283 lines
19 KiB
XML
283 lines
19 KiB
XML
<document ID-DOI="http://dx.doi.org/10.3897/mycokeys.95.98969" ID-Pensoft-Pub="1314-4049-95-209" ID-Pensoft-UUID="C5B9D3498B9758A7A53810DC362F99A2" ModsDocID="1314-4049-95-209" checkinTime="1677749816561" checkinUser="pensoft" docAuthor="Zhu, Ya-Quan, Ma, Chun-Yan, Xue, Han, Piao, Chun-Gen, Li, Yong & Jiang, Ning" docDate="2023" docId="1BC54B142E2C59528A5A3DC760DCB39F" docLanguage="en" docName="MycoKeys 95: 209-228" docOrigin="MycoKeys 95" docPubDate="2023-03-01" docSource="http://dx.doi.org/10.3897/mycokeys.95.98969" docTitle="Diaporthe smilacicola Y. Q. Zhu & Ning Jiang 2023, sp. nov." docType="treatment" docVersion="1" id="C5B9D3498B9758A7A53810DC362F99A2" lastPageNumber="209" masterDocId="C5B9D3498B9758A7A53810DC362F99A2" masterDocTitle="Two new species of Diaporthe (Diaporthaceae, Diaporthales) in China" masterLastPageNumber="228" masterPageNumber="209" pageNumber="209" updateTime="1677749816561" updateUser="pensoft">
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<mods:mods xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo>
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<mods:title>Two new species of Diaporthe (Diaporthaceae, Diaporthales) in China</mods:title>
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</mods:titleInfo>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Zhu, Ya-Quan</mods:namePart>
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<mods:affiliation>Key Laboratory of Biodiversity Conservation of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing 100091, China</mods:affiliation>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Ma, Chun-Yan</mods:namePart>
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<mods:affiliation>Natural Resources and Planning Bureau of Rizhao City, Rizhao 276827, China</mods:affiliation>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Xue, Han</mods:namePart>
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<mods:affiliation>Key Laboratory of Biodiversity Conservation of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing 100091, China</mods:affiliation>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Piao, Chun-Gen</mods:namePart>
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<mods:affiliation>Key Laboratory of Biodiversity Conservation of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing 100091, China</mods:affiliation>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Li, Yong</mods:namePart>
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<mods:affiliation>Key Laboratory of Biodiversity Conservation of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing 100091, China</mods:affiliation>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Jiang, Ning</mods:namePart>
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<mods:nameIdentifier type="ORCID">https://orcid.org/0000-0002-9656-8500</mods:nameIdentifier>
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<mods:affiliation>Key Laboratory of Biodiversity Conservation of National Forestry and Grassland Administration, Ecology and Nature Conservation Institute, Chinese Academy of Forestry, Beijing 100091, China</mods:affiliation>
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<mods:nameIdentifier type="email">n.jiang@caf.ac.cn</mods:nameIdentifier>
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</mods:name>
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<mods:typeOfResource>text</mods:typeOfResource>
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<mods:relatedItem type="host">
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<mods:titleInfo>
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<mods:title>MycoKeys</mods:title>
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</mods:titleInfo>
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<mods:part>
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<mods:date>2023</mods:date>
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<mods:detail type="pubDate">
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<mods:number>2023-03-01</mods:number>
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</mods:detail>
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<mods:detail type="volume">
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<mods:number>95</mods:number>
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</mods:detail>
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<mods:extent unit="page">
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<mods:start>209</mods:start>
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<mods:end>228</mods:end>
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</mods:extent>
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</mods:part>
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</mods:relatedItem>
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<mods:location>
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<mods:url>http://dx.doi.org/10.3897/mycokeys.95.98969</mods:url>
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</mods:location>
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<mods:classification>journal article</mods:classification>
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<mods:identifier type="DOI">http://dx.doi.org/10.3897/mycokeys.95.98969</mods:identifier>
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<mods:identifier type="Pensoft-Pub">1314-4049-95-209</mods:identifier>
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<mods:identifier type="Pensoft-UUID">C5B9D3498B9758A7A53810DC362F99A2</mods:identifier>
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</mods:mods>
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<subSection pageId="0" pageNumber="209" type="results">
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<treatment LSID="urn:lsid:plazi:treatment:1BC54B142E2C59528A5A3DC760DCB39F" httpUri="http://treatment.plazi.org/id/1BC54B142E2C59528A5A3DC760DCB39F" lastPageNumber="209" pageId="0" pageNumber="209">
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<subSubSection pageId="0" pageNumber="209" type="nomenclature">
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<paragraph pageId="0" pageNumber="209">
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<taxonomicName LSID="1BC54B14-2E2C-5952-8A5A-3DC760DCB39F" authority="Y. Q. Zhu & Ning Jiang" authorityName="Y. Q. Zhu & Ning Jiang" authorityYear="2023" class="Ascomycetes" family="Diaporthaceae" genus="Diaporthe" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Diaporthe smilacicola" order="Diaporthales" pageId="0" pageNumber="209" phylum="Ascomycota" rank="species" species="smilacicola" status="sp. nov.">Diaporthe smilacicola Y.Q. Zhu & Ning Jiang</taxonomicName>
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<taxonomicNameLabel pageId="0" pageNumber="209">sp. nov.</taxonomicNameLabel>
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</paragraph>
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</subSubSection>
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<subSubSection pageId="0" pageNumber="209" type="description">
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<paragraph pageId="0" pageNumber="209">
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<figureCitation captionStart="Figure 4" captionStartId="F4" captionText="Figure 4. Morphology of Diaporthe smilacicola A colonies on PDA, MEA and SNA at 25 ° C after 2 weeks B leaf spots on the host surface C conidiomata formed on the PDA D, E conidiogenous cells with attached alpha conidia F-G alpha conidia. Scale bars: 200 µm (C); 10 µm (D-G)." figureDoi="10.3897/mycokeys.95.98969.figure4" httpUri="https://binary.pensoft.net/fig/817930" pageId="0" pageNumber="209">Fig. 4</figureCitation>
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</paragraph>
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</subSubSection>
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<subSubSection pageId="0" pageNumber="209" type="etymology">
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<paragraph pageId="0" pageNumber="209">Etymology.</paragraph>
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<paragraph pageId="0" pageNumber="209">
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Named after the host genus,
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<taxonomicName class="Liliopsida" family="Smilacaceae" genus="Smilax" kingdom="Plantae" lsidName="Smilax" order="Liliales" pageId="0" pageNumber="209" phylum="Tracheophyta" rank="genus">
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<emphasis italics="true" pageId="0" pageNumber="209">Smilax</emphasis>
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</taxonomicName>
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.
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</paragraph>
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</subSubSection>
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<subSubSection pageId="0" pageNumber="209" type="description">
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<paragraph pageId="0" pageNumber="209">Description.</paragraph>
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<paragraph pageId="0" pageNumber="209">
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<emphasis bold="true" italics="true" pageId="0" pageNumber="209">Leaf spots</emphasis>
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subcircular to irregular, pale brown to brown, with dark brown margin.
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<emphasis bold="true" italics="true" pageId="0" pageNumber="209">Conidiomata</emphasis>
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pycnidial, scattered, subglobose to globose, black, erumpent, exuding faint yellow translucent conidial droplets from central ostioles, 150-350
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<normalizedToken originalValue="μm">μm</normalizedToken>
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diam.
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<emphasis bold="true" italics="true" pageId="0" pageNumber="209">Conidiogenous cells</emphasis>
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11-16.2
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<normalizedToken originalValue="×">x</normalizedToken>
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1.8-2.4
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<normalizedToken originalValue="μm">μm</normalizedToken>
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, hyaline, phialidic, cylindrical, terminal, slightly tapering towards the apex.
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<emphasis bold="true" italics="true" pageId="0" pageNumber="209">Alpha conidia</emphasis>
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5.7-9.7
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<normalizedToken originalValue="×">x</normalizedToken>
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2.0-3.5
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<normalizedToken originalValue="μm">μm</normalizedToken>
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(mean = 7.8
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<normalizedToken originalValue="×">x</normalizedToken>
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2.6
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<normalizedToken originalValue="μm">μm</normalizedToken>
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, n = 50), hyaline, aseptate, smooth, guttulate, ellipsoidal to oblong ellipsoidal, with both ends obtuse.
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<emphasis bold="true" italics="true" pageId="0" pageNumber="209">Beta conidia and gamma conidia</emphasis>
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not observed.
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<emphasis bold="true" italics="true" pageId="0" pageNumber="209">Sexual morph</emphasis>
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not observed.
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</paragraph>
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<caption doi="10.3897/mycokeys.95.98969.figure4" httpUri="https://binary.pensoft.net/fig/817930" pageId="0" pageNumber="209" start="Figure 4" startId="F4">
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<paragraph pageId="0" pageNumber="209">
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<emphasis bold="true" pageId="0" pageNumber="209">Figure 4.</emphasis>
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Morphology of
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<taxonomicName authorityName="Y. Q. Zhu & Ning Jiang" authorityYear="2023" class="Ascomycetes" family="Diaporthaceae" genus="Diaporthe" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Diaporthe smilacicola" order="Diaporthales" pageId="0" pageNumber="209" phylum="Ascomycota" rank="species" species="smilacicola">
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<emphasis italics="true" pageId="0" pageNumber="209">Diaporthe smilacicola</emphasis>
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</taxonomicName>
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<emphasis bold="true" pageId="0" pageNumber="209">A</emphasis>
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colonies on PDA, MEA and SNA at 25 °C after 2 weeks
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<emphasis bold="true" pageId="0" pageNumber="209">B</emphasis>
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leaf spots on the host surface
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<emphasis bold="true" pageId="0" pageNumber="209">C</emphasis>
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conidiomata formed on the PDA
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<emphasis bold="true" pageId="0" pageNumber="209">D, E</emphasis>
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conidiogenous cells with attached alpha conidia
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<emphasis bold="true" pageId="0" pageNumber="209">F-G</emphasis>
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alpha conidia. Scale bars: 200
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<normalizedToken originalValue="µm">µm</normalizedToken>
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(
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<emphasis bold="true" pageId="0" pageNumber="209">C</emphasis>
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); 10
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<normalizedToken originalValue="µm">µm</normalizedToken>
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(
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<emphasis bold="true" pageId="0" pageNumber="209">D-G</emphasis>
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).
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</paragraph>
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</caption>
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</subSubSection>
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<subSubSection pageId="0" pageNumber="209" type="description">
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<paragraph pageId="0" pageNumber="209">Culture characters.</paragraph>
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<paragraph pageId="0" pageNumber="209">Colonies on PDA flat, with flocculent aerial mycelium and crenate edge, white to gray, reaching a 90 mm diameter after 14 days at 25 °C, forming black conidiomata with black conidial masses; on MEA flat, spreading, with flocculent aerial mycelium forming concentric rings, off-white to luteous, reaching a 90 mm diameter after 14 days at 25 °C; on SNA flat, spreading, with flocculent aerial mycelium forming concentric rings and entire edge, white, reaching a 90 mm diameter after 14 days at 25 °C.</paragraph>
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</subSubSection>
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<subSubSection pageId="0" pageNumber="209" type="materials_examined">
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<paragraph pageId="0" pageNumber="209">Materials examined.</paragraph>
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<paragraph pageId="0" pageNumber="209">
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<materialsCitation collectingDate="2020-11-02" country="China" county="Changsha County" location="Kaihui Town" municipality="Changsha City" specimenCount="1" stateProvince="Hunan Province" typeStatus="holotype">
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<collectingCountry name="China">China</collectingCountry>
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,
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<collectingRegion country="China" name="Hunan">Hunan Province</collectingRegion>
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,
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<collectingMunicipality>Changsha City</collectingMunicipality>
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,
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<collectingCounty>Changsha County</collectingCounty>
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,
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<location LSID="urn:lsid:plazi:treatment:1BC54B142E2C59528A5A3DC760DCB39F:80FDA34D575111FCE30F7C2AD44E33FC" country="China" county="Changsha County" municipality="Changsha City" name="Kaihui Town" stateProvince="Hunan Province">Kaihui Town</location>
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, on leaf spots of
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<taxonomicName class="Liliopsida" family="Smilacaceae" genus="Smilax" kingdom="Plantae" lsidName="Smilax glabra" order="Liliales" pageId="0" pageNumber="209" phylum="Tracheophyta" rank="species" species="glabra">
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<emphasis italics="true" pageId="0" pageNumber="209">Smilax glabra</emphasis>
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</taxonomicName>
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,
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<collectingDate value="2020-11-02">2 November 2020</collectingDate>
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, Ning Jiang (
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<typeStatus>holotype</typeStatus>
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CAF 800070; ex-holotype culture CFCC 54582)
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</materialsCitation>
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.
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<materialsCitation collectingDate="2020-11-02" country="China" location="Shaoshan City" specimenCount="1" stateProvince="Hunan Province" typeStatus="holotype">
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<collectingRegion country="China" name="Hunan">Hunan Province</collectingRegion>
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,
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<location LSID="urn:lsid:plazi:treatment:1BC54B142E2C59528A5A3DC760DCB39F:0C82551F3AA461C18327B3DCFCC9F369" country="China" name="Shaoshan City" stateProvince="Hunan Province">Shaoshan City</location>
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, on leaf spots of
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<taxonomicName class="Liliopsida" family="Smilacaceae" genus="Smilax" kingdom="Plantae" lsidName="Smilax glabra" order="Liliales" pageId="0" pageNumber="209" phylum="Tracheophyta" rank="species" species="glabra">
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<emphasis italics="true" pageId="0" pageNumber="209">Smilax glabra</emphasis>
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</taxonomicName>
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,
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<collectingDate value="2020-11-02">2 November 2020</collectingDate>
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, Ning Jiang (cultures CFCC 58764 and CFCC 58765)
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</materialsCitation>
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.
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</paragraph>
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</subSubSection>
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<subSubSection pageId="0" pageNumber="209" type="notes">
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<paragraph pageId="0" pageNumber="209">Notes.</paragraph>
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<paragraph pageId="0" pageNumber="209">
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Three
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<taxonomicName authorityName="Nitschke & Pyrenomyc.Germ" authorityYear="1870" class="Ascomycetes" family="Diaporthaceae" genus="Diaporthe" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Diaporthe" order="Diaporthales" pageId="0" pageNumber="209" phylum="Ascomycota" rank="genus">
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<emphasis italics="true" pageId="0" pageNumber="209">Diaporthe</emphasis>
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</taxonomicName>
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isolates representing
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<taxonomicName lsidName="D. smilacicola" pageId="0" pageNumber="209" rank="species" species="smilacicola">
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<emphasis italics="true" pageId="0" pageNumber="209">D. smilacicola</emphasis>
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</taxonomicName>
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formed a well-supported clade (ML/BI = 100/1), and appear to be distinct from the other
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<taxonomicName authorityName="Nitschke & Pyrenomyc.Germ" authorityYear="1870" class="Ascomycetes" family="Diaporthaceae" genus="Diaporthe" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Diaporthe" order="Diaporthales" pageId="0" pageNumber="209" phylum="Ascomycota" rank="genus">
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<emphasis italics="true" pageId="0" pageNumber="209">Diaporthe</emphasis>
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</taxonomicName>
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species phylogenetically (Fig.
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<figureCitation captionStart="Figure 2" captionStartId="F2" captionText="Figure 2. Phylogram of Diaporthe arecae species complex resulting from a maximum likelihood analysis based on a combined matrix of ITS, cal, his 3, tef 1 and tub 2 loci. Numbers above the branches indicate ML bootstrap values (left, ML BS ≥ 50 %) and Bayesian posterior probabilities (right, BPP ≥ 0.9). Isolates from the present study are marked in bold blue." figureDoi="10.3897/mycokeys.95.98969.figure2" httpUri="https://binary.pensoft.net/fig/817928" pageId="0" pageNumber="209">2</figureCitation>
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).
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<taxonomicName class="Ascomycetes" family="Diaporthaceae" genus="Diaporthe" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Diaporthe eres" order="Diaporthales" pageId="0" pageNumber="209" phylum="Ascomycota" rank="species" species="eres">
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<emphasis italics="true" pageId="0" pageNumber="209">Diaporthe eres</emphasis>
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</taxonomicName>
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(=
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<taxonomicName lsidName="D. mahothocarpi" pageId="0" pageNumber="209" rank="species" species="mahothocarpi">
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<emphasis italics="true" pageId="0" pageNumber="209">D. mahothocarpi</emphasis>
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</taxonomicName>
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),
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<taxonomicName lsidName="D. lithocarpi" pageId="0" pageNumber="209" rank="species" species="lithocarpi">
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<emphasis italics="true" pageId="0" pageNumber="209">D. lithocarpi</emphasis>
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</taxonomicName>
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and
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<taxonomicName lsidName="D. smilacicola" pageId="0" pageNumber="209" rank="species" species="smilacicola">
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<emphasis italics="true" pageId="0" pageNumber="209">D. smilacicola</emphasis>
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</taxonomicName>
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have been reported from the host
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<taxonomicName lsidName="S. glabra" pageId="0" pageNumber="209" rank="species" species="glabra">
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<emphasis italics="true" pageId="0" pageNumber="209">S. glabra</emphasis>
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</taxonomicName>
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(
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<bibRefCitation DOI="https://doi.org/10.1007/s11557-013-0898-2" author="Gao, YH" journalOrPublisher="Mycological Progress" pageId="0" pageNumber="209" pagination="111 - 121" refId="B17" refString="Gao, YH, Sun, W, Su, YY, Cai, L, 2013. Three new species of Phomopsis in Gutianshan nature reserve in China. Mycological Progress 13 (1): 111 - 121, DOI: https://doi.org/10.1007/s11557-013-0898-2" title="Three new species of Phomopsis in Gutianshan nature reserve in China." url="https://doi.org/10.1007/s11557-013-0898-2" volume="13" year="2013">Gao et al. 2013</bibRefCitation>
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;
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<bibRefCitation DOI="https://doi.org/10.3390/biology10030179" author="Chaisiri, C" journalOrPublisher="Biology (Basel)" pageId="0" pageNumber="209" pagination=": 179" refId="B5" refString="Chaisiri, C, Liu, X, Lin, Y, Fu, Y, Zhu, F, Luo, C, 2021. Phylogenetic and haplotype network analyses of Diaporthe eres species in China based on sequences of multiple loci. Biology (Basel) 10 (3): 179, DOI: https://doi.org/10.3390/biology10030179" title="Phylogenetic and haplotype network analyses of Diaporthe eres species in China based on sequences of multiple loci." url="https://doi.org/10.3390/biology10030179" volume="10" year="2021">Chaisiri et al. 2021</bibRefCitation>
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). Morphologically, these three species are similar in conidial shape and size. However,
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<taxonomicName class="Ascomycetes" family="Diaporthaceae" genus="Diaporthe" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Diaporthe eres" order="Diaporthales" pageId="0" pageNumber="209" phylum="Ascomycota" rank="species" species="eres">
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<emphasis italics="true" pageId="0" pageNumber="209">Diaporthe eres</emphasis>
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</taxonomicName>
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belongs to
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<taxonomicName lsidName="D. eres" pageId="0" pageNumber="209" rank="species" species="eres">
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<emphasis italics="true" pageId="0" pageNumber="209">D. eres</emphasis>
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</taxonomicName>
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species complex, which is different from
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<taxonomicName lsidName="D. lithocarpi" pageId="0" pageNumber="209" rank="species" species="lithocarpi">
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<emphasis italics="true" pageId="0" pageNumber="209">D. lithocarpi</emphasis>
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</taxonomicName>
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and
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<taxonomicName lsidName="D. smilacicola" pageId="0" pageNumber="209" rank="species" species="smilacicola">
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<emphasis italics="true" pageId="0" pageNumber="209">D. smilacicola</emphasis>
|
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</taxonomicName>
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in
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<taxonomicName lsidName="D. arecae" pageId="0" pageNumber="209" rank="species" species="arecae">
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<emphasis italics="true" pageId="0" pageNumber="209">D. arecae</emphasis>
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</taxonomicName>
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species complex.
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<taxonomicName lsidName="D. smilacicola" pageId="0" pageNumber="209" rank="species" species="smilacicola">
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<emphasis italics="true" pageId="0" pageNumber="209">D. smilacicola</emphasis>
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</taxonomicName>
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is obviously different from
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<taxonomicName lsidName="D. lithocarpi" pageId="0" pageNumber="209" rank="species" species="lithocarpi">
|
||
<emphasis italics="true" pageId="0" pageNumber="209">D. lithocarpi</emphasis>
|
||
</taxonomicName>
|
||
based on sequence data (22/467 in ITS, 31/393 in
|
||
<emphasis italics="true" pageId="0" pageNumber="209">cal</emphasis>
|
||
, 52/317 in
|
||
<emphasis italics="true" pageId="0" pageNumber="209">tef1</emphasis>
|
||
, 19/420 in
|
||
<emphasis italics="true" pageId="0" pageNumber="209">tub2</emphasis>
|
||
) (Fig.
|
||
<figureCitation captionStart="Figure 2" captionStartId="F2" captionText="Figure 2. Phylogram of Diaporthe arecae species complex resulting from a maximum likelihood analysis based on a combined matrix of ITS, cal, his 3, tef 1 and tub 2 loci. Numbers above the branches indicate ML bootstrap values (left, ML BS ≥ 50 %) and Bayesian posterior probabilities (right, BPP ≥ 0.9). Isolates from the present study are marked in bold blue." figureDoi="10.3897/mycokeys.95.98969.figure2" httpUri="https://binary.pensoft.net/fig/817928" pageId="0" pageNumber="209">2</figureCitation>
|
||
).
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</subSection>
|
||
</document> |