121 lines
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121 lines
12 KiB
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<document id="1E6293CF7B845E5AAE661BF690D633F8" ID-DOI="10.1016/j.phytochem.2021.112820" ID-ISSN="1873-3700" ID-Zenodo-Dep="8259418" IM.bibliography_approvedBy="jonas" IM.illustrations_approvedBy="felipe" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.taxonomicNames_approvedBy="jonas" IM.treatments_approvedBy="jonas" checkinTime="1692308930053" checkinUser="felipe" docAuthor="Toljamo, Anna, Koistinen, Ville, Hanhineva, Kati, K, Sirpa, arenlampi & Kokko, Harri" docDate="2021" docId="039F8798BE29FFBCFCEDFCB8FE6AFF0C" docLanguage="en" docName="Phytochemistry.189.112820.pdf" docOrigin="Phytochemistry (112820) 189" docSource="http://dx.doi.org/10.1016/j.phytochem.2021.112820" docStyle="DocumentStyle:F36D69FC8B198FBE91029DF9C24697D3.5:Phytochemistry.2020-.journal_article" docStyleId="F36D69FC8B198FBE91029DF9C24697D3" docStyleName="Phytochemistry.2020-.journal_article" docStyleVersion="5" docTitle="Phytophthora cactorum J. Schrot" docType="treatment" docVersion="3" lastPageNumber="2" masterDocId="FFA6FFE0BE28FFBEFFDFFFA2FF92FFF7" masterDocTitle="Terpenoid and lipid profiles vary in different Phytophthora cactorum - strawberry interactions" masterLastPageNumber="8" masterPageNumber="1" pageNumber="2" updateTime="1692632875845" updateUser="jonas">
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<mods:title id="200B33CEF76D26B0245CD5CA7B0ED64C">Terpenoid and lipid profiles vary in different Phytophthora cactorum - strawberry interactions</mods:title>
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<mods:namePart id="26E68F103F9BE525770DA8B400612C59">Toljamo, Anna</mods:namePart>
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<mods:affiliation id="2A0E033F672665DC064AFA3ED03E1AC3">* & Faculty of Science and Forestry, Department of Environmental and Biological Sciences, University of Eastern Finland, P. O. Box 1627, FI- 70211, Kuopio, Finland</mods:affiliation>
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<mods:namePart id="CB6F049C2CC34217FA9AB2C380F43421">Koistinen, Ville</mods:namePart>
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<mods:namePart id="94A72E7ABC865BCDB12048CB0F2ED4EF">Hanhineva, Kati</mods:namePart>
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<mods:namePart id="967C87408653B281BD5D62CF86B844E8">K, Sirpa</mods:namePart>
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<mods:namePart id="F5F6D5166A4BC150B1851254EE2479C4">arenlampi</mods:namePart>
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<mods:affiliation id="35D49C7DC5E5E81DCA8C350A2A8C15CC">* & Faculty of Science and Forestry, Department of Environmental and Biological Sciences, University of Eastern Finland, P. O. Box 1627, FI- 70211, Kuopio, Finland</mods:affiliation>
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<mods:namePart id="C70D965E8D974549D232513C5A5E885A">Kokko, Harri</mods:namePart>
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<mods:title id="062CBDB9AB48B2A560F1D014264842B7">Phytochemistry</mods:title>
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<mods:date id="D8F0E337265D98336632BEC58E9A2F68">2021</mods:date>
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<mods:title id="2FA9DE4BDB4330E6DC5ECF82F958E568">112820</mods:title>
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<mods:number id="B93C42C10F163B95DA9E0F8FDF96D423">2021-09-30</mods:number>
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<mods:identifier id="1C89E8E3DCF84B3C3C168A568E2CF10F" type="DOI">10.1016/j.phytochem.2021.112820</mods:identifier>
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<mods:identifier id="9382EB50862C0042AC95EE49E1F83FAD" type="ISSN">1873-3700</mods:identifier>
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<treatment id="039F8798BE29FFBCFCEDFCB8FE6AFF0C" LSID="urn:lsid:plazi:treatment:039F8798BE29FFBCFCEDFCB8FE6AFF0C" httpUri="http://treatment.plazi.org/id/039F8798BE29FFBCFCEDFCB8FE6AFF0C" lastPageId="2" lastPageNumber="2" pageId="1" pageNumber="2">
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<subSubSection id="C32C6505BE29FFBFFCEDFCB8FA2BFCDB" box="[818,1465,793,813]" pageId="1" pageNumber="2" type="nomenclature">
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<paragraph id="8B89368EBE29FFBFFCEDFCB8FA2BFCDB" blockId="1.[818,1465,793,813]" box="[818,1465,793,813]" pageId="1" pageNumber="2">
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<heading id="D0C181E2BE29FFBFFCEDFCB8FA2BFCDB" bold="true" box="[818,1465,793,813]" fontSize="36" level="1" pageId="1" pageNumber="2" reason="1">
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<emphasis id="B942EA9CBE29FFBFFCEDFCB8FA2BFCDB" bold="true" box="[818,1465,793,813]" italics="true" pageId="1" pageNumber="2">
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2.1. Overview of metabolic changes caused by
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<taxonomicName id="4C364D0DBE29FFBFFB04FCB8FAD4FCDA" ID-CoL="4HNQN" ID-ENA="1283836" authority="(Lebert & Cohn) J. Schrot" authorityName="J. Schrot" baseAuthorityName="Lebert & Cohn" box="[1243,1350,794,813]" class="Peronosporea" family="Peronosporaceae" genus="Phytophthora" kingdom="Chromista" order="Peronosporales" pageId="1" pageNumber="2" phylum="Oomycota" rank="species" species="cactorum">P. cactorum</taxonomicName>
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inoculations
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</emphasis>
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<subSubSection id="C32C6505BE29FFBCFC8EFCF0FE6AFF0C" lastPageId="2" lastPageNumber="3" pageId="1" pageNumber="2" type="biology_ecology">
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<paragraph id="8B89368EBE29FFBCFC8EFCF0FE6AFF0C" blockId="1.[818,1488,849,1204]" lastBlockId="2.[100,770,148,251]" lastPageId="2" lastPageNumber="3" pageId="1" pageNumber="2">
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The metabolite analysis revealed 3952 molecular features from the crown samples. Based on the overall metabolite profiles of the samples, also illustrated by principal component analysis (
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<figureCitation id="130D2A0BBE29FFBFFB27FC2BFAB9FC6A" box="[1272,1323,905,925]" captionStart="Fig" captionStartId="1.[818,848,1888,1905]" captionTargetBox="[831,1481,1250,1857]" captionTargetId="figure-1108@1.[823,1484,1244,1860]" captionTargetPageId="1" captionText="Fig. 1. Principal component analysis of the metabolite profiles of the analysed samples. The two components explaining the largest proportion of the variance (28.2% for component 1 and 13.7% for component 2) in the data are shown. QC = quality control samples pooled from the experimental samples." figureDoi="http://doi.org/10.5281/zenodo.8259420" httpUri="https://zenodo.org/record/8259420/files/figure.png" pageId="1" pageNumber="2">Fig. 1</figureCitation>
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),
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<taxonomicName id="4C364D0DBE29FFBFFAE1FC2BFA5DFC6B" box="[1342,1487,905,924]" pageId="1" pageNumber="2">
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<emphasis id="B942EA9CBE29FFBFFAE1FC2BFA1BFC6B" bold="true" box="[1342,1417,905,924]" italics="true" pageId="1" pageNumber="2">Fragaria</emphasis>
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species
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</taxonomicName>
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is the predominant factor influencing the metabolite profiles. In
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<taxonomicName id="4C364D0DBE29FFBFFA7AFC07FC17FC23" class="Magnoliopsida" family="Rosaceae" genus="Fragaria" isHybrid="true" kingdom="Plantae" order="Rosales" pageId="1" pageNumber="2" phylum="Tracheophyta" rank="species" species="ananassa">
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<emphasis id="B942EA9CBE29FFBFFA7AFC07FA25FC4F" bold="true" box="[1445,1463,933,952]" italics="true" pageId="1" pageNumber="2">F.</emphasis>
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×
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<emphasis id="B942EA9CBE29FFBFFCEDFC63FC17FC23" bold="true" box="[818,901,961,980]" italics="true" pageId="1" pageNumber="2">ananassa</emphasis>
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</taxonomicName>
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(cv. Senga Sengana), inoculation with the
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<taxonomicName id="4C364D0DBE29FFBFFAC0FC63FA18FC23" box="[1311,1418,961,980]" class="Peronosporea" family="Peronosporaceae" genus="Phytophthora" kingdom="Chromista" order="Peronosporales" pageId="1" pageNumber="2" phylum="Oomycota" rank="species" species="cactorum">
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<emphasis id="B942EA9CBE29FFBFFAC0FC63FA18FC23" bold="true" box="[1311,1418,961,980]" italics="true" pageId="1" pageNumber="2">P. cactorum</emphasis>
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</taxonomicName>
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isolate Pc407 (Pc407-Fa) caused a clear separation in PC2 (squares), whereas the Pc440-inoculated samples (Pc440-Fa) clustered near to the controls (C-Fa). In
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<taxonomicName id="4C364D0DBE29FFBFFC48FBB7FC4DFBDF" box="[919,991,1045,1064]" class="Magnoliopsida" family="Rosaceae" genus="Fragaria" kingdom="Plantae" order="Rosales" pageId="1" pageNumber="2" phylum="Tracheophyta" rank="species" species="vesca">
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<emphasis id="B942EA9CBE29FFBFFC48FBB7FC4DFBDF" bold="true" box="[919,991,1045,1064]" italics="true" pageId="1" pageNumber="2">F. vesca</emphasis>
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</taxonomicName>
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(accession
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<collectingRegion id="49F2F86CBE29FFBFFB8EFBB7FB05FBDF" box="[1105,1175,1045,1064]" country="United States of America" name="Hawaii" pageId="1" pageNumber="2">Hawaii</collectingRegion>
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4, clone H4.4), both
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<taxonomicName id="4C364D0DBE29FFBFFABDFBB7FA5DFBDF" box="[1378,1487,1045,1064]" class="Peronosporea" family="Peronosporaceae" genus="Phytophthora" kingdom="Chromista" order="Peronosporales" pageId="1" pageNumber="2" phylum="Oomycota" rank="species" species="cactorum">
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<emphasis id="B942EA9CBE29FFBFFABDFBB7FA5DFBDF" bold="true" box="[1378,1487,1045,1064]" italics="true" pageId="1" pageNumber="2">P. cactorum</emphasis>
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</taxonomicName>
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isolates influenced the metabolite profiles (balls), although the differences were less pronounced than in the Pc407-Fa interaction. The biological replicates of C-Fv, Pc440-Fv, and Pc407-Fa, were tightly clustered within each of these groups, whereas clustering of Pc440-Fa, C-Fa, and Pc407-Fv samples was more loose in the PCA plot (
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<figureCitation id="130D2A0BBE29FFBFFA55FB02FA53FB44" box="[1418,1473,1184,1203]" captionStart="Fig" captionStartId="1.[818,848,1888,1905]" captionTargetBox="[831,1481,1250,1857]" captionTargetId="figure-1108@1.[823,1484,1244,1860]" captionTargetPageId="1" captionText="Fig. 1. Principal component analysis of the metabolite profiles of the analysed samples. The two components explaining the largest proportion of the variance (28.2% for component 1 and 13.7% for component 2) in the data are shown. QC = quality control samples pooled from the experimental samples." figureDoi="http://doi.org/10.5281/zenodo.8259420" httpUri="https://zenodo.org/record/8259420/files/figure.png" pageId="1" pageNumber="2">Fig. 1</figureCitation>
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). This could be attributed to the size variation of the crown samples. The diameters of the crowns were not recorded, but biomass differences between the biological replicates were considerable, particularly among the Pc440-Fa and C-Fa samples (Table S1).
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</paragraph>
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</subSubSection>
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</treatment>
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