198 lines
18 KiB
XML
198 lines
18 KiB
XML
<document ID-DOI="http://dx.doi.org/10.3897/mycokeys.65.47704" ID-GBIF-Dataset="00685a01-0785-47ec-aa0b-77c991ee4b08" ID-PMC="PMC7078340" ID-Pensoft-Pub="1314-4049-65-49" ID-Pensoft-UUID="DED2BF86E6FD56179642F7119604CEB9" ID-PubMed="32206025" ModsDocID="1314-4049-65-49" checkinTime="1583860301782" checkinUser="pensoft" docAuthor="Hou, Lingwei, Hernandez-Restrepo, Margarita, Groenewald, Johannes Zacharias, Cai, Lei & Crous, Pedro W." docDate="2020" docId="F0D67FCCEBBF581B9BAD8232E67A1D62" docLanguage="en" docName="MycoKeys 65: 49-99" docOrigin="MycoKeys 65" docSource="http://dx.doi.org/10.3897/mycokeys.65.47704" docTitle="Vandijckomycella joseae Hern. - Restr., L. W. Hou, L. Cai & Crous 2020, sp. nov." docType="treatment" docVersion="5" id="DED2BF86E6FD56179642F7119604CEB9" lastPageNumber="49" masterDocId="DED2BF86E6FD56179642F7119604CEB9" masterDocTitle="Citizen science project reveals high diversity in Didymellaceae (Pleosporales, Dothideomycetes)" masterLastPageNumber="99" masterPageNumber="49" pageNumber="49" updateTime="1732488328564" updateUser="ExternalLinkService">
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<mods:titleInfo id="2445F17CEDFE660C07923417C7E406C4">
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<mods:title id="2FCD6AB81C6696DC0740912A613CA4A5">Citizen science project reveals high diversity in Didymellaceae (Pleosporales, Dothideomycetes)</mods:title>
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<mods:name id="E65213E1C894482D15B0DB02550E74A7" type="personal">
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<mods:roleTerm id="EF24931100C678F29B266BC1BD084840">Author</mods:roleTerm>
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<mods:namePart id="1F1394CF7DE1F5E4286B0EF2CD4165E5">Hou, Lingwei</mods:namePart>
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<mods:roleTerm id="112BF400CE7CAC8F93EF4E8A9471CFD1">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="E194F502C36BE27DF73B6C12222632DB">Hernandez-Restrepo, Margarita</mods:namePart>
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</mods:name>
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<mods:name id="6AC741BD84736186612C094183952D7F" type="personal">
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<mods:roleTerm id="721AE69C915E7F95BD34B3966511E0D7">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="7183509AC58A7C216C8B0000F09FBC9D">Groenewald, Johannes Zacharias</mods:namePart>
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<mods:name id="926BC722F2719DEDE6CBBD537305A99D" type="personal">
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</mods:role>
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<mods:namePart id="9B3EB452771BCFF507753D9350356657">Cai, Lei</mods:namePart>
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</mods:name>
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<mods:name id="BF979AE706FE68FE3840A9BD363465CF" type="personal">
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<mods:namePart id="C51EDDA5237D2E8004DC7F532C05F3A8">Crous, Pedro W.</mods:namePart>
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<mods:typeOfResource id="A6EEA3DD6DF8717817F69427CF11F439">text</mods:typeOfResource>
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<mods:title id="67365E8964BD30A349CCC939B0427ACB">MycoKeys</mods:title>
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<mods:part id="3FCB5DDB7086EAC21BF8BEFEED3395EB">
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<mods:date id="DABB19981FD5AA6E8B86B49507B0015B">2020</mods:date>
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<mods:detail id="38C46DF3BA3133E97C75764891D0841D" type="volume">
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<mods:number id="D62CE09C91165E572E737CE02B60F8B5">65</mods:number>
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<mods:start id="7FA63FD66FC79D45319B91AA6F0051F3">49</mods:start>
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<mods:end id="461FD6CF5BD699CC79E5FF384EED0476">99</mods:end>
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<mods:url id="93E6BDCCBAD1DA96608B42D71E9B0F9C">http://dx.doi.org/10.3897/mycokeys.65.47704</mods:url>
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<mods:classification id="81CF273EE0B016BD2163D733FCB7F294">journal article</mods:classification>
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<mods:identifier id="81A1745D937FEA390E676BE0D08C4F5C" type="DOI">http://dx.doi.org/10.3897/mycokeys.65.47704</mods:identifier>
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<mods:identifier id="65B4E0C45844002DD2723E37086E0742" type="Pensoft-Pub">1314-4049-65-49</mods:identifier>
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<mods:identifier id="AEECD1BEE95A6CF388E0AD9164E08254" type="Pensoft-UUID">DED2BF86E6FD56179642F7119604CEB9</mods:identifier>
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<treatment id="F0D67FCCEBBF581B9BAD8232E67A1D62" ID-GBIF-Taxon="162481722" LSID="urn:lsid:plazi:treatment:F0D67FCCEBBF581B9BAD8232E67A1D62" httpUri="http://treatment.plazi.org/id/F0D67FCCEBBF581B9BAD8232E67A1D62" lastPageNumber="49" pageId="0" pageNumber="49" scope_class="Dothideomycetes" scope_family="Didymellaceae" scope_order="Pleosporales">
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<subSubSection id="514516B365ABAEE2A47E1F456041720B" pageId="0" pageNumber="49" type="nomenclature">
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<paragraph id="8853F66D58489B03B481B1BB6347B25C" pageId="0" pageNumber="49">
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<taxonomicName id="B6F0FB0B83EBD52E1C5EDF0E1CE59D9B" ID-CoL="9ZH57" LSID="F0D67FCC-EBBF-581B-9BAD-8232E67A1D62" authority="Hern. - Restr., L. W. Hou, L. Cai & Crous" authorityName="Hern. - Restr., L. W. Hou, L. Cai & Crous" authorityYear="2020" class="Dothideomycetes" family="Didymellaceae" genus="Vandijckomycella" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Vandijckomycella joseae" order="Pleosporales" pageId="0" pageNumber="49" phylum="Ascomycota" rank="species" species="joseae" status="sp. nov.">Vandijckomycella joseae Hern.-Restr., L. W. Hou, L. Cai & Crous</taxonomicName>
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<taxonomicNameLabel id="073FAA1EABBB3809E33F03DB5B48F014" pageId="0" pageNumber="49">sp. nov.</taxonomicNameLabel>
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<figureCitation id="CA336B36636E2FBCFC9F83EA9E6A7AB6" captionStart="Figure 11" captionStartId="F11" captionText="Figure 11. Vandijckomycella joseae (CBS 143011). A, B Colony on OA (front and reverse) C, D colony on MEA (front and reverse) E, F colony on PDA (front and reverse) G, H pycnidia forming on OA I, J section of pycnidial wall K-N conidiogenous cells O conidia. Scale bars: 100 μm (H); 20 μm (I); 10 μm (J); 5 μm (K-O)." figureDoi="10.3897/mycokeys.65.47704.figure11" httpUri="https://binary.pensoft.net/fig/388214" pageId="0" pageNumber="49">Figure 11</figureCitation>
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</paragraph>
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</subSubSection>
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<subSubSection id="8B6E0B5ABC2EB5A2F4A6F18885FB432A" pageId="0" pageNumber="49" type="etymology">
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<paragraph id="2317EF9528ACA40547A759216E9DE6A7" pageId="0" pageNumber="49">Etymology.</paragraph>
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<paragraph id="B7A57CD4223C316E8DE933CF32037C44" pageId="0" pageNumber="49">
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Named in honour of the first female President (2015-2018) of the Royal Dutch Academy of Arts and Sciences (KNAW),
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<normalizedToken id="3E997B8DB7444DBF79559AD494A32CA5" originalValue="José">Jose</normalizedToken>
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F.T.M. van Dijck, who collected the soil sample from which the ex-type strain was isolated.
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</paragraph>
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</subSubSection>
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<subSubSection id="3D484876A0E007C967946ED3CA4F0DD2" pageId="0" pageNumber="49" type="typus">
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<paragraph id="0E05742C32FE7409CC0CA4A3A4B143E9" pageId="0" pageNumber="49">Typus.</paragraph>
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<paragraph id="152FC4C001C0453606E23E44591D281C" pageId="0" pageNumber="49">
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The Netherlands. North Holland province, Amsterdam, isolated from garden soil, Mar. 2017, J.F.T.M. van Dijk (
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<emphasis id="0217A399CAB52BFEF9DD97D5AC117EA1" bold="true" italics="true" pageId="0" pageNumber="49">holotype</emphasis>
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designated here CBS H-24112; living ex-type culture CBS 143011 = JW 1073).
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</paragraph>
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<paragraph id="F2D24DB31DB60BD77191DAB4913E6105" pageId="0" pageNumber="49">
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<emphasis id="64DE01A71791C589F60737C68129EB7B" italics="true" pageId="0" pageNumber="49">Conidiomata</emphasis>
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pycnidial, produced on the agar surface, scattered or aggregated, solitary, (sub-)globose, confluent and irregularly-shaped with age, pale brown, covered in abundant long and thin mycelium hair, 150-340
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<normalizedToken id="8D856EEFED6E5DE3EF016637ADBF3718" originalValue="×">x</normalizedToken>
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130-250
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<normalizedToken id="38C518D157F89D465B6FD8313A5C0B17" originalValue="μm">μm</normalizedToken>
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; with 1-2 slightly papillate or non-papillate ostioles, sometimes elongated to a short neck; pycnidial wall pseudoparenchymatous, 3-5 layers, 13-25
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<normalizedToken id="BCE85283D4E9F858C89134444046A9EF" originalValue="μm">μm</normalizedToken>
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thick, outer layers composed of brown, flattened, polygonal cells of 10-23
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<normalizedToken id="445850E21DAE17473D1FD447D5EDE578" originalValue="μm">μm</normalizedToken>
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diam.
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<emphasis id="F3F857FADAC4CE936F011AAD7F64EC75" italics="true" pageId="0" pageNumber="49">Conidiogenous cells</emphasis>
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phialidic, hyaline, smooth, globose, ampulliform, lageniform or subglobose, 5-8(-9.5)
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<normalizedToken id="BCED3283ADCEF40E4CAC9D16E7F67928" originalValue="×">x</normalizedToken>
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4-8
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<normalizedToken id="A32B5E89F2D6B557C8FF898093914101" originalValue="μm">μm</normalizedToken>
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.
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<emphasis id="C29F21F5762FD6DFBF51FA3A1D998E24" italics="true" pageId="0" pageNumber="49">Conidia</emphasis>
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ellipsoidal to oblong, smooth- and thin-walled, hyaline, aseptate, 3.5-5.5
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<normalizedToken id="6D825873686067BE8A8FA2FCBD22E00A" originalValue="×">x</normalizedToken>
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2-2.5
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<normalizedToken id="B339257CF66201674B657BCC31F9DE68" originalValue="μm">μm</normalizedToken>
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, (1-)2(-3)-guttulate.
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<taxonomicName id="84A457E8E3B4DEB07DB896C40A3AF007" genus="Conidial" lsidName="Conidial matrix" pageId="0" pageNumber="49" rank="species" species="matrix">
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<emphasis id="E3C05526E3EB837F1F787BF8F4774574" italics="true" pageId="0" pageNumber="49">Conidial matrix</emphasis>
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</taxonomicName>
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whitish.
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</paragraph>
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</subSubSection>
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<subSubSection id="BCD8E15B3D23A971BB96E553D9726369" pageId="0" pageNumber="49" type="description">
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<paragraph id="2D920CD1E1FE1E7E0EFC5F55EF0299E9" pageId="0" pageNumber="49">Culture characteristics.</paragraph>
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<paragraph id="CAAE15682F67C4B0693BE7D6C589A52F" pageId="0" pageNumber="49">Colonies after 7 d at 25 °C, on OA reaching 75-80 mm diam after 7 d, covered by woolly aerial mycelium, concentric circles, pale olivaceous grey, pink, pale greenish grey, whitish near the edge, margin regular; reverse concentric circles dark brown, pale brown, orange, and pale olivaceous. On MEA reaching 75-80 mm diam, aerial mycelium woolly, margin regular, pale olivaceous grey; reverse dark brown, reddish towards the periphery. On PDA reaching 75-80 mm diam, margin regular, covered by felty aerial mycelium, pale olivaceous grey or olivaceous grey, with whitish parts near the centre or through the plate; reverse zonate, orange to reddish, brown and yellow. NaOH spot test: a coral discolouration on OA.</paragraph>
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</subSubSection>
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<subSubSection id="1FCA1C7A86811D3B63F3DAB1CB910FB6" pageId="0" pageNumber="49" type="additional specimen examined">
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<paragraph id="A1DE715C10FD41FF6C858DFE264BDE55" pageId="0" pageNumber="49">Additional specimen examined.</paragraph>
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<paragraph id="CE20082C8BF12F0565B5327A09765A70" pageId="0" pageNumber="49">The Netherlands. North Holland province, Amsterdam, isolated from garden soil, Mar. 2017, J.F.T.M. van Dijk, CBS 144948 = JW 1068.</paragraph>
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</subSubSection>
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<subSubSection id="77B27A6E8884109490132848440A19B9" pageId="0" pageNumber="49" type="notes">
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<paragraph id="ED40ED9D82020D5A99CA934171E38F02" pageId="0" pageNumber="49">Notes.</paragraph>
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<paragraph id="E8EAEBF8B45BCE3D53E06E3C41F59DEA" pageId="0" pageNumber="49">
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The new genus
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<taxonomicName id="D1B5C4228C9CA2F71817612F1EC19302" authorityName="Hern. - Restr., L. W. Hou, L. Cai & Crous" authorityYear="2020" class="Dothideomycetes" family="Didymellaceae" genus="Vandijckomycella" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Vandijckomycella" order="Pleosporales" pageId="0" pageNumber="49" phylum="Ascomycota" rank="genus">
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<emphasis id="6E09B4145126D7BB901F1911E7DA6153" italics="true" pageId="0" pageNumber="49">Vandijckomycella</emphasis>
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</taxonomicName>
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is introduced to accommodate two new species isolated from soil samples which form an independent lineage in
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<taxonomicName id="5A011051038F6BE3ED80A70B66FF0A1B" authorityName="Hern. - Restr., L. W. Hou, L. Cai & Crous" authorityYear="2020" class="Dothideomycetes" family="Didymellaceae" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="" order="Pleosporales" pageId="0" pageNumber="49" phylum="Ascomycota" rank="family">Didymellaceae</taxonomicName>
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, being clearly separated from other genera (Figure
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<figureCitation id="F31EF25A6997D6A8988166196E281771" captionStart="Figure 1" captionStartId="F1" captionText="Figure 1. Phylogenetic tree generated from the maximum-likelihood analysis based on the combined ITS, LSU, tub 2 and rpb 2 sequence alignment of Didymellaceae members. The RAxML bootstrap support values (BS), Bayesian posterior probabilities (PP), and parsimony bootstrap support values (PBS) are given at the nodes (BS / PP / PBS). BS and PBS values represent parsimony bootstrap support values> 50 %. Full supported branches are indicated in bold. The scale bar represents the expected number of changes per site. Ex-type strains are represented in bold. Strains obtained in the current study are printed in green; among them, whilst strains that represent new taxa are printed in red. Some of the basal branches were shortened to facilitate layout (the fraction in round parentheses refers to the presented length compared to the actual length of the branch). The tree was rooted to Coniothyrium palmarum CBS 400.71 and Leptosphaeria doliolum CBS 505.75." figureDoi="10.3897/mycokeys.65.47704.figure1" httpUri="https://binary.pensoft.net/fig/388204" pageId="0" pageNumber="49">1</figureCitation>
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). Based on the phylogenetic analysis,
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<taxonomicName id="43B39777D9844E2F93B0EAD4235EF021" lsidName="V. joseae" pageId="0" pageNumber="49" rank="species" species="joseae">
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<emphasis id="441EEA8990E74F10655524930A95516B" italics="true" pageId="0" pageNumber="49">V. joseae</emphasis>
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</taxonomicName>
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forms a distinct lineage which is distant from the nearest species
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<taxonomicName id="E4AD86EF63E54FC5A86D2721853C107B" lsidName="V. snoekiae" pageId="0" pageNumber="49" rank="species" species="snoekiae">
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<emphasis id="57D95D6D882F3CF1F15B41B0F5F3DE38" italics="true" pageId="0" pageNumber="49">V. snoekiae</emphasis>
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</taxonomicName>
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, and chiefly differs on
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<emphasis id="F1F217BC91DC31A52B93CE7456D4662E" italics="true" pageId="0" pageNumber="49">tub2</emphasis>
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and
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<emphasis id="AA5E344ED44A1D98E39CEF4A74BBD5EF" italics="true" pageId="0" pageNumber="49">rpb2</emphasis>
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sequences. Morphological differences between
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<taxonomicName id="7BF8A5F499B4D704B07C2AD0648D62DA" lsidName="V. joseae" pageId="0" pageNumber="49" rank="species" species="joseae">
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<emphasis id="B19DEE702ECEF98324019377AAFBB9A5" italics="true" pageId="0" pageNumber="49">V. joseae</emphasis>
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</taxonomicName>
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and
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<taxonomicName id="ACA8C60D30504C8AE99E0D2CBE3F8E66" lsidName="V. snoekiae" pageId="0" pageNumber="49" rank="species" species="snoekiae">
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<emphasis id="99F5273E1E5AACCF89B5CFBF80735A82" italics="true" pageId="0" pageNumber="49">V. snoekiae</emphasis>
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</taxonomicName>
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are discussed under the latter species.
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<taxonomicName id="F863424A9967622A5585446DA262E16E" authorityName="Hern. - Restr., L. W. Hou, L. Cai & Crous" authorityYear="2020" class="Dothideomycetes" family="Didymellaceae" genus="Vandijckomycella" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Vandijckomycella joseae" order="Pleosporales" pageId="0" pageNumber="49" phylum="Ascomycota" rank="species" species="joseae">
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<emphasis id="B03011D7D3CB5B917263FCC8BA08B316" italics="true" pageId="0" pageNumber="49">Vandijckomycella joseae</emphasis>
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</taxonomicName>
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is characterised by producing pycnidia with longer whitish hyphal outgrowths, and with elongated necks.
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</paragraph>
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<caption id="8F5582F89D27F27A8601E5F0B7D186D6" doi="10.3897/mycokeys.65.47704.figure11" httpUri="https://binary.pensoft.net/fig/388214" pageId="0" pageNumber="49" start="Figure 11" startId="F11">
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<paragraph id="7CB2B786A8F16EABA20400F565397F2F" pageId="0" pageNumber="49">
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<emphasis id="FAF12A9211BF5D5F4F1E6B351CBEBB07" bold="true" pageId="0" pageNumber="49">Figure 11.</emphasis>
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<taxonomicName id="B3F206764502796E1EB92615C0200715" authorityName="Hern. - Restr., L. W. Hou, L. Cai & Crous" authorityYear="2020" class="Dothideomycetes" family="Didymellaceae" genus="Vandijckomycella" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Vandijckomycella joseae" order="Pleosporales" pageId="0" pageNumber="49" phylum="Ascomycota" rank="species" species="joseae">
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<emphasis id="B614D2074066278EAE47600A135B7AAD" italics="true" pageId="0" pageNumber="49">Vandijckomycella joseae</emphasis>
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</taxonomicName>
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(CBS 143011).
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<emphasis id="F47A4237D791DC8DC8DF5BFAE1B13BC3" bold="true" pageId="0" pageNumber="49">A, B</emphasis>
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Colony on OA (front and reverse)
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<emphasis id="B7568A86FA053BC3A5484D5AC382E1C8" bold="true" pageId="0" pageNumber="49">C, D</emphasis>
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colony on MEA (front and reverse)
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<emphasis id="6F3864655E32351ECCB548FF41D036D1" bold="true" pageId="0" pageNumber="49">E, F</emphasis>
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colony on PDA (front and reverse)
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<emphasis id="72578261E378E45E74B87D8734CF099D" bold="true" pageId="0" pageNumber="49">G, H</emphasis>
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pycnidia forming on OA
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<emphasis id="453CE8BE57E25AEEB81C46F15A4D50FD" bold="true" pageId="0" pageNumber="49">I, J</emphasis>
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section of pycnidial wall
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<emphasis id="8B07F71B1F3C5D46E28E044479D40048" bold="true" pageId="0" pageNumber="49">K-N</emphasis>
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conidiogenous cells
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<emphasis id="437EFB7BB3AEEA581978C2A9A4C7DC2C" bold="true" pageId="0" pageNumber="49">O</emphasis>
|
||
conidia. Scale bars: 100
|
||
<normalizedToken id="43CAA060C33DF602FCE3427FF3318547" originalValue="μm">μm</normalizedToken>
|
||
(
|
||
<emphasis id="E70205D51E81575099CA9427B1AC1E6D" bold="true" pageId="0" pageNumber="49">H</emphasis>
|
||
); 20
|
||
<normalizedToken id="64DF208AAE1883A5D621D3083EF38526" originalValue="μm">μm</normalizedToken>
|
||
(
|
||
<emphasis id="19C3C37EF2FEF45F3F9D3C76F14A4557" bold="true" pageId="0" pageNumber="49">I</emphasis>
|
||
); 10
|
||
<normalizedToken id="562FAA12D193CB0F95E2BDE38CB5C136" originalValue="μm">μm</normalizedToken>
|
||
(
|
||
<emphasis id="C0D101F0E88E616FF202FA98A34781D4" bold="true" pageId="0" pageNumber="49">J</emphasis>
|
||
); 5
|
||
<normalizedToken id="0BF67409C1E1B84D185519E5F83570E3" originalValue="μm">μm</normalizedToken>
|
||
(
|
||
<emphasis id="3CD518D3EC89F3D4DA5F9A33DF6AD57A" bold="true" pageId="0" pageNumber="49">K-O</emphasis>
|
||
).
|
||
</paragraph>
|
||
</caption>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |