238 lines
23 KiB
XML
238 lines
23 KiB
XML
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<mods:title id="3495E44B6EA17796C8B395C73C9112A0">A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae</mods:title>
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<mods:namePart id="8177E34747E7A2025D57E1A6EA72FDF1">Zheng, Jinshui</mods:namePart>
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<mods:title id="E88B850FB7F08FF6E2A322282550FFB5">International Journal of Systematic and Evolutionary Microbiology</mods:title>
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<mods:date id="AF72C529CD3665F73F70D90FD49AB535">2020</mods:date>
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<mods:number id="B79F0B762C1096E07DAC309BDF97CC7D">70</mods:number>
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<mods:identifier id="48F804803984A286F99602B638A7794C" type="DOI">10.1099/ijsem.0.004107</mods:identifier>
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<treatment id="03A8D903D23C0272FC95FD975424351B" ID-DOI="http://doi.org/10.5281/zenodo.4728764" ID-GBIF-Taxon="181761536" ID-Zenodo-Dep="4728764" LSID="urn:lsid:plazi:treatment:03A8D903D23C0272FC95FD975424351B" httpUri="http://treatment.plazi.org/id/03A8D903D23C0272FC95FD975424351B" lastPageNumber="2833" pageId="51" pageNumber="2833">
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<subSubSection id="C31B3B9ED23C0272FC95FD97556331BB" pageId="51" pageNumber="2833" type="nomenclature">
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<paragraph id="8BBE6815D23C0272FC95FD97556331BB" blockId="51.[828,1466,611,745]" pageId="51" pageNumber="2833">
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<emphasis id="B975B407D23C0272FC95FD97556331BB" bold="true" pageId="51" pageNumber="2833">
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DESCRIPTIONOF
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<taxonomicName id="4C011396D23C0272FB9CFD9752B731BB" authority="REUTERI" authorityName="REUTERI" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" class="Bacilli" family="Lactobacillaceae" genus="Limosilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="51" pageNumber="2833" phylum="Firmicutes" rank="species" species="reuteri" status="comb. nov.">
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<emphasis id="B975B407D23C0272FB9CFD9752B731BB" bold="true" italics="true" pageId="51" pageNumber="2833">LIMOSILACTOBACILLUS REUTERI</emphasis>
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</taxonomicName>
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<taxonomicNameLabel id="A246097CD23C0272FC15FD7C556331BB" box="[956,1121,648,677]" pageId="51" pageNumber="2833" rank="species">COMB. NOV.</taxonomicNameLabel>
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</emphasis>
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection id="C31B3B9ED23C0272FC95FD4655E037CD" pageId="51" pageNumber="2833" type="discussion">
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<paragraph id="8BBE6815D23C0272FC95FD46548531F6" blockId="51.[828,1466,611,745]" pageId="51" pageNumber="2833">
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<taxonomicName id="4C011396D23C0272FC95FD46555131D7" box="[828,1107,690,714]" class="Bacilli" family="Lactobacillaceae" genus="Limosilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="51" pageNumber="2833" phylum="Firmicutes" rank="species" species="reuteri">
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<emphasis id="B975B407D23C0272FC95FD46555131D7" box="[828,1107,690,714]" italics="true" pageId="51" pageNumber="2833">Limosilactobacillus reuteri</emphasis>
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</taxonomicName>
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(reu
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<emphasis id="B975B407D23C0272FB21FD44558C31D4" bold="true" box="[1160,1166,688,714]" italics="true" pageId="51" pageNumber="2833">′</emphasis>
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te.ri. N.L. gen. n.
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<taxonomicName id="4C011396D23C0272FAF9FD46549431D7" box="[1360,1430,690,713]" class="Bacilli" family="Lactobacillaceae" genus="Limosilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="51" pageNumber="2833" phylum="Firmicutes" rank="species" species="reuteri">
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<emphasis id="B975B407D23C0272FAF9FD46549431D7" box="[1360,1430,690,713]" italics="true" pageId="51" pageNumber="2833">reuteri</emphasis>
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</taxonomicName>
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, of Reuter; named for G. Reuter, a German bacteriologist).
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</paragraph>
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<paragraph id="8BBE6815D23C0272FC95FD0B54903015" blockId="51.[828,1426,765,791]" box="[828,1426,765,791]" pageId="51" pageNumber="2833">
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Basonym:
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<taxonomicName id="4C011396D23C0272FC02FD0A544C3008" authority="Kandler et al. 1982" authorityName="Kandler" authorityYear="1982" box="[939,1358,766,790]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="51" pageNumber="2833" phylum="Firmicutes" rank="species" species="reuteri">
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<emphasis id="B975B407D23C0272FC02FD0A55823008" box="[939,1152,766,790]" italics="true" pageId="51" pageNumber="2833">Lactobacillus reuteri</emphasis>
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Kandler
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<emphasis id="B975B407D23C0272FB48FD0B540F3008" box="[1249,1293,766,790]" italics="true" pageId="51" pageNumber="2833">et al</emphasis>
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. 1982
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</taxonomicName>
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, 266
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<superScript id="7C74C55DD23C0272FAD6FD0954903015" attach="none" box="[1407,1426,765,779]" fontSize="6" pageId="51" pageNumber="2833">VL</superScript>
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</paragraph>
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<paragraph id="8BBE6815D23C0272FC95FCD855E037CD" blockId="51.[828,1468,812,1235]" pageId="51" pageNumber="2833">
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||
Prior to 1980, strains of the species were classified as
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<taxonomicName id="4C011396D23C0272FA0FFCD9552B307C" authority="Biotype II" authorityName="Biotype II" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="51" pageNumber="2833" phylum="Firmicutes" rank="species" species="fermentum">
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||
<emphasis id="B975B407D23C0272FA0FFCD952B0307D" italics="true" pageId="51" pageNumber="2833">L. fermentum</emphasis>
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Biotype II
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</taxonomicName>
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||
[
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||
<bibRefCitation id="EF9015E4D23C0272FB90FCBF556A307D" author="Kandler O & Stetter K-O & Kohl R." box="[1081,1128,843,867]" pageId="51" pageNumber="2833" pagination="264 - 269" refId="ref71456" refString="268. Kandler O, Stetter K-O, Kohl R. Lactobacillus reuteri sp. nov., a new species of heterofermentative lactobacilli. Zentralbl Bakteriol Hyg Abt IOrig C 1980; 1: 264 - 269." type="journal article" year="1980">268</bibRefCitation>
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]. The species has been studied as model species to determine host-adaptation of intestinal lactobacilli, and co-adaptation of
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<taxonomicName id="4C011396D23C0272FB15FC7C548530BE" authorityName="REUTERI" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" box="[1212,1415,904,928]" class="Bacilli" family="Lactobacillaceae" genus="Limosilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="51" pageNumber="2833" phylum="Firmicutes" rank="genus">
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<emphasis id="B975B407D23C0272FB15FC7C548530BE" box="[1212,1415,904,928]" italics="true" pageId="51" pageNumber="2833">Limosilactobacillus</emphasis>
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</taxonomicName>
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||
and
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<taxonomicName id="4C011396D23C0272FC95FC53551D30A1" box="[828,1055,935,959]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="51" pageNumber="2833" phylum="Firmicutes" rank="species" species="undetermined">
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||
<emphasis id="B975B407D23C0272FC95FC5352C530A1" box="[828,967,935,959]" italics="true" pageId="51" pageNumber="2833">Lactobacillus</emphasis>
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species
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</taxonomicName>
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(e.g.
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<taxonomicName id="4C011396D23C0272FBCCFC53540330A0" box="[1125,1281,935,958]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="51" pageNumber="2833" phylum="Firmicutes" rank="species" species="taiwanensis">
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||
<emphasis id="B975B407D23C0272FBCCFC53540330A0" box="[1125,1281,935,958]" italics="true" pageId="51" pageNumber="2833">L. taiwanensis</emphasis>
|
||
</taxonomicName>
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||
) that coexist in biofilms in intestinal ecosystems and preferentially different substrates [
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||
<bibRefCitation id="EF9015E4D23C0272FC1BFC1052CD30E2" author="Lin XB & Wang T & Stothard P & Corander J & Wang J" box="[946,975,996,1020]" pageId="51" pageNumber="2833" pagination="2770 - 2784" refId="ref61649" refString="55. Lin XB, Wang T, Stothard P, Corander J, Wang J et al. The evolution of ecological facilitation within mixed-species biofilms in the mouse gastrointestinal tract. ISME J 2018; 12: 2770 - 2784." type="journal article" year="2018">55</bibRefCitation>
|
||
,
|
||
<bibRefCitation id="EF9015E4D23C0272FC72FC1052F530E2" author="Tannock GW & Wilson CM & Loach D & Cook GM & Eason J" box="[987,1015,996,1020]" pageId="51" pageNumber="2833" pagination="927 - 938" refId="ref61692" refString="56. Tannock GW, Wilson CM, Loach D, Cook GM, Eason J et al. Resource partitioning in relation to cohabitation of Lactobacillus species in the mouse forestomach. ISME J 2012; 6: 927 - 938." type="journal article" year="2012">56</bibRefCitation>
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||
,
|
||
<bibRefCitation id="EF9015E4D23C0272FBA8FC10552F30E2" author="Duar RM & Frese SA & Lin XB & Fernando SC & Burkey TE" box="[1025,1069,996,1020]" pageId="51" pageNumber="2833" refId="ref71495" refString="269. Duar RM, Frese SA, Lin XB, Fernando SC, Burkey TE et al. Experimental evaluation of host adaptation of Lactobacillus reuteri to different vertebrate species. Appl Environ Microbiol 2017; 83: e 00132 - 17." type="journal volume" year="2017">269</bibRefCitation>
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].
