233 lines
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233 lines
20 KiB
XML
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<mods:title id="9845EB6D3DAB227B993A87EDEDE5F1BC">A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae</mods:title>
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<mods:namePart id="C509318112CE592D151555267BB08F10">Zheng, Jinshui</mods:namePart>
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<mods:namePart id="00032183227984CC819348DA6963D54A">Wittouck, Stijn</mods:namePart>
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<mods:namePart id="73A189FB847C4959E080CE312424B4F8">Pot, Bruno</mods:namePart>
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<mods:namePart id="721520F8EBE4516E66343B291F2FC3F4">Walter, Jens</mods:namePart>
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<mods:namePart id="D8B7CEF98BBF1E3576D08DB84858E979">Watanabe, Koichi</mods:namePart>
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<mods:namePart id="E00FDEF71A2B7570867881CD358E4965">Wuyts, Sander</mods:namePart>
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<mods:namePart id="423D480BD08A5BB01CB77CB2A892E304">Gänzle, Michael G.</mods:namePart>
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<mods:namePart id="3554FC22A2ADED7E6217D6865B96EAC7">Lebeer, Sarah</mods:namePart>
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<mods:title id="C42A9A6AEFE34EA392DDB95F437929A3">International Journal of Systematic and Evolutionary Microbiology</mods:title>
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<mods:date id="3D72C69299273971E0ADD2AE187A0A00">2020</mods:date>
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<mods:number id="F9B64AF97BBBAB59D7BC16A53681F215">70</mods:number>
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<treatment id="0389878AFFB92144DA0BFA06FDCB629B" ID-DOI="http://doi.org/10.5281/zenodo.6309987" ID-Zenodo-Dep="6309987" LSID="urn:lsid:plazi:treatment:0389878AFFB92144DA0BFA06FDCB629B" httpUri="http://treatment.plazi.org/id/0389878AFFB92144DA0BFA06FDCB629B" lastPageId="53" lastPageNumber="2835" pageId="52" pageNumber="2834">
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<subSubSection id="C33A6517FFB92145DA0BFA06FB0D67B4" pageId="52" pageNumber="2834" type="nomenclature">
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<paragraph id="8B9F369CFFB92145DA0BFA06FB0D67B4" blockId="52.[826,1468,1424,1956]" pageId="52" pageNumber="2834">
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<heading id="D0D781F0FFB92145DA0BFA06FB0D67B4" allCaps="true" bold="true" fontSize="12" level="2" pageId="52" pageNumber="2834" reason="3">
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<emphasis id="B954EA8EFFB92145DA0BFA06FB0D67B4" bold="true" pageId="52" pageNumber="2834">
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DESCRIPTION OF
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<taxonomicName id="4C204D1FFFB92145DD02FA06FC5A67B4" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="1972" class="Bacilli" family="Lactobacillaceae" genus="Secundilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="52" pageNumber="2834" phylum="Firmicutes" rank="species" species="collinoides" status="comb. nov.">
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<emphasis id="B954EA8EFFB92145DD02FA06FC5A67B4" bold="true" italics="true" pageId="52" pageNumber="2834">SECUNDILACTOBACILLUS COLLINOIDES</emphasis>
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</taxonomicName>
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<taxonomicNameLabel id="A26757F5FFB92145DACAFA20FB0D67B4" box="[1021,1186,1462,1491]" pageId="52" pageNumber="2834" rank="species">COMB. NOV.</taxonomicNameLabel>
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</emphasis>
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</heading>
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</paragraph>
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<subSubSection id="C33A6517FFB92145DA0BFA49FA2F6452" pageId="52" pageNumber="2834" type="etymology">
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<paragraph id="8B9F369CFFB92145DA0BFA49FA2F6452" blockId="52.[826,1468,1424,1956]" pageId="52" pageNumber="2834">
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<taxonomicName id="4C204D1FFFB92145DA0BFA49FB276790" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="1972" box="[828,1160,1503,1527]" class="Bacilli" family="Lactobacillaceae" genus="Secundilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="52" pageNumber="2834" phylum="Firmicutes" rank="species" species="collinoides">
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<emphasis id="B954EA8EFFB92145DA0BFA49FB276790" box="[828,1160,1503,1527]" italics="true" pageId="52" pageNumber="2834">Secundilactobacillus collinoides</emphasis>
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</taxonomicName>
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(col.lin.o.i’des. L. masc. adj.
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<emphasis id="B954EA8EFFB92145DA09FA68FC226471" box="[830,909,1534,1558]" italics="true" pageId="52" pageNumber="2834">collinus</emphasis>
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hilly; Gr. suff.
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<emphasis id="B954EA8EFFB92145DD18FA68FBCD6471" box="[1071,1122,1534,1558]" italics="true" pageId="52" pageNumber="2834">eides</emphasis>
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resembling, similar; N.L. masc. adj.
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<taxonomicName id="4C204D1FFFB92145DA5DF98BFC796452" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="1972" box="[874,982,1565,1589]" class="Bacilli" family="Lactobacillaceae" genus="Secundilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="52" pageNumber="2834" phylum="Firmicutes" rank="species" species="collinoides">
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<emphasis id="B954EA8EFFB92145DA5DF98BFC796452" box="[874,982,1565,1589]" italics="true" pageId="52" pageNumber="2834">collinoides</emphasis>
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</taxonomicName>
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hill-shaped, pertaining to colony form).
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</paragraph>
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</subSubSection>
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<subSubSection id="C33A6517FFB92145DA0BF9DDFA03656C" pageId="52" pageNumber="2834" type="description">
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<paragraph id="8B9F369CFFB92145DA0BF9DDFBE364D9" blockId="52.[826,1468,1424,1956]" pageId="52" pageNumber="2834">
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Basonym:
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<taxonomicName id="4C204D1FFFB92145DA9EF9DDFA246404" authority="Carr and Davies 1972" authorityName="Carr and Davies" authorityYear="1972" box="[937,1419,1611,1635]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="52" pageNumber="2834" phylum="Firmicutes" rank="species" species="collinoides">
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<emphasis id="B954EA8EFFB92145DA9EF9DDFB0D6404" box="[937,1186,1611,1635]" italics="true" pageId="52" pageNumber="2834">Lactobacillus collinoides</emphasis>
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Carr and Davies 1972
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</taxonomicName>
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, 470 (Approved Lists). Prior to the species description, strains of
|
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<taxonomicName id="4C204D1FFFB92145DA0BF91EFC6D64C7" authorityName="Carr and Davies" authorityYear="1972" box="[828,962,1672,1696]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="52" pageNumber="2834" phylum="Firmicutes" rank="species" species="collinoides">
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<emphasis id="B954EA8EFFB92145DA0BF91EFC6D64C7" box="[828,962,1672,1696]" italics="true" pageId="52" pageNumber="2834">S. collinoides</emphasis>
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</taxonomicName>
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were referred to as L.
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<taxonomicName id="4C204D1FFFB92145DD81F91EFA2F64C7" box="[1206,1408,1672,1696]" class="Bacilli" family="Leuconostocaceae" genus="Leuconostoc" kingdom="Bacteria" order="Lactobacillales" pageId="52" pageNumber="2834" phylum="Firmicutes" rank="variety" species="brevis" variety="quinicus">
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<emphasis id="B954EA8EFFB92145DD81F91EFB5C64C7" box="[1206,1267,1672,1696]" italics="true" pageId="52" pageNumber="2834">brevis</emphasis>
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||
var.
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<emphasis id="B954EA8EFFB92145DC1FF91FFA2F64C7" box="[1320,1408,1673,1696]" italics="true" pageId="52" pageNumber="2834">quinicus</emphasis>
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</taxonomicName>
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or
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<taxonomicName id="4C204D1FFFB92145DC91F91FFBE364D9" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="52" pageNumber="2834" phylum="Firmicutes" rank="variety" species="pasteurianus" variety="quinicus">
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<emphasis id="B954EA8EFFB92145DC91F91FFC6D64D9" italics="true" pageId="52" pageNumber="2834">L. pasteurianus</emphasis>
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||
var.
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<emphasis id="B954EA8EFFB92145DAC3F931FBE364D9" box="[1012,1100,1703,1726]" italics="true" pageId="52" pageNumber="2834">quinicus</emphasis>
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</taxonomicName>
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</paragraph>
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<paragraph id="8B9F369CFFB92145DA0BF942FA03656C" blockId="52.[826,1468,1424,1956]" pageId="52" pageNumber="2834">
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Characteristics as described [
|
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<bibRefCitation id="EFB14B6DFFB92145DD5FF943FB3B648A" author="Carr JG & Davies PA" box="[1128,1172,1749,1773]" pageId="52" pageNumber="2834" pagination="463 - 471" refId="ref72098" refString="279. Carr JG, Davies PA. The ecology and classification of strains of Lactobacillus collinoides nov. spec.: a bacterium commonly Found in fermenting apple juice. J Appl Bacteriol 1972; 35: 463 - 471." type="journal article" year="1972">279</bibRefCitation>
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]; the genome size of the
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<typeStatus id="549B883EFFB92145DCBAF943FA15648A" box="[1421,1466,1749,1773]" pageId="52" pageNumber="2834">type</typeStatus>
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strain is 3.62 Mbp. The mol% G+C content of DNA is 46.1.
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</paragraph>
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</subSubSection>
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<subSubSection id="C33A6517FFB92145DA0BF8B7FBBB65C4" pageId="52" pageNumber="2834" type="materials_examined">
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<paragraph id="8B9F369CFFB92145DA0BF8B7FA13653F" blockId="52.[826,1468,1424,1956]" pageId="52" pageNumber="2834">Isolated from compost, as spoilage organisms in apple cider, table olives, dairy products, fermented durian fruit, and wines.</paragraph>
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<paragraph id="8B9F369CFFB92145DA0BF8FBFBBB65C4" blockId="52.[826,1468,1424,1956]" pageId="52" pageNumber="2834">
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||
The
|
||
<typeStatus id="549B883EFFB92145DA5DF8F8FC3765E1" box="[874,920,1902,1926]" pageId="52" pageNumber="2834">type</typeStatus>
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strain is Cl3
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=
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<specimenCode id="DB869EE7FFB92145DD77F8FBFB6365E2" box="[1088,1228,1901,1925]" collectionCode="ATCC" country="USA" httpUri="http://grbio.org/cool/b0k1-wg01" name="American Type Culture Collection" pageId="52" pageNumber="2834">ATCC 27612</specimenCode>
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=
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<collectionCode id="ED31AE59FFB92145DDC5F8FBFA8565E2" box="[1266,1322,1901,1925]" country="Germany" httpUri="http://grbio.org/cool/4644-42cg" name="Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH" pageId="52" pageNumber="2834">DSM</collectionCode>
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20515
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</superScript>
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=
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<specimenCode id="DB869EE7FFB92145DCB0F8FBFCC065C3" collectionCode="JCM" country="Japan" httpUri="http://grbio.org/cool/iyky-md37" name="Japan Collection of Microorganisms" pageId="52" pageNumber="2834">JCM 1123</specimenCode>
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<superScript id="7C559BD4FFB92145DA58F81DFCD665FE" attach="left" box="[879,889,1931,1945]" fontSize="6" pageId="52" pageNumber="2834">
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=
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<specimenCode id="DB869EE7FFB92145DAA3F81AFBA965C3" box="[916,1030,1932,1956]" collectionCode="LMG" country="Belgium" httpUri="http://grbio.org/cool/0fkg-rcci" name="Belgian Coordinated Collections of Microorganisms/ LMG Bacteria Collection" pageId="52" pageNumber="2834">LMG 9194</specimenCode>
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</superScript>
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</materialsCitation>
|
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.
|
||
</paragraph>
|
||
</subSubSection>
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||
<subSubSection id="C33A6517FFB82144D94EFF21FD1162A8" box="[121,702,183,207]" pageId="53" pageNumber="2835" type="description">
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<paragraph id="8B9F369CFFB82144D94EFF21FD1162A8" blockId="53.[121,702,183,253]" box="[121,702,183,207]" pageId="53" pageNumber="2835">Genome sequence accession number: AYYR00000000.</paragraph>
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||
</subSubSection>
|
||
<subSubSection id="C33A6517FFB82144D94EFF73FDCB629B" box="[121,612,228,253]" pageId="53" pageNumber="2835" type="materials_examined">
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<paragraph id="8B9F369CFFB82144D94EFF73FDCB629B" blockId="53.[121,702,183,253]" box="[121,612,228,253]" pageId="53" pageNumber="2835">
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<materialsCitation id="3B483CC1FFB82144D94EFF73FDCF629B" accessionNumber="AB005893" box="[121,608,228,253]" pageId="53" pageNumber="2835" specimenCount="1">
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||
16S rRNA gene accession number:
|
||
<accessionNumber id="9473AB7FFFB82144D8D9FF72FDCF629B" box="[494,608,228,252]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/AB005893" pageId="53" pageNumber="2835">AB005893</accessionNumber>
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</materialsCitation>
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.
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||
</paragraph>
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</subSubSection>
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</treatment>
|
||
</document> |