167 lines
14 KiB
XML
167 lines
14 KiB
XML
<document id="080AC07822509696B756D2A3418A569D" ID-DOI="10.12651/JSR.2020.9.1.035" ID-ISSN="2713-8615" ID-Zenodo-Dep="12753636" IM.bibliography_approvedBy="felipe" IM.illustrations_approvedBy="felipe" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="GgImagineBatch" IM.taxonomicNames_approvedBy="felipe" IM.treatments_approvedBy="felipe" checkinTime="1721183779294" checkinUser="felipe" docAuthor="Kim, Pil Soo, Lee, Ki-Eun, Tak, Euon Jung & Bae, Myung-Suk Kang and Jin-Woo" docDate="2020" docId="03C58D12C815FFA87E4FFC14FB407071" docLanguage="en" docName="JSpeciesRes.9.1.35-45.pdf" docOrigin="Journal of Species Research 9 (1)" docStyle="DocumentStyle:4D398BFF45FF8CA9E08F546BB06AE372.2:JSpeciesRes.2012-.journal_article" docStyleId="4D398BFF45FF8CA9E08F546BB06AE372" docStyleName="JSpeciesRes.2012-.journal_article" docStyleVersion="2" docTitle="Escherichia marmotae VM" docType="treatment" docVersion="2" lastPageNumber="44" masterDocId="FFFCF56AC81CFFA17D66FD11FF8E7547" masterDocTitle="A report of 12 unrecorded prokaryotic species isolated from gastrointestinal tracts and feces of various endangered animals in Korea" masterLastPageNumber="45" masterPageNumber="35" pageNumber="44" updateTime="1721184097902" updateUser="ExternalLinkService" zenodo-license-document="CC-BY-4.0">
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<mods:mods id="6544A918E97A070DDD7BB02210B67274" xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo id="DE74960A1B58E5F9B11D062518989F15">
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<mods:title id="563EC564E030F807A7DBBC51B31BEAE6">A report of 12 unrecorded prokaryotic species isolated from gastrointestinal tracts and feces of various endangered animals in Korea</mods:title>
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</mods:titleInfo>
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<mods:name id="97EA886BE6F19B61A7FD75E8B0F14634" type="personal">
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<mods:role id="260F7BC63E5B36D223108CA68ED9A656">
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<mods:roleTerm id="56D6679AA403CE60BC8B031A7A681DDB">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="094CB9F455A7A849BE21EC6065D8593F">Kim, Pil Soo</mods:namePart>
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<mods:affiliation id="6D8FBF0CE943A0856DA1CC8D268796F8">Department of Biology and Department of Life and Nanopharmaceutical Sciences, Kyung Hee University, Seoul 02447, Republic of Korea</mods:affiliation>
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</mods:name>
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<mods:name id="0FC4D450F0CEA4433283E22F9E0F80E4" type="personal">
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<mods:role id="9438D43536A6D1F85B891EB63A3D4462">
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<mods:roleTerm id="5907E2403006E6063F11D0A1AC47E5A1">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="80348FDBDB0CEF056303A7C7940011ED">Lee, Ki-Eun</mods:namePart>
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<mods:affiliation id="BB0F0BC69E33C030536AC921FFEDA3FF">Microorganism Resources Division, National Institute of Biological Resources, Incheon 22689, Republic of Korea</mods:affiliation>
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</mods:name>
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<mods:name id="8E48AF49E7393B9CD1381CD60F80A4AE" type="personal">
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<mods:role id="AC17C57E37E059110CB2DE89B8DAD16C">
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<mods:roleTerm id="705ADA4C0708C1CBB18BBD19AFD49978">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="808837E95CF9F479A4B4844FB02E11B6">Tak, Euon Jung</mods:namePart>
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<mods:affiliation id="0FD97B0959F028247651603DF9339689">Department of Biology and Department of Life and Nanopharmaceutical Sciences, Kyung Hee University, Seoul 02447, Republic of Korea</mods:affiliation>
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</mods:name>
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<mods:name id="4E144F07E6468FFDB471473B9D22B230" type="personal">
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<mods:role id="15C774A7A3BA351B7D6CFCC8632D656C">
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<mods:roleTerm id="04F42F4ED7B356B0EB086CBB5EE61F8D">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="C96715C86E90245531C8D3930C658A10">Bae, Myung-Suk Kang and Jin-Woo</mods:namePart>
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</mods:name>
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<mods:typeOfResource id="90440CEF6854B14B9A0745C5B480CB76">text</mods:typeOfResource>
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<mods:titleInfo id="0E8BA271592CF7CD3826424DEBB1D6C9">
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<mods:title id="CC941C4BFCC207C4EA69D75D63A46738">Journal of Species Research</mods:title>
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</mods:titleInfo>
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<mods:part id="7361C39FD3C309913B5912574FDA1592">
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<mods:date id="E7000864CC1BDC7B9BB3CC126D43D82E">2020</mods:date>
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<mods:detail id="2339C9CF497350D1EB4F618D61E841B9" type="volume">
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<mods:number id="F0B1812F21608CC77181B4F5AF6C7A5E">9</mods:number>
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</mods:detail>
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<mods:detail id="5A56D6730C80F6A50D58FA7E22477162" type="issue">
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<mods:number id="12CA400FB715F06FC7993262BF58EC14">1</mods:number>
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<mods:extent id="6FDB29069BF34C718AA15E5DF5D02601" unit="page">
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<mods:start id="A03AD9379CCC2559667B1687E79D6DCB">35</mods:start>
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<mods:end id="4606054EDB38AFC871E71E61EEC78921">45</mods:end>
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</mods:extent>
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</mods:part>
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<mods:classification id="AEDF7CEDADFFAE870B1C006C2284B1AA">journal article</mods:classification>
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<mods:identifier id="7889E6E9AE816DC4F57B83B482D1ABE3" type="DOI">10.12651/JSR.2020.9.1.035</mods:identifier>
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<mods:identifier id="8F5BDCAFC23E8D089384040B9DEAD043" type="ISSN">2713-8615</mods:identifier>
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<mods:identifier id="1A0BFF39B4EC6ACF46BB52F6F6F5DE2C" type="Zenodo-Dep">12753636</mods:identifier>
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</mods:mods>
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<treatment id="03C58D12C815FFA87E4FFC14FB407071" LSID="urn:lsid:plazi:treatment:03C58D12C815FFA87E4FFC14FB407071" httpUri="http://treatment.plazi.org/id/03C58D12C815FFA87E4FFC14FB407071" lastPageNumber="44" pageId="9" pageNumber="44">
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<subSubSection id="C3766F8FC815FFA87E4FFC14FA9771F2" pageId="9" pageNumber="44" type="nomenclature">
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<paragraph id="8BD33C04C815FFA87E4FFC14FAA9745A" blockId="9.[809,1319,261,285]" box="[809,1319,261,285]" pageId="9" pageNumber="44">
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<heading id="D09B8B68C815FFA87E4FFC14FAA9745A" box="[809,1319,261,285]" fontSize="10" level="2" pageId="9" pageNumber="44" reason="5">
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<emphasis id="B918E016C815FFA87E4FFC14FAA9745A" bold="true" box="[809,1319,261,285]" pageId="9" pageNumber="44">
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Description of
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<taxonomicName id="4C6C4787C815FFA87EAAFC14FB7C745A" authority="VM" authorityName="VM" box="[972,1266,261,285]" class="Gammaproteobacteria" family="Enterobacteriaceae" genus="Escherichia" kingdom="Bacteria" order="Enterobacteriales" pageId="9" pageNumber="44" phylum="Proteobacteria" rank="species" species="marmotae">
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<emphasis id="B918E016C815FFA87EAAFC14FB4F745B" bold="true" box="[972,1217,261,285]" italics="true" pageId="9" pageNumber="44">Escherichia marmotae</emphasis>
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VM
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</taxonomicName>
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3408
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</emphasis>
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</heading>
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</paragraph>
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<paragraph id="8BD33C04C815FFA87E59FC27FA9771F2" blockId="9.[809,1415,310,1335]" pageId="9" pageNumber="44">
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Cells are Gram-staining positive, non-flagellated, and rod-shaped. Colonies are circular, smooth, convex, and ivory colored after 2 days of incubation on MA at 37℃.
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<subScript id="17E83E41C815FFA87E4FFC8CFCB174E9" attach="none" box="[809,831,407,430]" fontSize="7" pageId="9" pageNumber="44">D-</subScript>
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trehalose,
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<subScript id="17E83E41C815FFA87EC8FC8CFC4B74E9" attach="right" box="[942,965,407,430]" fontSize="7" pageId="9" pageNumber="44">D-</subScript>
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melibiose,
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<emphasis id="B918E016C815FFA8795DFC86FBC474E8" box="[1083,1098,407,431]" italics="true" pageId="9" pageNumber="44">β</emphasis>
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-
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<subScript id="17E83E41C815FFA87935FC8CFBE774E9" attach="none" box="[1107,1129,407,430]" fontSize="7" pageId="9" pageNumber="44">D-</subScript>
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glucoside,
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<emphasis id="B918E016C815FFA879B8FC89FB7E74E8" box="[1246,1264,408,431]" italics="true" pageId="9" pageNumber="44">N</emphasis>
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-glucosamine,
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<emphasis id="B918E016C815FFA87E4FFCA6FCB67488" box="[809,824,439,463]" italics="true" pageId="9" pageNumber="44">β</emphasis>
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-mannosamin,
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<emphasis id="B918E016C815FFA87EB5FCA9FC6B7488" box="[979,997,440,463]" italics="true" pageId="9" pageNumber="44">N</emphasis>
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-galactosamin, neuraminic acid, D- mannose, D- fructose, D- galactose, L- fucose, L- rhamnose, inosine, sodium lactate, fusidic acid, D- sorbitol, glycerol,
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<subScript id="17E83E41C815FFA87E4FFF0FFCB17768" attach="none" box="[809,831,536,559]" fontSize="7" pageId="9" pageNumber="44">D-</subScript>
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glucose,
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<subScript id="17E83E41C815FFA87EFDFF0FFC3F7768" attach="right" box="[923,945,536,559]" fontSize="7" pageId="9" pageNumber="44">D-</subScript>
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fructose,
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<subScript id="17E83E41C815FFA87976FF0FFBA97768" attach="right" box="[1040,1063,536,559]" fontSize="7" pageId="9" pageNumber="44">D-</subScript>
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serine, troleandomycin, rifamycin SV, glycyl-L- proline, L- alanine, L- aspartic acid, L- glutamic acid, L- serine, lincomycin, guanidinium chloride, niaproof 4, galacturonic acid,
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<subScript id="17E83E41C815FFA87967FF6EFB9D77D6" attach="right" box="[1025,1043,633,657]" fontSize="7" pageId="9" pageNumber="44">L-</subScript>
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galactonic lactone,
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<subScript id="17E83E41C815FFA879B8FF6EFB7A77D7" attach="right" box="[1246,1268,633,656]" fontSize="7" pageId="9" pageNumber="44">D-</subScript>
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gluconic acid,
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<subScript id="17E83E41C815FFA87E4FFF8EFCB177F7" attach="none" box="[809,831,665,688]" fontSize="7" pageId="9" pageNumber="44">D-</subScript>
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glucuronic acid, glucuronamide, mucic acid,
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<subScript id="17E83E41C815FFA8787CFF8EFABE77F7" attach="right" box="[1306,1328,665,688]" fontSize="7" pageId="9" pageNumber="44">D-</subScript>
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saccharic acid, vancomycin, tetrazolium violet, tetrazolium blue, methyl pyruvate, L- lactic acid,
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<emphasis id="B918E016C815FFA879E7FFCBFB1F77B6" box="[1153,1169,730,753]" italics="true" pageId="9" pageNumber="44">α</emphasis>
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-glutaric acid, D- malic acid,
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<subScript id="17E83E41C815FFA87E07FE11FCFD7655" attach="right" box="[865,883,762,786]" fontSize="7" pageId="9" pageNumber="44">L-</subScript>
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malic acid, succinic acid, nalidixic acid,
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<emphasis id="B918E016C815FFA8787CFFEBFAA47656" box="[1306,1322,762,785]" italics="true" pageId="9" pageNumber="44">α</emphasis>
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-butryric acid,
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<emphasis id="B918E016C815FFA87E07FE0BFCFE7675" box="[865,880,794,818]" italics="true" pageId="9" pageNumber="44">β</emphasis>
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-butryric acid, propionic acid, acetic acid, and sodium butyrate are utilized as the sole source of carbon (Biolog
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<collectionCode id="ED7DA4C1C815FFA87E06FE4AFC187634" box="[864,918,859,883]" pageId="9" pageNumber="44">GEN</collectionCode>
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<collectionCode id="ED7DA4C1C815FFA87EF9FE4AFC337634" box="[927,957,859,883]" pageId="9" pageNumber="44">III</collectionCode>
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). Positive for following enzyme activities: nitrate reduction, indole production, glucose acidification,
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<emphasis id="B918E016C815FFA87E4FFE8AFCB676F4" box="[809,824,923,947]" italics="true" pageId="9" pageNumber="44">β</emphasis>
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-galactosidase, alkaline phosphatase, esterase (C4), leucine arylamidase, valine arylamidase, cystine arylamidase, trypsin, acid phosphatase, naphthol-AS-BI-phosphohydrolase,
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<emphasis id="B918E016C815FFA87EFAFEEDFC257153" box="[924,939,1020,1044]" italics="true" pageId="9" pageNumber="44">β</emphasis>
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-galactosidase, and
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<emphasis id="B918E016C815FFA8791FFEECFB077153" box="[1145,1161,1021,1044]" italics="true" pageId="9" pageNumber="44">α</emphasis>