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||
<taxonomicName id="4C011396D23C0272FB94FC11559D30E2" box="[1085,1183,997,1020]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="51" pageNumber="2833" phylum="Firmicutes" rank="species" species="reuteri">
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||
<emphasis id="B975B407D23C0272FB94FC11559D30E2" box="[1085,1183,997,1020]" italics="true" pageId="51" pageNumber="2833">L. reuteri</emphasis>
|
||
</taxonomicName>
|
||
is divided in host-adapted lineages that are equivalent to the taxonomic rank of subspecies [
|
||
<bibRefCitation id="EF9015E4D23C0272FC3FFBD552C33727" author="Duar RM & Frese SA & Lin XB & Fernando SC & Burkey TE" box="[918,961,1057,1081]" pageId="51" pageNumber="2833" refId="ref71495" refString="269. Duar RM, Frese SA, Lin XB, Fernando SC, Burkey TE et al. Experimental evaluation of host adaptation of Lactobacillus reuteri to different vertebrate species. Appl Environ Microbiol 2017; 83: e 00132 - 17." type="journal volume" year="2017">269</bibRefCitation>
|
||
,
|
||
<bibRefCitation id="EF9015E4D23C0272FC62FBD552F73727" author="Frese SA & Benson AK & Tannock GW & Loach DM & Kim J" box="[971,1013,1057,1081]" pageId="51" pageNumber="2833" pagination="1001314" refId="ref71539" refString="270. Frese SA, Benson AK, Tannock GW, Loach DM, Kim J et al. The evolution of host specialization in the vertebrate gut symbiont Lactobacillus reuteri. PLoS Genet 2011; 7: e 1001314." type="journal article" year="2011">270</bibRefCitation>
|
||
] and differ in their ability to
|
||
<taxonomicName id="4C011396D23C0272FA82FBD554BE3727" box="[1323,1468,1057,1081]" form="biofilms" pageId="51" pageNumber="2833" rank="form">form biofilms</taxonomicName>
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||
in the mouse forestomach [
|
||
<bibRefCitation id="EF9015E4D23C0272FBC6FBB4559F3746" author="Frese SA & MacKenzie DA & Peterson DA & Schmaltz R & Fangman T" box="[1135,1181,1088,1112]" pageId="51" pageNumber="2833" pagination="1004057" refId="ref71580" refString="271. Frese SA, MacKenzie DA, Peterson DA, Schmaltz R, Fangman T et al. Molecular characterization of host-specific biofilm formation in a vertebrate gut symbiont. PLoS Genet 2013; 9: e 1004057." type="journal article" year="2013">271</bibRefCitation>
|
||
]. Few strains of
|
||
<taxonomicName id="4C011396D23C0272FAFCFBB554B83746" box="[1365,1466,1089,1112]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="51" pageNumber="2833" phylum="Firmicutes" rank="species" species="reuteri">
|
||
<emphasis id="B975B407D23C0272FAFCFBB554B83746" box="[1365,1466,1089,1112]" italics="true" pageId="51" pageNumber="2833">L. reuteri</emphasis>
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||
</taxonomicName>
|
||
produce the antimicrobial compound reutericyclin with a polyketide synthase, which is a unique ability among lactobacilli [
|
||
<bibRefCitation id="EF9015E4D23C0272FC20FB6852B537AA" author="Lin XB & Lohans CT & Duar R & Zheng J & Vederas JC" box="[905,951,1180,1204]" pageId="51" pageNumber="2833" pagination="2032 - 2041" refId="ref71620" refString="272. Lin XB, Lohans CT, Duar R, Zheng J, Vederas JC et al. Genetic determinants of reutericyclin biosynthesis in Lactobacillus reuteri. Appl Environ Microbiol 2015; 81: 2032 - 2041." type="journal article" year="2015">272</bibRefCitation>
|
||
]. The genome size of the type strain is 1.94 Mbp. The mol% G+C content of DNA is 38.6.
|
||
</paragraph>
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||
</subSubSection>
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||
<subSubSection id="C31B3B9ED23C0272FC95FB1C5424351B" pageId="51" pageNumber="2833" type="description">
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<paragraph id="8BBE6815D23C0272FC95FB1C54883643" blockId="51.[828,1469,1256,1373]" pageId="51" pageNumber="2833">
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Isolated as dominant members of the intestinal microbiota of rodents, birds, swine, and in other intestinal ecosystems; also occurs in cereal fermentations, particularly type II sourdoughs [
|
||
<bibRefCitation id="EF9015E4D23C0272FC3EFAB052B53642" author="Ganzle MG" box="[919,951,1348,1372]" pageId="51" pageNumber="2833" pagination="855 - 900" refId="ref61785" refString="58. Ganzle MG. Fermented Foods. In: Doyle MP, Diez Gonzalez F, Hill C (editors). Food Microbiol. Fundam. Front, 5 th ed. ASM Press; 2019. pp. 855 - 900." type="book chapter" year="2019">58</bibRefCitation>
|
||
]. Food isolates are of intestinal origin [
|
||
<bibRefCitation id="EF9015E4D23C0272FAF8FAB1547D3643" author="Zheng J & Zhao X & Lin XB & Ganzle M." box="[1361,1407,1349,1373]" pageId="51" pageNumber="2833" pagination="18234" refId="ref71659" refString="273. Zheng J, Zhao X, Lin XB, Ganzle M. Comparative genomics Lactobacillus reuteri from sourdough reveals adaptation of an intestinal symbiont to food fermentations. Sci Rep 2015; 5: 18234." type="journal article" year="2015">273</bibRefCitation>
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].
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||
</paragraph>
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||
<paragraph id="8BBE6815D23C0272FC95FA86544836B6" blockId="51.[828,1466,1393,1449]" pageId="51" pageNumber="2833">
|
||
Thetype strain of the species is F 275
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||
<superScript id="7C74C55DD23C0272FB14FA8555C53661" attach="left" box="[1213,1223,1393,1407]" fontSize="6" pageId="51" pageNumber="2833">T</superScript>
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= ATCC 23272
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<superScript id="7C74C55DD23C0272FAC3FA8554763661" attach="none" box="[1386,1396,1393,1407]" fontSize="6" pageId="51" pageNumber="2833">T</superScript>
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=DSM 20016
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<superScript id="7C74C55DD23C0272FCD5FA6452843680" attach="left" box="[892,902,1424,1438]" fontSize="6" pageId="51" pageNumber="2833">T</superScript>
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= JCM 1112
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<superScript id="7C74C55DD23C0272FBA5FA6455143680" attach="none" box="[1036,1046,1424,1438]" fontSize="6" pageId="51" pageNumber="2833">T</superScript>
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=LMG 9213
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<superScript id="7C74C55DD23C0272FB31FA6455A03680" attach="left" box="[1176,1186,1424,1438]" fontSize="6" pageId="51" pageNumber="2833">T</superScript>
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= LMG 13557
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||
<superScript id="7C74C55DD23C0272FA95FA6454463680" attach="none" box="[1340,1348,1424,1438]" fontSize="6" pageId="51" pageNumber="2833">T</superScript>
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.
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||
</paragraph>
|
||
<paragraph id="8BBE6815D23C0272FC95FA4B548536C9" blockId="51.[828,1415,1471,1495]" box="[828,1415,1471,1495]" pageId="51" pageNumber="2833">Genome sequence accession number: AZDD00000000.</paragraph>
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<paragraph id="8BBE6815D23C0272FC95FA185424351B" blockId="51.[828,1318,1516,1541]" box="[828,1318,1516,1541]" pageId="51" pageNumber="2833">
|
||
16S rRNA gene accession number:
|
||
<accessionNumber id="9452F5F6D23C0272FB18FA195420351B" box="[1201,1314,1517,1541]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/AP007281" pageId="51" pageNumber="2833">AP007281</accessionNumber>
|
||
.
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |