167 lines
15 KiB
XML
167 lines
15 KiB
XML
<document id="E14041D021697E190BFF447B5081093C" ID-DOI="10.12651/JSR.2023.12" ID-ISSN="2713-8615" IM.bibliography_approvedBy="felipe" IM.illustrations_approvedBy="felipe" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.taxonomicNames_approvedBy="felipe" IM.treatments_approvedBy="felipe" checkinTime="1722389770552" checkinUser="felipe" docAuthor="Hwang, Chi Young, Cho, Eui-Sang, Jung, Dong-Hyun, Lee, Ki-Eun, Cha, In-Tae & Seo, Won-Jae Chi and Myung-Ji" docDate="2023" docId="5C70BA07FF89FF9FFC82FB83D735E014" docLanguage="en" docName="JSpeciesRes.12.spc2.1-6.pdf" docOrigin="Journal of Species Research 12" docSource="http://dx.doi.org/10.5281/zenodo.13139524" docStyle="DocumentStyle:4D398BFF45FF8CA9E08F546BB06AE372.2:JSpeciesRes.2012-.journal_article" docStyleId="4D398BFF45FF8CA9E08F546BB06AE372" docStyleName="JSpeciesRes.2012-.journal_article" docStyleVersion="2" docTitle="Cumulibacter manganitolerans ID 2628" docType="treatment" docVersion="1" lastPageNumber="4" masterDocId="A049C27FFF8BFF9CFFC5FF88D50AE60C" masterDocTitle="A report on five unrecorded bacterial species belonging to the phyla Actinomycetota, Bacillota and Pseudomonadota in Korea isolated in 2020" masterLastPageNumber="6" masterPageNumber="1" pageNumber="3" updateTime="1722389833514" updateUser="GgImagineBatch" zenodo-license-document="CC-BY-4.0">
|
||
<mods:mods id="EF27F59DC3C3C277B913E997140255D0" xmlns:mods="http://www.loc.gov/mods/v3">
|
||
<mods:titleInfo id="D3DB79EA363E32F2B0A001DAD20AECE5">
|
||
<mods:title id="EE2F921FBE788984CB1205D3151D8564">A report on five unrecorded bacterial species belonging to the phyla Actinomycetota, Bacillota and Pseudomonadota in Korea isolated in 2020</mods:title>
|
||
</mods:titleInfo>
|
||
<mods:name id="110C02A8BB94D80DDDE5A44FFBB60948" type="personal">
|
||
<mods:role id="130CD2D454702FA247C2F4648EBC542B">
|
||
<mods:roleTerm id="D7FA67E5EDC0643FD97E0E14054951E5">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="293CDE060083DA90702FCEE6724D4CA3">Hwang, Chi Young</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="82902EFFD36B8AD528C72EE6A6CF0AFE" type="personal">
|
||
<mods:role id="909109DE8C130907F1E6D1F5E9CB17FA">
|
||
<mods:roleTerm id="7EF2B9FF07356FD864D7705084F13004">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="5C6B1F1AE93881213AE748B70BCC5742">Cho, Eui-Sang</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="CAB4833762B32BDF688D0DABB1008ED9" type="personal">
|
||
<mods:role id="E92A0ECC36D8ECD7E411A692F3BC77FD">
|
||
<mods:roleTerm id="E8D2B64FABD52C7561A4ACD06D9174E3">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="00F1C0002F9CD192DB1EC41A8F2F00FA">Jung, Dong-Hyun</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="8B6E6BC8A5ADBE1A8DCDCC87A8D10AF5" type="personal">
|
||
<mods:role id="E8A1DA5784C7CFD53517743AB15E148D">
|
||
<mods:roleTerm id="6A570BF3259F4CCBACC7DD9CDD6EBD0E">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="EE23B29AE5FE57F2D255E6813DCB250F">Lee, Ki-Eun</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="FF4C9E610DF1282E70801BB34B274AE7" type="personal">
|
||
<mods:role id="50EBBE42B6E140D83D018BB57B0018BF">
|
||
<mods:roleTerm id="21080ABC4EBFD84374397ACCB8075E5A">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="9DC932EDB39AEDFA6B1B718BDE7A59EC">Cha, In-Tae</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="B60E901C4E554FB683AF3E7B2B3DC499" type="personal">
|
||
<mods:role id="D6F7B6CD0543F13F4D014A9CE2B3907B">
|
||
<mods:roleTerm id="F840F7D359EC88B83B430FD35297A73E">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="016F470A8739560E517F978AB85601BC">Seo, Won-Jae Chi and Myung-Ji</mods:namePart>
|
||
</mods:name>
|
||
<mods:typeOfResource id="023348A0FFCC597A4A2BA70A83AB6226">text</mods:typeOfResource>
|
||
<mods:relatedItem id="F081B9173E4A026C4860A65EE38DD396" type="host">
|
||
<mods:titleInfo id="9F47FF6873CE8D2FDFA75DC98996D32B">
|
||
<mods:title id="68B57BFB42D3DB2E4C845D121681B004">Journal of Species Research</mods:title>
|
||
</mods:titleInfo>
|
||
<mods:part id="978B12515F4A8EAB0C393F37B06B40AD">
|
||
<mods:date id="F2E57E8F9EB398409E760453D9EC85EB">2023</mods:date>
|
||
<mods:detail id="F05D435CBD5E31921FDB6AB3BF3C33EA" type="volume">
|
||
<mods:number id="F8A55FADE03275FA988E877BD4E4643D">12</mods:number>
|
||
</mods:detail>
|
||
<mods:extent id="DACF8773A4A5671A4E47DE49D1D2E434" unit="page">
|
||
<mods:start id="02ED4D5862BE30942593DEBBC4B6AC77">1</mods:start>
|
||
<mods:end id="48D386E61F48EB672234FDD043000FF1">6</mods:end>
|
||
</mods:extent>
|
||
</mods:part>
|
||
</mods:relatedItem>
|
||
<mods:location id="340337D68E95F6A362DB987675F4196E">
|
||
<mods:url id="622A7C5D7278387288A16BC8189C607A">http://dx.doi.org/10.5281/zenodo.13139524</mods:url>
|
||
</mods:location>
|
||
<mods:classification id="55AA3DB8904F3FB256FBB6D44F9C5772">journal article</mods:classification>
|
||
<mods:identifier id="5216F743764C4B8E7D1C08E1A220B5C2" type="DOI">10.12651/JSR.2023.12</mods:identifier>
|
||
<mods:identifier id="149D75E3494EB3EAE5EF568C416F2AC6" type="ISSN">2713-8615</mods:identifier>
|
||
</mods:mods>
|
||
<treatment id="5C70BA07FF89FF9FFC82FB83D735E014" LSID="urn:lsid:plazi:treatment:5C70BA07FF89FF9FFC82FB83D735E014" httpUri="http://treatment.plazi.org/id/5C70BA07FF89FF9FFC82FB83D735E014" lastPageId="3" lastPageNumber="4" pageId="2" pageNumber="3">
|
||
<subSubSection id="9CC3589AFF89FF9FFC82FB83D052E2BD" lastPageId="3" lastPageNumber="4" pageId="2" pageNumber="3" type="nomenclature">
|
||
<paragraph id="D4660B11FF89FF9EFC82FB83D6A2E248" blockId="2.[839,1351,1035,1092]" pageId="2" pageNumber="3">
|
||
<heading id="8F2EBC7DFF89FF9EFC82FB83D6A2E248" fontSize="10" level="2" pageId="2" pageNumber="3" reason="5">
|
||
<emphasis id="E6ADD703FF89FF9EFC82FB83D6A2E248" bold="true" pageId="2" pageNumber="3">
|
||
Description of
|
||
<taxonomicName id="13D97092FF89FF9EFC2BFB83D696E248" authority="ID 2628" authorityName="ID" authorityYear="2628" class="Actinomycetia" family="Antricoccaceae" genus="Cumulibacter" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Mycobacteriales" pageId="2" pageNumber="3" phylum="Actinobacteriota" rank="species" species="manganitolerans">
|
||
<emphasis id="E6ADD703FF89FF9EFC2BFB83D04DE22F" bold="true" box="[1006,1351,1035,1059]" italics="true" pageId="2" pageNumber="3">Cumulibacter manganitolerans</emphasis>
|
||
ID2628
|
||
</taxonomicName>
|
||
S
|
||
</emphasis>
|
||
</heading>
|
||
</paragraph>
|
||
<paragraph id="D4660B11FF89FF9FFC9BFBD5D052E2BD" blockId="2.[839,1444,1117,1980]" lastBlockId="3.[809,1414,661,1201]" lastPageId="3" lastPageNumber="4" pageId="2" pageNumber="3">
|
||
Cells are Gram-staining-positive, flagellated, and coccus-shaped with 0.6-0.8 × 1.0-1.5 μm in size. Colonies are circular, smooth, entire and yellow colored after three days of incubation at 30℃ on R2A. The strain is positive for
|
||
<emphasis id="E6ADD703FF89FF9EFC0CFB56D6D2E2FA" box="[969,984,1246,1270]" italics="true" pageId="2" pageNumber="3">β</emphasis>
|
||
-glucosidase (esculin hydrolysis) and
|
||
<emphasis id="E6ADD703FF89FF9EFAAFFB56D073E2FA" box="[1386,1401,1246,1270]" italics="true" pageId="2" pageNumber="3">β</emphasis>
|
||
-ga- lactosidase (PNPG); but negative for reduction of nitrates to nitrite, reduction of nitrates to nitrogen, indole production, glucose acidification, arginine dihydrolase, urease, and protease (gelatin hydrolysis). The strain assimilates D- glucose, D- maltose, malate and phenyl-acetate; but does not assimilate L- arabinose, D- mannose, D- mannitol,
|
||
<emphasis id="E6ADD703FF89FF9EFC0EFA48D6D7E3DB" box="[971,989,1472,1495]" italics="true" pageId="2" pageNumber="3">N</emphasis>
|
||
-acetyl-D- glucosamine, gluconate, caprate, adipate, and citrate. The strain utilizes
|
||
<subScript id="485D0954FF89FF9EFB3EFA6ED01AE3F4" attach="right" box="[1275,1296,1504,1528]" fontSize="7" pageId="2" pageNumber="3">D-</subScript>
|
||
glucose, salicin, D- sucrose, D- maltose, acetate, lactate, and glycogen; but does not utilize D- mannitol, D- melibiose, L- fucose,
|
||
<subScript id="485D0954FF89FF9EFC82F9CFD657E055" attach="none" box="[839,861,1601,1625]" fontSize="7" pageId="2" pageNumber="3">D-</subScript>
|
||
sorbitol,
|
||
<subScript id="485D0954FF89FF9EFC03F9CFD6D3E055" attach="right" box="[966,985,1601,1625]" fontSize="7" pageId="2" pageNumber="3">L-</subScript>
|
||
arabinose, propionate, caprate, valerate, citrate,
|
||
<subScript id="485D0954FF89FF9EFC58F9EFD6BAE075" attach="right" box="[925,944,1633,1657]" fontSize="7" pageId="2" pageNumber="3">L-</subScript>
|
||
histidine, 2-ketogluconate, 3-hydroxy-butyr- ate, 4-hydroxy-benzoate, L- proline, L- rhamnose,
|
||
<emphasis id="E6ADD703FF89FF9EFA99F90AD064E095" box="[1372,1390,1666,1689]" italics="true" pageId="2" pageNumber="3">N</emphasis>
|
||
-ace- tyl-D- glucosamine, D- ribose, inositol, itaconate, suberate, malonate,
|
||
<subScript id="485D0954FF89FF9EFC7DF940D6C0E0D6" attach="right" box="[952,970,1730,1754]" fontSize="7" pageId="2" pageNumber="3">L-</subScript>
|
||
alanine, 5-ketogluconate, 3-hydroxy-benzo- ate, and L- serine. The strain produces alkaline phosphatase, esterase (C4), esterase lipase (C8), leucine arylamidase, acid phosphatase, naphtol-AS-BI-phosphohydrolase,
|
||
<emphasis id="E6ADD703FF89FF9EFC45F8CBD685E157" box="[896,911,1859,1883]" italics="true" pageId="2" pageNumber="3">β</emphasis>
|
||
-galactosidase,
|
||
<emphasis id="E6ADD703FF89FF9EFBF0F8CCD14FE157" box="[1077,1093,1860,1883]" italics="true" pageId="2" pageNumber="3">α</emphasis>
|
||
-glucosidase, and
|
||
<emphasis id="E6ADD703FF89FF9EFACDF8CBD01DE157" box="[1288,1303,1859,1883]" italics="true" pageId="2" pageNumber="3">β</emphasis>
|
||
-glucosidase; but does not produce lipase (C14), valine arylamidase, cystine arylamidase, trypsin,
|
||
<emphasis id="E6ADD703FF89FF9EFB58F80CD1A7E197" box="[1181,1197,1924,1947]" italics="true" pageId="2" pageNumber="3">α</emphasis>
|
||
-chymotrypsin,
|
||
<emphasis id="E6ADD703FF89FF9EFAA0F80CD07FE197" box="[1381,1397,1924,1947]" italics="true" pageId="2" pageNumber="3">α</emphasis>
|
||
-ga- lactosidase,
|
||
<emphasis id="E6ADD703FF89FF9EFC14F82CD6EAE1B0" box="[977,992,1956,1980]" italics="true" pageId="2" pageNumber="3">β</emphasis>
|
||
-glucuronidase,
|
||
<emphasis id="E6ADD703FF89FF9EFB50F82CD1ADE1B7" box="[1173,1191,1956,1979]" italics="true" pageId="2" pageNumber="3">N</emphasis>
|
||
-acetyl-
|
||
<emphasis id="E6ADD703FF89FF9EFB39F82CD001E1B0" box="[1276,1291,1956,1980]" italics="true" pageId="2" pageNumber="3">β</emphasis>
|
||
-glucosamini- strain utilizes D- mannitol, D- sorbitol, propionate, valerate, 3-hydroxy-butyrate, inositol, and acetate; but does not utilize D- glucose, salicin, D- melibiose, L- fucose, L- arabi- nose, caprate, citrate,
|
||
<subScript id="485D0954FF88FF9FFBD0FD74D12DE502" attach="right" box="[1045,1063,758,782]" fontSize="7" pageId="3" pageNumber="4">L-</subScript>
|
||
histidine, 2-ketogluconate, 4-hy- droxy-benzoate, L- proline, L- rhamnose,
|
||
<emphasis id="E6ADD703FF88FF9FFB1AFC9FD1FBE522" box="[1247,1265,791,814]" italics="true" pageId="3" pageNumber="4">N</emphasis>
|
||
-acetyl-D- glu- cosamine, D- ribose, D- sucrose, D- maltose, itaconate, suberate, malonate, lactate, L- alanine, 5-ketogluconate, glycogen, 3-hydroxy-benzoate, and L- serine. The strain produces esterase (C4), esterase Lipase (C8), leucine arylamidase, acid phosphatase, naphtol-AS-BI-phosphohydrolase, trypsin (weak); but does not produce alkaline phosphatase, lipase (C14), valine arylamidase, cystine arylamidase,
|
||
<emphasis id="E6ADD703FF88FF9FFC7FFB91D6C0E23C" box="[954,970,1049,1072]" italics="true" pageId="3" pageNumber="4">α</emphasis>
|
||
-chymotrypsin,
|
||
<emphasis id="E6ADD703FF88FF9FFBB0FB91D18FE23C" box="[1141,1157,1049,1072]" italics="true" pageId="3" pageNumber="4">α</emphasis>
|
||
-galactosidase,
|
||
<emphasis id="E6ADD703FF88FF9FFAE8FB90D036E23C" box="[1325,1340,1048,1072]" italics="true" pageId="3" pageNumber="4">β</emphasis>
|
||
-galac- tosidase,
|
||
<emphasis id="E6ADD703FF88FF9FFC48FBB1D696E25D" box="[909,924,1081,1105]" italics="true" pageId="3" pageNumber="4">β</emphasis>
|
||
-glucuronidase,
|
||
<emphasis id="E6ADD703FF88FF9FFB8DFBB1D152E25C" box="[1096,1112,1081,1104]" italics="true" pageId="3" pageNumber="4">α</emphasis>
|
||
-glucosidase,
|
||
<emphasis id="E6ADD703FF88FF9FFB29FBB1D1F1E25D" box="[1260,1275,1081,1105]" italics="true" pageId="3" pageNumber="4">β</emphasis>
|
||
-glucosidase,
|
||
<emphasis id="E6ADD703FF88FF9FFCECFBD1D631E27C" box="[809,827,1113,1136]" italics="true" pageId="3" pageNumber="4">N</emphasis>
|
||
-acetyl-
|
||
<emphasis id="E6ADD703FF88FF9FFC4FFBD1D693E27D" box="[906,921,1113,1137]" italics="true" pageId="3" pageNumber="4">β</emphasis>
|
||
-glucosaminidase,
|
||
<emphasis id="E6ADD703FF88FF9FFB99FBD1D166E27C" box="[1116,1132,1113,1136]" italics="true" pageId="3" pageNumber="4">α</emphasis>
|
||
-mannosidase, and
|
||
<emphasis id="E6ADD703FF88FF9FFAF3FBD1D04CE27C" box="[1334,1350,1113,1136]" italics="true" pageId="3" pageNumber="4">α</emphasis>
|
||
-fuco- sidase. Strain SY1 (iv-2) (= NIBRBAC000506104) was isolated from a paddy soil sample,
|
||
<collectingRegion id="161DC5F3FF88FF9FFB51FB11D1B4E2BD" box="[1172,1214,1177,1201]" country="South Korea" name="Jeju" pageId="3" pageNumber="4">Jeju</collectingRegion>
|
||
Island,
|
||
<collectingCountry id="ACCE4B81FF88FF9FFAD4FB12D05EE2BD" box="[1297,1364,1178,1201]" name="South Korea" pageId="3" pageNumber="4">Korea</collectingCountry>
|
||
.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<caption id="80A65B99FF88FF9FFF55FD96D657E443" pageId="3" pageNumber="4" startId="3.[144,177,542,564]" targetBox="[144,1414,260,509]" targetPageId="3" targetType="figure">
|
||
<paragraph id="D4660B11FF88FF9FFF55FD96D657E443" blockId="3.[144,1414,542,591]" pageId="3" pageNumber="4">
|
||
<emphasis id="E6ADD703FF88FF9FFF55FD96D5C6E43F" bold="true" box="[144,204,542,564]" pageId="3" pageNumber="4">Fig. 1.</emphasis>
|
||
Transmission electron microscopy of cells of the strains isolated in this study. The cells were cultured at their optimal growth conditions. Strains: 1, ID2628S; 2, SY1 (iv-2); 3, CN1234; 4, EM833; 5, SY1 (iii-1).
|
||
</paragraph>
|
||
</caption>
|
||
<caption id="80A65B99FF88FF9FFF55FB70D4D5E375" pageId="3" pageNumber="4" startId="3.[144,177,1272,1294]" targetBox="[151,742,669,1237]" targetPageId="3" targetType="figure">
|
||
<paragraph id="D4660B11FF88FF9FFF55FB70D4D5E375" blockId="3.[144,749,1272,1401]" pageId="3" pageNumber="4">
|
||
<emphasis id="E6ADD703FF88FF9FFF55FB70D5C4E301" bold="true" box="[144,206,1272,1294]" pageId="3" pageNumber="4">Fig. 2.</emphasis>
|
||
A neighbor-joining phylogenetic tree based on 16S rRNA gene sequences shows the relationship between the strains isolat- ed in this study and their relatives. Bootstrap values (>70%) are shown above nodes for the neighbor-joining methods. Bar: 0.02 substitutions per nucleotide position.
|
||
</paragraph>
|
||
</caption>
|
||
<subSubSection id="9CC3589AFF88FF9FFF55FA37D735E014" pageId="3" pageNumber="4" type="description">
|
||
<paragraph id="D4660B11FF88FF9FFF55FA37D735E014" blockId="3.[144,748,1471,1560]" pageId="3" pageNumber="4">
|
||
dase,
|
||
<emphasis id="E6ADD703FF88FF9FFF08FA48D5D7E3DB" box="[205,221,1472,1495]" italics="true" pageId="3" pageNumber="4">α</emphasis>
|
||
-mannosidase, and
|
||
<emphasis id="E6ADD703FF88FF9FFE68FA48D4B7E3DB" box="[429,445,1472,1495]" italics="true" pageId="3" pageNumber="4">α</emphasis>
|
||
-fucosidase. Strain ID2628S (= NIBRBAC000506101) was isolated from the surface of an automobile air conditioner system.
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |