218 lines
21 KiB
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218 lines
21 KiB
XML
<document id="4894BFAF6B71DC90960AD2DC5FDCE943" ID-DOI="10.11646/phytotaxa.345.3.2" ID-ISSN="1179-3163" ID-Zenodo-Dep="13708429" IM.bibliography_approvedBy="felipe" IM.illustrations_approvedBy="felipe" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="GgImagineBatch" IM.taxonomicNames_approvedBy="felipe" IM.treatmentCitations_approvedBy="felipe" IM.treatments_approvedBy="felipe" checkinTime="1725592851508" checkinUser="felipe" docAuthor="Parra, Luis A., Angelini, Claudio, Ortiz-Santana, Beatriz, Mata, Gerardo, Billette, Christophe, Rojo, Carlos, Chen, Jie & Callac, Philippe" docDate="2018" docId="03B9FE3AA310FFFCF1F4F8FEFAB7FC2D" docLanguage="en" docName="phytotaxa.345.3.2.pdf" docOrigin="Phytotaxa 345 (3)" docSource="http://dx.doi.org/10.11646/phytotaxa.345.3.2" docStyle="DocumentStyle:96748F8F1B6C902996E134952A3A36B9.13:Phytotaxa.2014-.journal_article" docStyleId="96748F8F1B6C902996E134952A3A36B9" docStyleName="Phytotaxa.2014-.journal_article" docStyleVersion="13" docTitle="Agaricus (sect. Kerrigania) , L. A. Parra, Angelini, B. Ortiz, Linda J. Chen & Callac 2018, sect. nov." docType="treatment" docVersion="2" lastPageNumber="247" masterDocId="FF808642A30BFFE0F17CFFE8FFC8FF80" masterDocTitle="The genus Agaricus in the Caribbean. Nine new taxa mostly based on collections from the Dominican Republic" masterLastPageNumber="271" masterPageNumber="219" pageNumber="246" updateTime="1725604170861" updateUser="ExternalLinkService" zenodo-license-figures="UNSPECIFIED" zenodo-license-treatments="UNSPECIFIED">
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<mods:titleInfo id="29D0B3A5993CDC474B4581699CA07491">
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<mods:title id="C96F2F25090D79A7669062CFCEE233F2">The genus Agaricus in the Caribbean. Nine new taxa mostly based on collections from the Dominican Republic</mods:title>
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<mods:namePart id="892BBAC5AAB9848E7E9337A2AA2169D7">Parra, Luis A.</mods:namePart>
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<mods:affiliation id="8424C102A64D9E3F21583E22840D50D8">Avda. Padre Claret 7, 5 º G, 09400 Aranda de Duero, Burgos, Spain.</mods:affiliation>
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<mods:namePart id="9D281528D6AFD16A940976B47297C531">Angelini, Claudio</mods:namePart>
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<mods:affiliation id="6EAC6C03B875A4A9E9A206CA35F3FC8A">Jardín Botánico Nacional Dr. Rafael Ma. Moscoso, Apartado 21 - 9, Santo Domingo, Dominican Republic. & Via Cappuccini 78 / 8, 33170 Pordenone, Italia.</mods:affiliation>
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<mods:namePart id="4172785F5FE6A94581DBBC20A308E6FF">Ortiz-Santana, Beatriz</mods:namePart>
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<mods:affiliation id="7DC83AF708E3AF57443F7C1E0417DA69">US Forest Service, Northern Research Station, Center for Forest Mycology Research, One Gifford Pinchot Drive, Madison, Wisconsin 53726, USA.</mods:affiliation>
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<mods:namePart id="37A6FC514759BDE386FD6E1B9B282A5B">Mata, Gerardo</mods:namePart>
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<mods:affiliation id="5F1D69A229D8FCC10DC0E1FE1377490B">Instituto de Ecología, A. C., Apartado Postal 63, 91000 Xalapa, Veracruz, Mexico.</mods:affiliation>
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<mods:namePart id="BBE457F9C04D001E42A155F8D319AAC6">Billette, Christophe</mods:namePart>
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<mods:affiliation id="F4BCF78A7DF996681ADDB14233E353C1">INRA, MycSA, CS 20032, 33882 Villenave d’Ornon CEDEX, France</mods:affiliation>
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<mods:namePart id="AD6D70E5F539EA8DF7A33E37A73C86D1">Rojo, Carlos</mods:namePart>
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<mods:affiliation id="918F4F0826C34F3FECBD99CE81B46732">Biotecnología Forestal Aplicada (IdForest), Calle Curtidores 17, 34004 Palencia, Palencia, Spain.</mods:affiliation>
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<mods:namePart id="4DE7B52132A561E54E1ED2CB87E12AC5">Chen, Jie</mods:namePart>
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<mods:affiliation id="F281184CAA580A8D1891593230DBF259">AV 7 1715, Córdoba Centro, 94500 Córdoba, Veracruz, Mexico.</mods:affiliation>
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<mods:namePart id="882AA841C56E5D5577A5A7AD06E99587">Callac, Philippe</mods:namePart>
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<mods:affiliation id="6677298A214CDFC29C58161772A32C4C">INRA, MycSA, CS 20032, 33882 Villenave d’Ornon CEDEX, France</mods:affiliation>
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<mods:typeOfResource id="4F5728B54D8CADFD15AC56A24D2CBC24">text</mods:typeOfResource>
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<mods:title id="45A985B1FA0FC42554DE16CC21923943">Phytotaxa</mods:title>
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<mods:part id="B57CE683A56312BF1C9C25DC93A88EAD">
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<mods:date id="FAC6E8361905B4D7B08355D1C3C4913F">2018</mods:date>
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<mods:number id="D65E8C9D11D9E757094C8817E43A1DDF">2018-03-27</mods:number>
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<mods:number id="1DB94B158A65039EF18E5F1E03CF33AC">345</mods:number>
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<mods:number id="F4C3DD052B0DB423AD2CAE18D7C7B979">3</mods:number>
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<mods:url id="CE74C90D9AA822F3A6508CE9FC5E259E">http://dx.doi.org/10.11646/phytotaxa.345.3.2</mods:url>
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<mods:classification id="236BAFD5C45BBFF80D339370E4439CCC">journal article</mods:classification>
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<mods:identifier id="B66EAA1DD7E35D890E3D9AFDA40A2478" type="DOI">10.11646/phytotaxa.345.3.2</mods:identifier>
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<mods:identifier id="44423EEE6F94FADD73EF852EABDC1FEF" type="ISSN">1179-3163</mods:identifier>
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<mods:identifier id="4449A7AD97B909D097D8E94271764099" type="Zenodo-Dep">13708429</mods:identifier>
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<treatment id="03B9FE3AA310FFFCF1F4F8FEFAB7FC2D" LSID="urn:lsid:plazi:treatment:03B9FE3AA310FFFCF1F4F8FEFAB7FC2D" httpUri="http://treatment.plazi.org/id/03B9FE3AA310FFFCF1F4F8FEFAB7FC2D" lastPageId="28" lastPageNumber="247" pageId="27" pageNumber="246">
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<subSubSection id="C30A1CA7A310FFFBF1F4F8FEFEB3F8F7" pageId="27" pageNumber="246" type="nomenclature">
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<paragraph id="8BAF4F2CA310FFFBF1F4F8FEFB5CF8B1" blockId="27.[136,1172,1814,1841]" box="[136,1172,1814,1841]" pageId="27" pageNumber="246">
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<heading id="D0E7F840A310FFFBF1F4F8FEFB5CF8B1" box="[136,1172,1814,1841]" fontSize="11" level="2" pageId="27" pageNumber="246" reason="3">
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<taxonomicName id="4C1034AFA310FFFBF1F4F8FEFBE9F8B1" authority="L.A. Parra, Angelini, B. Ortiz, Linda J. Chen & Callac" authorityName=", L. A. Parra, Angelini, B. Ortiz, Linda J. Chen & Callac" authorityYear="2018" box="[136,1057,1814,1841]" class="Agaricomycetes" family="Agaricaceae" genus="Agaricus" kingdom="Fungi" order="Agaricales" pageId="27" pageNumber="246" phylum="Basidiomycota" rank="section" section="Kerrigania" status="sect. nov.">
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<emphasis id="B964933EA310FFFBF1F4F8FEFF38F8B0" bold="true" box="[136,240,1814,1840]" italics="true" pageId="27" pageNumber="246">Agaricus</emphasis>
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sect.
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||
<emphasis id="B964933EA310FFFBF04DF8FEFE67F8B0" bold="true" box="[305,431,1814,1840]" italics="true" pageId="27" pageNumber="246">Kerrigania</emphasis>
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, L.A. Parra, Angelini, B. Ortiz, Linda J. Chen & Callac
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</taxonomicName>
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,
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<emphasis id="B964933EA310FFFBF551F8F0FB5CF8B1" box="[1069,1172,1816,1841]" italics="true" pageId="27" pageNumber="246">
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||
<taxonomicNameLabel id="A2572E45A310FFFBF551F8F0FB5CF8B1" box="[1069,1172,1816,1841]" pageId="27" pageNumber="246" rank="section">sect. nov.</taxonomicNameLabel>
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</emphasis>
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||
</heading>
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||
</paragraph>
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||
<paragraph id="8BAF4F2CA310FFFBF1F4F88AFEB3F8F7" blockId="27.[136,724,1890,1947]" box="[136,379,1890,1911]" pageId="27" pageNumber="246">
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||
<emphasis id="B964933EA310FFFBF1F4F88AFEC8F8F7" bold="true" box="[136,256,1890,1911]" pageId="27" pageNumber="246">MycoBank:</emphasis>
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||
MB823278.
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||
</paragraph>
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||
</subSubSection>
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||
<subSubSection id="C30A1CA7A310FFFBF1F4F86EFD1CF81B" box="[136,724,1926,1947]" pageId="27" pageNumber="246" type="materials_examined">
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||
<paragraph id="8BAF4F2CA310FFFBF1F4F86EFD1CF81B" blockId="27.[136,724,1890,1947]" box="[136,724,1926,1947]" pageId="27" pageNumber="246">
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||
<emphasis id="B964933EA310FFFBF1F4F86EFF0DF81B" bold="true" box="[136,197,1926,1947]" pageId="27" pageNumber="246">
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||
<typeStatus id="54ABF18EA310FFFBF1F4F86EFF77F81B" box="[136,191,1926,1947]" pageId="27" pageNumber="246">Type</typeStatus>
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||
:
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</emphasis>
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||
<taxonomicName id="4C1034AFA310FFFBF1B4F86EFD1CF81B" authority="L. A. Parra, Angelini & B. Ortiz" authorityName="L. A. Parra, Angelini & B. Ortiz" box="[200,724,1926,1947]" class="Agaricomycetes" family="Agaricaceae" genus="Agaricus" kingdom="Fungi" order="Agaricales" pageId="27" pageNumber="246" phylum="Basidiomycota" rank="species" species="porphyropos">
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||
<emphasis id="B964933EA310FFFBF1B4F86EFE57F81B" box="[200,415,1926,1947]" italics="true" pageId="27" pageNumber="246">Agaricus porphyropos</emphasis>
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L.A. Parra, Angelini & B. Ortiz
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</taxonomicName>
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||
</paragraph>
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||
</subSubSection>
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||
<subSubSection id="C30A1CA7A310FFFCF1F4F824FAB7FC2D" lastPageId="28" lastPageNumber="247" pageId="27" pageNumber="246" type="etymology">
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||
<paragraph id="8BAF4F2CA310FFFBF1F4F824FDCDF789" blockId="27.[136,1451,1996,2057]" pageId="27" pageNumber="246">
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||
<emphasis id="B964933EA310FFFBF1F4F824FEDBF865" bold="true" box="[136,275,1996,2021]" pageId="27" pageNumber="246">Etymology:</emphasis>
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This specific epithet honours our good friend and mycologist Richard Kerrigan for his contribution to the knowledge of the genus
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<taxonomicName id="4C1034AFA310FFFBF0E4F818FDC9F789" box="[408,513,2032,2057]" class="Agaricomycetes" family="Agaricaceae" genus="Agaricus" kingdom="Fungi" order="Agaricales" pageId="27" pageNumber="246" phylum="Basidiomycota" rank="genus">Agaricus</taxonomicName>
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.
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</paragraph>
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||
<paragraph id="8BAF4F2CA317FFFCF1C1FF48FD93FE11" blockId="28.[136,1452,160,941]" pageId="28" pageNumber="247">
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||
<emphasis id="B964933EA317FFFCF1C1FF48FCDFFF39" bold="true" box="[189,791,160,185]" pageId="28" pageNumber="247">Original description, Morphological description:</emphasis>
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Schäffer’s and KOH reactions not performed on fresh collections. Schäffer’s reaction positive dark reddish purple or reddish brown and KOH reaction yellow when observable on the pileus surface of dried collections. Odor of anise or of almonds when rubbed or cut (see note below). Annulus superous, thick at the margin, two layered (double), fibrillose-squamose sometimes with the scales radially arranged as a cogwheel near the margin in its lower surface. Cheilocystidia generally simple or with one or two septa at the base, usually clavate, pyriform, more or less globose or fusiform, sometimes rostrate or absent in some collections. Spores lacking a rudimentary apical pore.
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</paragraph>
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<paragraph id="8BAF4F2CA317FFFCF1C1FE74FBBFFE7D" blockId="28.[136,1452,160,941]" pageId="28" pageNumber="247">
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<emphasis id="B964933EA317FFFCF1C1FE74FF37FE35" bold="true" box="[189,255,412,437]" pageId="28" pageNumber="247">Note:</emphasis>
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For some collections belonging to this section other odors have been recorded but none of them was collected by one of the authors of this paper. These odors such as iodate in the collection F1779, light in LAPAM66 or like
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<taxonomicName id="4C1034AFA317FFFCF1C5FE0CFE99FE7D" box="[185,337,484,509]" class="Agaricomycetes" family="Agaricaceae" genus="Agaricus" kingdom="Fungi" order="Agaricales" pageId="28" pageNumber="247" phylum="Basidiomycota" rank="species" species="campestris">
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<emphasis id="B964933EA317FFFCF1C5FE0CFE99FE7D" box="[185,337,484,509]" italics="true" pageId="28" pageNumber="247">A. campestris</emphasis>
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</taxonomicName>
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L.: Fr. in CJL090302.05 are pointed out in field notes by the collectors.
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</paragraph>
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<paragraph id="8BAF4F2CA317FFFCF1C1FDE0FCA5FD0D" blockId="28.[136,1452,160,941]" pageId="28" pageNumber="247">
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||
<emphasis id="B964933EA317FFFCF1C1FDE0FDAFFDA1" bold="true" box="[189,615,520,545]" pageId="28" pageNumber="247">Stem age and phylogenetic support:</emphasis>
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in the MCC tree of
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<bibRefCitation id="EF8132DDA317FFFCF239FDE0FBC7FDA1" author="Chen, J. & Callac, P. & Parra, L. A. & Karunarathna, S. C. & He, M. - Q. & Moinard, M. & De Kesel, A. & Raspe, O. & Wisitrassameewong, K. & Hyde, K. D. & Zhao, R. - L." box="[837,1039,520,545]" pageId="28" pageNumber="247" pagination="170 - 196" refId="ref28096" refString="Chen, J., Callac, P., Parra, L. A., Karunarathna, S. C., He, M. - Q., Moinard, M., De Kesel, A., Raspe, O., Wisitrassameewong, K., Hyde, K. D. & Zhao, R. - L., (2017) Study in Agaricus subgenus Minores and allied clades reveals a new American subgenus and contrasting phylogenetic patterns in Europe and Greater Mekong Subregion. Persoonia 38: 170 - 196. https: // doi. org / 10.3767 / 003158517 X 695521" type="journal article" year="2017">
|
||
Chen
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||
<emphasis id="B964933EA317FFFCF2FAFDE0FC76FDA1" box="[902,958,520,545]" italics="true" pageId="28" pageNumber="247">et al.</emphasis>
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||
(2017)
|
||
</bibRefCitation>
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the well-supported (PP ≥ 0.99) clade corresponding to
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<emphasis id="B964933EA317FFFCF030FDC4FEADFDC5" box="[332,357,556,581]" italics="true" pageId="28" pageNumber="247">A.</emphasis>
|
||
sect.
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||
<emphasis id="B964933EA317FFFCF0DAFDC4FDEAFDC5" box="[422,546,556,581]" italics="true" pageId="28" pageNumber="247">Kerrigania</emphasis>
|
||
is sister to
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<emphasis id="B964933EA317FFFCF3DEFDC4FD73FDC5" box="[674,699,556,581]" italics="true" pageId="28" pageNumber="247">A.</emphasis>
|
||
sect.
|
||
<emphasis id="B964933EA317FFFCF380FDC4FC4BFDC5" box="[764,899,556,581]" italics="true" pageId="28" pageNumber="247">Minoriopsis</emphasis>
|
||
(also proposed in this paper as new section), and consequently has the same stem age of 22.83 Ma. In our ITS tree (
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<figureCitation id="132B53A9A317FFFCF2F1FDB8FC19FDE9" box="[909,977,592,617]" captionStart="FIGURE 1" captionStartId="7.[136,229,1885,1906]" captionTargetBox="[157,1436,434,1847]" captionTargetId="figure-93@7.[151,1437,425,1860]" captionTargetPageId="7" captionText="FIGURE 1. Maximum likelihood phylogram of Agaricus subg. Minores, A. subg. Minoriopsis, and A. subg. Flavoagaricus resulting from analysis of ITS sequence data. The best scoring RAxML ITS tree is rooted with A. campestris. The bootstrap support values greater than 50% are indicated, and branches with Bayesian posterior probabilities greater than 0.8 are in bold. Species sampled from the Dominican Republic are in red; new taxa are in bold. T = Type specimen." figureDoi="http://doi.org/10.5281/zenodo.13708431" httpUri="https://zenodo.org/record/13708431/files/figure.png" pageId="28" pageNumber="247">Fig. 1</figureCitation>
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), it is also well supported (ML bootstrap support 94 %; PP = 1) and includes ten named or putative species.
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</paragraph>
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<paragraph id="8BAF4F2CA317FFFCF1C1FD70FAB7FC2D" blockId="28.[136,1452,160,941]" pageId="28" pageNumber="247">
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||
<emphasis id="B964933EA317FFFCF1C1FD70FDE3FD31" bold="true" box="[189,555,664,689]" pageId="28" pageNumber="247">Section-specific ITS markers:</emphasis>
|
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Ten differences between the sequences of
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<emphasis id="B964933EA317FFFCF54EFD70FB82FD31" box="[1074,1098,664,689]" italics="true" pageId="28" pageNumber="247">A.</emphasis>
|
||
sect.
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||
<emphasis id="B964933EA317FFFCF5EAFD70FADAFD31" box="[1174,1298,664,689]" italics="true" pageId="28" pageNumber="247">Kerrigania</emphasis>
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||
and
|
||
<emphasis id="B964933EA317FFFCF428FD70FAA4FD31" box="[1364,1388,664,689]" italics="true" pageId="28" pageNumber="247">A.</emphasis>
|
||
sect.
|
||
<emphasis id="B964933EA317FFFCF1F4FD54FEC7FD55" box="[136,271,700,725]" italics="true" pageId="28" pageNumber="247">Minoriopsis</emphasis>
|
||
are indicated above under the description of
|
||
<emphasis id="B964933EA317FFFCF26DFD54FCE1FD55" box="[785,809,700,725]" italics="true" pageId="28" pageNumber="247">A.</emphasis>
|
||
sect.
|
||
<emphasis id="B964933EA317FFFCF217FD54FC3AFD55" box="[875,1010,700,725]" italics="true" pageId="28" pageNumber="247">Minoriopsis</emphasis>
|
||
. Only the difference at position 118 of the alignment merits to be described in detail. Based on the sequence of
|
||
<taxonomicName id="4C1034AFA317FFFCF2CAFD08FBABFD79" box="[950,1123,736,761]" class="Agaricomycetes" family="Agaricaceae" genus="Agaricus" kingdom="Fungi" order="Agaricales" pageId="28" pageNumber="247" phylum="Basidiomycota" rank="species" species="porphyropos">
|
||
<emphasis id="B964933EA317FFFCF2CAFD08FBABFD79" box="[950,1123,736,761]" italics="true" pageId="28" pageNumber="247">A. porphyropos</emphasis>
|
||
</taxonomicName>
|
||
, the DNA segment including this marker is [ggttgTYggaaa@112–113]. It is relatively well conserved except at the 3’ end of the flanking sequence where ‘aaa’ is highly variable (‘tat’ in most species of
|
||
<emphasis id="B964933EA317FFFCF38BFCC0FCD8FCC1" box="[759,784,808,833]" italics="true" pageId="28" pageNumber="247">A.</emphasis>
|
||
sect.
|
||
<taxonomicName id="4C1034AFA317FFFCF22FFCC0FC67FCC1" box="[851,943,808,833]" pageId="28" pageNumber="269" rank="section" section="Minores">
|
||
<emphasis id="B964933EA317FFFCF22FFCC0FC67FCC1" box="[851,943,808,833]" italics="true" pageId="28" pageNumber="247">Minores</emphasis>
|
||
</taxonomicName>
|
||
). In this segment TY is, in fact, an insertion of two nucleotides (TC or TT), which, in both subgenera (
|
||
<taxonomicName id="4C1034AFA317FFFCF25FFCA4FCB7FCE5" box="[803,895,844,869]" pageId="28" pageNumber="269" rank="section" section="Minores">
|
||
<emphasis id="B964933EA317FFFCF25FFCA4FCB7FCE5" box="[803,895,844,869]" italics="true" pageId="28" pageNumber="247">Minores</emphasis>
|
||
</taxonomicName>
|
||
and
|
||
<emphasis id="B964933EA317FFFCF2C5FCA4FBFDFCE5" box="[953,1077,844,869]" italics="true" pageId="28" pageNumber="247">Minoriopsi</emphasis>
|
||
s), is found exclusively in all the sequences of
|
||
<emphasis id="B964933EA317FFFCF063FC98FEF8FC09" box="[287,304,880,905]" italics="true" pageId="28" pageNumber="247">A</emphasis>
|
||
. sect.
|
||
<emphasis id="B964933EA317FFFCF005FC98FE3DFC09" box="[377,501,880,905]" italics="true" pageId="28" pageNumber="247">Kerrigania</emphasis>
|
||
. It can be noted that an insertion of a single nucleotide (T or C) is found only in two species,
|
||
<taxonomicName id="4C1034AFA317FFFCF19BFC7CFE13FC2D" authorityName="L. A. Parra, Angelini & Callac" authorityYear="2018" box="[231,475,916,941]" class="Agaricomycetes" family="Agaricaceae" genus="Agaricus" kingdom="Fungi" order="Agaricales" pageId="28" pageNumber="247" phylum="Basidiomycota" rank="species" species="argenteopurpureus">
|
||
<emphasis id="B964933EA317FFFCF19BFC7CFE13FC2D" box="[231,475,916,941]" italics="true" pageId="28" pageNumber="247">A. argenteopurpureus</emphasis>
|
||
</taxonomicName>
|
||
within
|
||
<emphasis id="B964933EA317FFFCF34CFC7CFD81FC2D" box="[560,585,916,941]" italics="true" pageId="28" pageNumber="247">A.</emphasis>
|
||
sect.
|
||
<emphasis id="B964933EA317FFFCF3F5FC7CFCD8FC2D" box="[649,784,916,941]" italics="true" pageId="28" pageNumber="247">Minoriopsis</emphasis>
|
||
, and
|
||
<taxonomicName id="4C1034AFA317FFFCF232FC7CFBE6FC2D" box="[846,1070,916,941]" class="Agaricomycetes" family="Agaricaceae" genus="Agaricus" kingdom="Fungi" order="Agaricales" pageId="28" pageNumber="247" phylum="Basidiomycota" rank="species" species="candidolutescens">
|
||
<emphasis id="B964933EA317FFFCF232FC7CFBE6FC2D" box="[846,1070,916,941]" italics="true" pageId="28" pageNumber="247">A. candidolutescens</emphasis>
|
||
</taxonomicName>
|
||
within
|
||
<emphasis id="B964933EA317FFFCF5FFFC7CFB54FC2D" box="[1155,1180,916,941]" italics="true" pageId="28" pageNumber="247">A.</emphasis>
|
||
sect.
|
||
<emphasis id="B964933EA317FFFCF5A0FC7CFAB0FC2D" box="[1244,1400,916,941]" italics="true" pageId="28" pageNumber="247">Pantropicales</emphasis>
|
||
.
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |