150 lines
12 KiB
XML
150 lines
12 KiB
XML
<document ID-DOI="https://doi.org/10.3767/persoonia.2019.43.02" ID-GBIF-Dataset="7e041cd7-75f6-4285-a8b0-d4aa85967ca0" ID-PMC="PMC7085855" ID-PubMed="32214497" ID-Zenodo-Dep="3565708" checkinTime="1575644186748" checkinUser="plazi" docAuthor="Maryani, N., Sandoval-Denis, M., Lombard, L., Crous, P. W. & Kema, G. H. J." docDate="2019" docId="0391CB210B52866EFF95FD95092093E4" docLanguage="en" docName="persoonia_fusarium_on_banana_1552560214027.pdf" docOrigin="Persoonia 43" docStyle="DocumentStyle{}" docTitle="Fusarium incarnatum-equiseti" docType="treatment" docVersion="5" lastPageNumber="58" masterDocId="FFA8B3590B588664FFE4FFCA0D379126" masterDocTitle="New endemic Fusarium species hitch-hiking with pathogenic Fusarium strains causing Panama disease in small-holder banana plots in Indonesia" masterLastPageNumber="69" masterPageNumber="48" pageNumber="58" updateTime="1668138949826" updateUser="ExternalLinkService">
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<mods:mods xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo>
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<mods:title>New endemic Fusarium species hitch-hiking with pathogenic Fusarium strains causing Panama disease in small-holder banana plots in Indonesia</mods:title>
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</mods:titleInfo>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Maryani, N.</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Sandoval-Denis, M.</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Lombard, L.</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Crous, P. W.</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Kema, G. H. J.</mods:namePart>
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</mods:name>
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<mods:typeOfResource>text</mods:typeOfResource>
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<mods:relatedItem type="host">
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<mods:titleInfo>
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<mods:title>Persoonia</mods:title>
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</mods:titleInfo>
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<mods:part>
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<mods:date>2019</mods:date>
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<mods:detail type="pubDate">
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<mods:number>2019-03-14</mods:number>
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</mods:detail>
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<mods:detail type="volume">
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<mods:number>43</mods:number>
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</mods:detail>
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<mods:extent unit="page">
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<mods:start>48</mods:start>
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<mods:end>69</mods:end>
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</mods:extent>
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</mods:part>
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</mods:relatedItem>
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<mods:classification>journal article</mods:classification>
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<mods:identifier type="DOI">https://doi.org/10.3767/persoonia.2019.43.02</mods:identifier>
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<mods:identifier type="GBIF-Dataset">7e041cd7-75f6-4285-a8b0-d4aa85967ca0</mods:identifier>
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<mods:identifier type="PMC">PMC7085855</mods:identifier>
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<mods:identifier type="PubMed">32214497</mods:identifier>
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<mods:identifier type="Zenodo-Dep">3565708</mods:identifier>
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</mods:mods>
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<treatment ID-DOI="http://doi.org/10.5281/zenodo.5613543" ID-GBIF-Taxon="160671858" ID-Zenodo-Dep="5613543" LSID="urn:lsid:plazi:treatment:0391CB210B52866EFF95FD95092093E4" httpUri="http://treatment.plazi.org/id/0391CB210B52866EFF95FD95092093E4" lastPageNumber="58" pageId="10" pageNumber="58">
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<subSubSection pageId="10" pageNumber="58" type="nomenclature">
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<paragraph blockId="10.[113,765,606,984]" pageId="10" pageNumber="58">
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<heading bold="true" centered="true" fontSize="9" level="3" pageId="10" pageNumber="58" reason="0">
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<emphasis bold="true" italics="true" pageId="10" pageNumber="58">
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<taxonomicName box="[113,461,607,630]" class="Sordariomycetes" family="Nectriaceae" genus="Fusarium" kingdom="Fungi" order="Hypocreales" pageId="10" pageNumber="58" phylum="Ascomycota" rank="species" species="incarnatum-equiseti">
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<taxonomicName box="[113,221,607,630]" class="Dothideomycetes" family="Botryosphaeriaceae" genus="Fusarium" higherTaxonomySource="CoL" kingdom="Fungi" order="Botryosphaeriales" pageId="10" pageNumber="58" phylum="Ascomycota" rank="genus">Fusarium</taxonomicName>
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incarnatum-equiseti
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</taxonomicName>
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species complex (FIESC) phylogeny
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</emphasis>
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection pageId="10" pageNumber="58" type="discussion">
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<paragraph blockId="10.[113,765,606,984]" lastBlockId="10.[824,1475,175,706]" pageId="10" pageNumber="58">
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The 11 isolates belonging to the FIESC were assessed using a more inclusive analysis based on five loci (
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<emphasis box="[541,601,701,724]" italics="true" pageId="10" pageNumber="58">cmdA</emphasis>
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, ITS, LSU,
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<emphasis box="[716,764,701,724]" italics="true" pageId="10" pageNumber="58">rpb2</emphasis>
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and
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<emphasis box="[159,199,730,753]" italics="true" pageId="10" pageNumber="58">tef1</emphasis>
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;
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<figureCitation box="[211,271,730,753]" captionStart="Fig" captionStartId="8.[111,143,1988,2006]" captionTargetBox="[341,1223,175,1974]" captionTargetId="graphics@8.[341,1060,175,1935]" captionTargetPageId="8" captionText="Fig. 3 Maximum likelihood tree inferred from the combined cmdA, ITS, rpb2, tef1, and LSU sequence datasets of the Fusarium incarnatum-equiseti species complex (FIESC) including 11 Indonesian isolates (indicated in blue). Bootstrap support values and Bayesian posterior probabilities are given at each node. The tree is rooted to Fusarium circinatum (NRRL 25331) and Fusarium fujikuroi (NRRL 13566)." figureDoi="http://doi.org/10.5281/zenodo.3565714" httpUri="https://zenodo.org/record/3565714/files/figure.png" pageId="10" pageNumber="58">Fig. 3</figureCitation>
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). The alignment consisted of a total 2 746 char- acters (
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<emphasis box="[193,253,759,782]" italics="true" pageId="10" pageNumber="58">cmdA</emphasis>
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653, ITS 510, LSU 562,
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<emphasis box="[515,563,759,782]" italics="true" pageId="10" pageNumber="58">rpb2</emphasis>
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597 and
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<emphasis box="[662,702,759,782]" italics="true" pageId="10" pageNumber="58">tef1</emphasis>
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424), from 93 isolates, including all the phylogenetic clades known in this species complex plus two outgroup taxa (
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<taxonomicName class="Sordariomycetes" family="Nectriaceae" genus="Fusarium" kingdom="Fungi" order="Hypocreales" pageId="10" pageNumber="58" phylum="Ascomycota" rank="species" species="circinatum">
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<emphasis italics="true" pageId="10" pageNumber="58">
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<taxonomicName box="[582,681,817,840]" class="Dothideomycetes" family="Botryosphaeriaceae" genus="Fusarium" higherTaxonomySource="CoL" kingdom="Fungi" order="Botryosphaeriales" pageId="10" pageNumber="58" phylum="Ascomycota" rank="genus">Fusarium</taxonomicName>
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circinatum
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</emphasis>
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</taxonomicName>
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NRRL 25331 and
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<taxonomicName box="[341,445,845,868]" class="Sordariomycetes" family="Nectriaceae" genus="Fusarium" kingdom="Fungi" order="Hypocreales" pageId="10" pageNumber="58" phylum="Ascomycota" rank="species" species="fujikuroi">
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<emphasis box="[341,445,845,868]" italics="true" pageId="10" pageNumber="58">
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<collectionCodeEnum box="[341,356,845,868]" pageId="10" pageNumber="58">F</collectionCodeEnum>
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. fujikuroi
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</emphasis>
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</taxonomicName>
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NRRL 13566). Multi-gene phy- logenetic inference was able to recognise six new phylogenetic species in the FIESC. The number of new phylogenetic species recognised is equally distributed in the incarnatum clade and the
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<taxonomicName box="[113,196,961,984]" pageId="10" pageNumber="58" rank="species" species="equiseti">equiseti</taxonomicName>
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clade (three new phylospecies each) sensu
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<bibRefCitation author="O'Donnell K & Sutton DA & Rinaldi MG" box="[658,960,176,983]" journalOrPublisher="Journal Clinical Microbiology" pageId="10" pageNumber="58" pagination="3851 - 3861" part="47" refId="ref17013" refString="O'Donnell K, Sutton DA, Rinaldi MG, et al. 2009. Novel multilocus sequence typing scheme reveals high genetic diversity of human pathogenic members of the Fusarium incarnatum-F. equiseti and F. chlamydosporum species complexes within the United States. Journal Clinical Microbiology 47: 3851 - 3861." title="Novel multilocus sequence typing scheme reveals high genetic diversity of human pathogenic members of the Fusarium incarnatum-F. equiseti and F. chlamydosporum species complexes within the United States" type="journal article" year="2009">O’Donnell et al. (2009)</bibRefCitation>
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. In the
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<emphasis box="[1044,1163,175,198]" italics="true" pageId="10" pageNumber="58">incarnatum</emphasis>
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clade, isolates InaCC
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<collectionCodeEnum box="[1413,1427,176,199]" pageId="10" pageNumber="58">
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<collectionCode box="[1413,1427,176,199]" country="USA" lsid="urn:lsid:biocol.org:col:15707" name="Field Museum of Natural History, Botany Department" pageId="10" pageNumber="58" type="Herbarium">F</collectionCode>
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</collectionCodeEnum>
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940, InaCC
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<collectionCodeEnum box="[903,918,205,228]" pageId="10" pageNumber="58">
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<collectionCode box="[903,918,205,228]" country="USA" lsid="urn:lsid:biocol.org:col:15707" name="Field Museum of Natural History, Botany Department" pageId="10" pageNumber="58" type="Herbarium">F</collectionCode>
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</collectionCodeEnum>
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941, Indo167, InaCC
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<collectionCodeEnum box="[1159,1173,205,228]" pageId="10" pageNumber="58">
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<collectionCode box="[1159,1173,205,228]" country="USA" lsid="urn:lsid:biocol.org:col:15707" name="Field Museum of Natural History, Botany Department" pageId="10" pageNumber="58" type="Herbarium">F</collectionCode>
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</collectionCodeEnum>
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964, Indo186, and Indo188 clustered in a distinct clade (55 bp/0.99 pp) closely related to the phylogenetic species FIESC-16 which is introduced here as phylogenetic species FIESC-32. These isolates were obtained from five different banana
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<taxonomicName box="[1106,1241,325,348]" pageId="10" pageNumber="58" rank="variety" variety="hosts">variety hosts</taxonomicName>
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in
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<collectingRegion box="[1275,1371,324,347]" country="Indonesia" name="Sulawesi Utara" pageId="10" pageNumber="58">Sulawesi</collectingRegion>
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and
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<collectingRegion country="Indonesia" name="Kalimantan Utara" pageId="10" pageNumber="58">Kalimantan</collectingRegion>
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. The other two new species in the
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<emphasis box="[1256,1373,355,378]" italics="true" pageId="10" pageNumber="58">incarnatum</emphasis>
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clade are monotypic lineages represented by isolate Indo161 (99 bp/1 pp) closely related to FIESC-26 and isolate InaCC
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<collectionCodeEnum box="[1341,1354,414,437]" pageId="10" pageNumber="58">
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<collectionCode box="[1341,1354,414,437]" country="USA" lsid="urn:lsid:biocol.org:col:15707" name="Field Museum of Natural History, Botany Department" pageId="10" pageNumber="58" type="Herbarium">F</collectionCode>
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</collectionCodeEnum>
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965 (50 bp/ 1 pp) closely related to FIESC-24, introduced as phylogenetic species FIESC-33 and FIESC-34, respectively. In the
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<taxonomicName authorityName="Saccardo" authorityYear="1886" baseAuthorityName="Corda" box="[1391,1474,474,497]" class="Sordariomycetes" family="Nectriaceae" genus="Fusarium" kingdom="Fungi" order="Hypocreales" pageId="10" pageNumber="58" phylum="Ascomycota" rank="species" species="equiseti">
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<emphasis box="[1391,1474,474,497]" italics="true" pageId="10" pageNumber="58">equiseti</emphasis>
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</taxonomicName>
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clade, three isolates: Indo174 (99 bp/1 pp) closely related to FIESC-1; Indo175 (-/1 pp) and InaCC
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<collectionCodeEnum box="[1269,1282,534,557]" pageId="10" pageNumber="58">
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<collectionCode box="[1269,1282,534,557]" country="USA" lsid="urn:lsid:biocol.org:col:15707" name="Field Museum of Natural History, Botany Department" pageId="10" pageNumber="58" type="Herbarium">F</collectionCode>
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</collectionCodeEnum>
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963 (55 bp/1 pp), both isolates closely related to FIESC-13, formed monotypic lineages which are introduced here as FIESC-29, FIESC-30, and FIESC-31, respectively. These phylogenetic species were isolated from two banana varieties in relatively close proximity in
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<collectingRegion box="[849,1043,683,706]" country="Indonesia" name="Kalimantan Selatan" pageId="10" pageNumber="58">South Kalimantan</collectingRegion>
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.
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |