium rich sandstone and limestone. Its habitat ranges from pinyon-juniper woodland into montane coniferous forests and lower alpine tundra. This taxon iscurrently known only from the western USA (Idaho and Utah).</paragraph>
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</subSubSection>
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<subSubSection pageId="11" pageNumber="12" type="etymology">
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<paragraph pageId="11" pageNumber="12">Etymology.</paragraph>
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<paragraph pageId="11" pageNumber="12">
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The new taxon is named in honor ofDr. Lyndon D. Porter, whose research on
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<taxonomicName class="Lecanoromycetes" family="Lecanoraceae" genus="Rhizoplaca" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Rhizoplaca melanophthalma" order="Lecanorales" pageId="11" pageNumber="12" phylum="Ascomycota" rank="species" species="melanophthalma">Rhizoplaca melanophthalma</taxonomicName>
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proved invaluable to the present work.
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</paragraph>
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</subSubSection>
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<subSubSection pageId="11" pageNumber="12" type="specimens examined">
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<paragraph pageId="11" pageNumber="12">Specimens examined.</paragraph>
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<paragraph pageId="11" pageNumber="12">See supplementary file 1.</paragraph>
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</subSubSection>
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</treatment>
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</document> |