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-glucosidase (
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<collectionCode id="ED7DA4C1C815FFA87871FEEDFACD7153" box="[1303,1347,1020,1044]" pageId="9" pageNumber="44">API</collectionCode>
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<collectionCode id="ED7DA4C1C815FFA8782DFEEDFA087154" box="[1355,1414,1020,1043]" pageId="9" pageNumber="44">ZYM</collectionCode>
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and
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<collectionCode id="ED7DA4C1C815FFA87E30F90DFC0F7173" box="[854,897,1052,1076]" pageId="9" pageNumber="44">API</collectionCode>
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20NE). Positive for the utilization of following substrates: D- mannitol, D- glucose, D- melibiose, L- fucose,
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<subScript id="17E83E41C815FFA87E4FF972FCB17133" attach="none" box="[809,831,1117,1140]" fontSize="7" pageId="9" pageNumber="44">D-</subScript>
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sorbitol,
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<subScript id="17E83E41C815FFA87EFDF972FC237132" attach="right" box="[923,941,1117,1141]" fontSize="7" pageId="9" pageNumber="44">L-</subScript>
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arabinose, propionate,
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<subScript id="17E83E41C815FFA879FDF972FB237132" attach="right" box="[1179,1197,1117,1141]" fontSize="7" pageId="9" pageNumber="44">L-</subScript>
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proline,
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<subScript id="17E83E41C815FFA87860F972FA967132" attach="right" box="[1286,1304,1117,1141]" fontSize="7" pageId="9" pageNumber="44">L-</subScript>
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rhamnose,
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<emphasis id="B918E016C815FFA87E4FF96FFCB571D2" box="[809,827,1150,1173]" italics="true" pageId="9" pageNumber="44">N</emphasis>
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-acetyl-glucosamine,
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<subScript id="17E83E41C815FFA87979F992FBB871D3" attach="right" box="[1055,1078,1149,1172]" fontSize="7" pageId="9" pageNumber="44">D-</subScript>
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ribose,
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<subScript id="17E83E41C815FFA879E3F992FB1571D3" attach="right" box="[1157,1179,1149,1172]" fontSize="7" pageId="9" pageNumber="44">D-</subScript>
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maltose, acetate,
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<subScript id="17E83E41C815FFA87830F992FAEC71D4" attach="right" box="[1366,1378,1155,1171]" fontSize="7" pageId="9" pageNumber="44">D</subScript>
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,
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<subScript id="17E83E41C815FFA87817F992FA0871D3" attach="right" box="[1393,1414,1149,1172]" fontSize="7" pageId="9" pageNumber="44">L-</subScript>
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lactate, L- alanine, and L- serine (
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<collectionCode id="ED7DA4C1C815FFA87908F98CFB1471F2" box="[1134,1178,1181,1205]" pageId="9" pageNumber="44">API</collectionCode>
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ID 32
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<collectionCode id="ED7DA4C1C815FFA87985F98CFA8371F2" box="[1251,1293,1181,1205]" pageId="9" pageNumber="44">GN</collectionCode>
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).
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</paragraph>
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</subSubSection>
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<subSubSection id="C3766F8FC815FFA87E26F9ACFB407071" pageId="9" pageNumber="44" type="description">
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<paragraph id="8BD33C04C815FFA87E26F9ACFB407071" blockId="9.[809,1415,310,1335]" pageId="9" pageNumber="44">
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<materialsCitation id="3B043659C815FFA87E26F9ACFB3B7071" collectorName="Strain VM" country="South Korea" location="Gyeonggi Province" pageId="9" pageNumber="44" specimenCount="1" stateProvince="Gyeonggi">
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<collectorName id="269959D2C815FFA87E26F9ACFC3D7191" box="[832,947,1213,1238]" pageId="9" pageNumber="44">Strain VM</collectorName>
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3408 (= NIBRBAC000499831) was isolat- ed from the feces of an Andean condor (
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<taxonomicName id="4C6C4787C815FFA879BFF9CFFAF871B1" authorityName="Linnaeus" authorityYear="1758" box="[1241,1398,1246,1270]" class="Aves" family="Cathartidae" genus="Vultur" kingdom="Animalia" order="Accipitriformes" pageId="9" pageNumber="44" phylum="Chordata" rank="species" species="gryphus">
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<emphasis id="B918E016C815FFA879BFF9CFFAF871B1" box="[1241,1398,1246,1270]" italics="true" pageId="9" pageNumber="44">Vultur gryphus</emphasis>
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</taxonomicName>
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), Gwacheon,
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<collectingRegion id="49A8F2E6C815FFA87ECFF9EFFBF77051" box="[937,1145,1278,1302]" country="South Korea" name="Gyeonggi" pageId="9" pageNumber="44">Gyeonggi Province</collectingRegion>
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,
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<collectingCountry id="F37B7C94C815FFA879E3F9EEFB477051" box="[1157,1225,1279,1302]" name="South Korea" pageId="9" pageNumber="44">Korea</collectingCountry>
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. The DNA G + C content of the
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<typeStatus id="54D782A6C815FFA87ED8F80EFC657070" box="[958,1003,1311,1335]" pageId="9" pageNumber="44">type</typeStatus>
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strain is 48.49 mol
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</materialsCitation>
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%.
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |