117 lines
13 KiB
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117 lines
13 KiB
XML
<document id="AD823996A4940E3F792EE63A14581EC2" ID-DOI="10.11646/phytotaxa.619.2.1" ID-GBIF-Dataset="150349a6-c660-4fef-a785-96301d709909" ID-ISSN="1179-3163" ID-Zenodo-Dep="8425855" IM.bibliography_approvedBy="juliana" IM.illustrations_approvedBy="juliana" IM.materialsCitations_approvedBy="juliana" IM.metadata_approvedBy="juliana" IM.tables_approvedBy="juliana" IM.taxonomicNames_approvedBy="juliana" IM.treatments_approvedBy="juliana" checkinTime="1696938259094" checkinUser="plazi" docAuthor="Thambugala, Kasun M., Karunarathna, Samantha C., Zhao, Chang-Lin, Elgorban, Abdallah M., Tennakoon, Danushka S. & Konara, Ushari A." docDate="2023" docId="E12C87BDE75C3E54FF47FF01FC74FE7A" docLanguage="en" docName="phytotaxa.619.2.1.pdf" docOrigin="Phytotaxa 619 (2)" docSource="http://dx.doi.org/10.11646/phytotaxa.619.2.1" docStyle="DocumentStyle:96748F8F1B6C902996E134952A3A36B9.7:Phytotaxa.2014-.journal_article" docStyleId="96748F8F1B6C902996E134952A3A36B9" docStyleName="Phytotaxa.2014-.journal_article" docStyleVersion="7" docTitle="Pyrrhoderma" docType="treatment" docVersion="2" lastPageNumber="130" masterDocId="1D15FFC5E75B3E53FFCFFF9FFFB3FFCE" masterDocTitle="Perenniporiopsis srijayewardenepurana sp. nov. and validation of Pyrrhoderma nigrum in Sri Lanka" masterLastPageNumber="136" masterPageNumber="123" pageNumber="130" updateTime="1697042018318" updateUser="ExternalLinkService" zenodo-license-figures="UNSPECIFIED" zenodo-license-treatments="UNSPECIFIED">
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<mods:titleInfo id="7E795FFA0501A187886169F9ADFA69E8">
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<mods:title id="A2FC3885700F05E48BA698B22CA7CB2A">Perenniporiopsis srijayewardenepurana sp. nov. and validation of Pyrrhoderma nigrum in Sri Lanka</mods:title>
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<mods:namePart id="7E9ACB86606E52CEAE8F960A3C2870DF">Thambugala, Kasun M.</mods:namePart>
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<mods:affiliation id="9C01C75BE42FF69ACA14168B8B67214E">Genetics and Molecular Biology Unit, Faculty of Applied Sciences, University of Sri Jayewardenepura, Nugegoda 10250, Sri Lanka & Center for Biotechnology, Department of Zoology, University of Sri Jayewardenepura, Nugegoda, Sri Lanka</mods:affiliation>
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<mods:nameIdentifier id="031D1C83B296D4086F3DD157938E449C" type="email">kasun@sci.sjp.ac.lk</mods:nameIdentifier>
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<mods:namePart id="4E0B7CC9D11CA48EF055BC488BF6E029">Karunarathna, Samantha C.</mods:namePart>
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<mods:affiliation id="29EB3E7746246C02A16CD429509B24BA">Center for Yunnan Plateau Biological Resources Protection and Utilization, College of Biological Resource and Food Engineering, Qujing Normal University, Qujing 655011, China & National Institute of Fundamental Studies, Hantane Road, Kandy, Sri Lanka & samanthakarunarathna @ gmail. com; https: // orcid. org / 0000 - 0001 - 7080 - 0781</mods:affiliation>
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<mods:nameIdentifier id="26F623B47A5D98827A5BD7FF179B8EC5" type="email">samanthakarunarathna@gmail.com</mods:nameIdentifier>
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<mods:namePart id="3A4784AF75585D6DE4799524ADEBECAA">Zhao, Chang-Lin</mods:namePart>
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<mods:affiliation id="4D6EA02161B43062F2233843AC2197A7">Key Laboratory of Forest Disaster Warning and Control in Universities of Yunnan Province, Southwest Forestry University, Kunming 650224, P. R. China & fungichanglinz @ 163. com; https: // orcid. org / 0000 - 0002 - 1395 - 591 X</mods:affiliation>
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<mods:namePart id="A7F27DF3424DB5F727B75DD2EC762E62">Elgorban, Abdallah M.</mods:namePart>
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<mods:affiliation id="363EC105351CBBDD5287BFEE3701EF1F">Department of Botany and Microbiology, College of Science, King Saud University, P. O. 2455, Riyadh, 11451, Saudi Arabia & aelgorban @ ksu. edu. sa; https: // orcid. org / 0000 - 0003 - 3664 - 7853</mods:affiliation>
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<mods:nameIdentifier id="CEBF93A60A43DD8C664C83BBF41962CE" type="email">aelgorban@ksu.edu.sa</mods:nameIdentifier>
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<mods:namePart id="CCF9DA7C23D0EDB620D38D914E669825">Tennakoon, Danushka S.</mods:namePart>
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<mods:nameIdentifier id="A9E6B81CF524CBDF7F890F0F48DF1DAA" type="ORCID">0000-0003-2306-1255</mods:nameIdentifier>
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<mods:affiliation id="EAE782358170FBFB72FFFE74AEFB381D">Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand & Research Center of Microbial Diversity and Sustainable Utilization, Faculty of Science, Chiang Mai University, Chiang Mai, Thailand kasun @ sci. sjp. ac. lk; https: // orcid. org / 0000 - 0002 - 6210 - 0504 & danushkasandaruwanatm @ gmail. com; https: // orcid. org / 0000 - 0003 - 2306 - 1255</mods:affiliation>
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<mods:nameIdentifier id="3539F0DED902E3A81A7991FA86B3D8C4" type="email">danushkasandaruwanatm@gmail.com</mods:nameIdentifier>
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<mods:namePart id="D22366AF0B80C45F844B163E2625D3D9">Konara, Ushari A.</mods:namePart>
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<mods:affiliation id="823D48461FA2D71261D3F4AFE5CDC425">Genetics and Molecular Biology Unit, Faculty of Applied Sciences, University of Sri Jayewardenepura, Nugegoda 10250, Sri Lanka & usharikonaramck @ gmail. com; https: // orcid. org / 0009 - 0005 - 4767 - 4277</mods:affiliation>
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<mods:nameIdentifier id="4008637804C9C9BBFCA05D9582FDA87B" type="email">usharikonaramck@gmail.com</mods:nameIdentifier>
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<mods:title id="970691486C27C56AACBD0231B0C5F58F">Phytotaxa</mods:title>
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<mods:date id="9B36A37F8DFA2C256CE8F6779BC2D51F">2023</mods:date>
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<mods:number id="0385070F6810182CDEA7FFD230E3A7B2">2023-10-06</mods:number>
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<mods:number id="101F56025F3F371ACF95972437C4B84C">619</mods:number>
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<mods:classification id="813DEEC8991BACC6F816EAA9D63FDABB">journal article</mods:classification>
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<treatment id="E12C87BDE75C3E54FF47FF01FC74FE7A" ID-DOI="http://doi.org/10.5281/zenodo.8432247" ID-Zenodo-Dep="8432247" LSID="urn:lsid:plazi:treatment:E12C87BDE75C3E54FF47FF01FC74FE7A" httpUri="http://treatment.plazi.org/id/E12C87BDE75C3E54FF47FF01FC74FE7A" lastPageNumber="130" pageId="7" pageNumber="130">
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<subSubSection id="219F6520E75C3E54FF47FF01FEADFF76" box="[136,286,158,184]" pageId="7" pageNumber="130" type="nomenclature">
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<paragraph id="693A36ABE75C3E54FF47FF01FEADFF76" blockId="7.[136,286,158,184]" box="[136,286,158,184]" pageId="7" pageNumber="130">
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<taxonomicName id="AE854D28E75C3E54FF47FF01FEADFF76" ID-CoL="766V" ID-ENA="175660" authority="Imazeki" box="[136,286,158,184]" class="Agaricomycetes" family="Hymenochaetaceae" genus="Pyrrhoderma" kingdom="Fungi" order="Hymenochaetales" pageId="7" pageNumber="130" phylum="Basidiomycota" rank="genus">
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<emphasis id="5BF1EAB9E75C3E54FF47FF01FEADFF76" box="[136,286,158,184]" italics="true" pageId="7" pageNumber="130">Pyrrhoderma</emphasis>
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</taxonomicName>
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</paragraph>
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<subSubSection id="219F6520E75C3E54FF47FF79FC74FE7A" pageId="7" pageNumber="130" type="description">
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<paragraph id="693A36ABE75C3E54FF47FF79FC74FE7A" blockId="7.[136,1452,230,437]" pageId="7" pageNumber="130">
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The second phylogenetic analysis (
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<figureCitation id="F1BE2A2EE75C3E54FDC2FF79FDDEFECE" box="[525,621,230,256]" captionStart="FIGURE 2" captionStartId="7.[136,229,1720,1742]" captionTargetBox="[261,1326,466,1687]" captionTargetId="figure-114@7.[261,1326,461,1695]" captionTargetPageId="7" captionText="FIGURE 2. The phylogram generated from the maximum likelihood analysis of combined ITS and LSU sequences from Pyrrhoderma and related taxa (Final likelihood value of -8507.985969).The tree is rooted with Oxyporus populinus (Dai 8908). The new newly recorded species are indicated in red. Bootstrap support values ≥65% from the maximum likelihood (ML) and Bayesian posterior probabilities (PP) values ≥0.90 are given above the nodes." figureDoi="http://doi.org/10.5281/zenodo.8425861" httpUri="https://zenodo.org/record/8425861/files/figure.png" pageId="7" pageNumber="130">Figure 2</figureCitation>
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) included 50 taxa incorporating the sequences of two new strains. The tree was inferred from the combined ITS and LSU sequences, which comprise 853 characters. The best scoring maximum likelihood tree (-8507.985969) is shown in
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<figureCitation id="F1BE2A2EE75C3E54FDA2FEB1FD02FE86" box="[621,689,302,328]" captionStart="FIGURE 2" captionStartId="7.[136,229,1720,1742]" captionTargetBox="[261,1326,466,1687]" captionTargetId="figure-114@7.[261,1326,461,1695]" captionTargetPageId="7" captionText="FIGURE 2. The phylogram generated from the maximum likelihood analysis of combined ITS and LSU sequences from Pyrrhoderma and related taxa (Final likelihood value of -8507.985969).The tree is rooted with Oxyporus populinus (Dai 8908). The new newly recorded species are indicated in red. Bootstrap support values ≥65% from the maximum likelihood (ML) and Bayesian posterior probabilities (PP) values ≥0.90 are given above the nodes." figureDoi="http://doi.org/10.5281/zenodo.8425861" httpUri="https://zenodo.org/record/8425861/files/figure.png" pageId="7" pageNumber="130">Fig. 2</figureCitation>
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. The tree topologies of the ML and MP were similar to the Bayesian analysis. The dataset represents
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<taxonomicName id="AE854D28E75C3E54FE30FECDFD26FEA2" box="[511,661,338,364]" class="Agaricomycetes" family="Hymenochaetaceae" genus="Pyrrhoderma" kingdom="Fungi" order="Hymenochaetales" pageId="7" pageNumber="130" phylum="Basidiomycota" rank="genus">
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<emphasis id="5BF1EAB9E75C3E54FE30FECDFD26FEA2" box="[511,661,338,364]" italics="true" pageId="7" pageNumber="130">Pyrrhoderma</emphasis>
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</taxonomicName>
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and other related taxa, with
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<taxonomicName id="AE854D28E75C3E54FC22FECCFB60FEA2" box="[1005,1235,338,365]" class="Agaricomycetes" family="Schizoporaceae" genus="Oxyporus" kingdom="Fungi" order="Hymenochaetales" pageId="7" pageNumber="130" phylum="Basidiomycota" rank="species" species="populinus">
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<emphasis id="5BF1EAB9E75C3E54FC22FECCFB60FEA2" box="[1005,1235,338,365]" italics="true" pageId="7" pageNumber="130">Oxyporus populinus</emphasis>
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</taxonomicName>
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(Dai 8908) as the outgroup taxa. The dataset comprised 853 total characters, of which 421 were constant, 338 variable characters were parsimony-informative, and 94 characters were parsimony-uninformative.
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</paragraph>
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</treatment>
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