125 lines
8.8 KiB
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125 lines
8.8 KiB
XML
<document ID-DOI="10.1099/ijsem.0.004866" ID-ISSN="1466-5034" ID-PMC="PMC8489838" ID-PubMed="34214025" ID-Zenodo-Dep="6224106" approvalRequired="2" approvalRequired_for_taxonomicNames="2" checkinTime="1645466140710" checkinUser="felipe" docAuthor="Sefrji, Fatmah O., Michoud, Grégoire, Marasco, Ramona, Merlino, Giuseppe & Daffonchio, Daniele" docDate="2021" docId="03A37A7E3E22FF82460AD9D3FE04E968" docLanguage="en" docName="IntJSystEvolMicrobiol.71.7.004866.pdf" docOrigin="International Journal of Systematic and Evolutionary Microbiology (004866) 71 (7)" docSource="http://dx.doi.org/10.1099/ijsem.0.004866" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.1:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="1" docTitle="Mangrovivirga cuniculi Sefrji & Michoud & Marasco & Merlino & Daffonchio 2021, SP. NOV." docType="treatment" docVersion="5" lastPageNumber="9" masterDocId="FF9A02063E2AFF8A4673D818FF85EC05" masterDocTitle="MaNgROVIVIRga CUNICULI gen. nov., sp. nov., a moderately halophilic bacterium isolated from bioturbated Red Sea mangrove sediment, and proposal of the novel family MaNgROVIVIRgaCeae fam. nov." masterLastPageNumber="11" masterPageNumber="1" pageNumber="9" updateTime="1668130809103" updateUser="ExternalLinkService">
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<mods:title>MaNgROVIVIRga CUNICULI gen. nov., sp. nov., a moderately halophilic bacterium isolated from bioturbated Red Sea mangrove sediment, and proposal of the novel family MaNgROVIVIRgaCeae fam. nov.</mods:title>
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<mods:roleTerm>Author</mods:roleTerm>
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<mods:namePart>Sefrji, Fatmah O.</mods:namePart>
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<mods:roleTerm>Author</mods:roleTerm>
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<mods:namePart>Michoud, Grégoire</mods:namePart>
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<mods:roleTerm>Author</mods:roleTerm>
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<mods:namePart>Marasco, Ramona</mods:namePart>
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<mods:name type="personal">
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<mods:roleTerm>Author</mods:roleTerm>
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<mods:namePart>Merlino, Giuseppe</mods:namePart>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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<mods:namePart>Daffonchio, Daniele</mods:namePart>
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<mods:title>International Journal of Systematic and Evolutionary Microbiology</mods:title>
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<mods:part>
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<mods:date>2021</mods:date>
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<mods:detail type="series">
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<mods:title>004866</mods:title>
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<mods:detail type="pubDate">
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<mods:number>2021-07-02</mods:number>
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<mods:detail type="volume">
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<mods:number>71</mods:number>
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<mods:detail type="issue">
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<mods:number>7</mods:number>
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<mods:url>http://dx.doi.org/10.1099/ijsem.0.004866</mods:url>
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<mods:classification>journal article</mods:classification>
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<mods:identifier type="DOI">10.1099/ijsem.0.004866</mods:identifier>
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<mods:identifier type="ISSN">1466-5034</mods:identifier>
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<mods:identifier type="PMC">PMC8489838</mods:identifier>
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<mods:identifier type="PubMed">34214025</mods:identifier>
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<heading allCaps="true" bold="true" fontSize="12" level="2" pageId="8" pageNumber="9" reason="3">
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<emphasis bold="true" pageId="8" pageNumber="9">
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DESCRIPTION OF
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<taxonomicName authority="Sefrji & Michoud & Marasco & Merlino & Daffonchio, 2021" authorityName="Sefrji & Michoud & Marasco & Merlino & Daffonchio" authorityYear="2021" box="[370,746,459,488]" class="Cytophagia" family="Flammeovirgaceae" genus="Mangrovivirga" kingdom="Bacteria" order="Cytophagales" pageId="8" pageNumber="9" phylum="Bacteroidetes" rank="species" species="cuniculi" status="sp. nov.">
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<emphasis bold="true" box="[370,746,459,488]" italics="true" pageId="8" pageNumber="9">MANGROVIVIRGA CUNICULI</emphasis>
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<taxonomicNameLabel box="[121,237,496,525]" pageId="8" pageNumber="9" rank="species">SP. NOV.</taxonomicNameLabel>
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</paragraph>
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<subSubSection pageId="8" pageNumber="9" type="etymology">
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<paragraph blockId="8.[115,762,459,1389]" pageId="8" pageNumber="9">
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<taxonomicName authorityName="Sefrji & Michoud & Marasco & Merlino & Daffonchio" authorityYear="2021" box="[121,371,538,562]" class="Cytophagia" family="Flammeovirgaceae" genus="Mangrovivirga" kingdom="Bacteria" order="Cytophagales" pageId="8" pageNumber="9" phylum="Bacteroidetes" rank="species" species="cuniculi">
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<emphasis box="[121,371,538,562]" italics="true" pageId="8" pageNumber="9">Mangrovivirga cuniculi</emphasis>
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</taxonomicName>
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(cu.ni.cu′ li. L. gen. n.
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<taxonomicName authorityName="Sefrji & Michoud & Marasco & Merlino & Daffonchio" authorityYear="2021" box="[624,708,538,562]" class="Cytophagia" family="Flammeovirgaceae" genus="Mangrovivirga" kingdom="Bacteria" order="Cytophagales" pageId="8" pageNumber="9" phylum="Bacteroidetes" rank="species" species="cuniculi">
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<emphasis box="[624,708,538,562]" italics="true" pageId="8" pageNumber="9">cuniculi</emphasis>
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</taxonomicName>
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of a burrow, named because the
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<typeStatus box="[429,475,569,593]" pageId="8" pageNumber="9">type</typeStatus>
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species was isolated from a crab burrow).
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</paragraph>
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<subSubSection pageId="8" pageNumber="9" type="description">
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<paragraph blockId="8.[115,762,459,1389]" pageId="8" pageNumber="9">
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The cell morphology and chemotaxonomic characteristics are given in the genus description. Cells are 0.3–0.5 µm wide and 1–1.2µm long. Its colonies are circular with a diameter of
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and feature regular edges, a smooth and shiny surface, and an orange colour caused by the production of orange carotenoids. The permissive conditions for growth are a temperature of 20–40 °C (optimum, 37°C), pH 6–10 (optimum, pH 8) and 3%–11% NaCl for salinity (optimum, 7%–9% NaCl). The carbon sources used for growth are pectin, 2-deoxy-D-ribose,Dribose, 5-keto-D-gluconic acid,L-ornithine, dihydroxyacetone, thymidine, uridine and adenosine. The genome harbours genes responsible for protection against oxidative, osmotic and salinity stresses, and includes genes encoding proteins that produce osmoprotectants and carotenoids. The cells are negative for amylase, protease, lipase, cellulase, indole, siderophore production and phosphate solubilization, and are positive for auxin (IAA) and ammonia production. The strain is unable to reduce nitrate to nitrite.
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</paragraph>
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<paragraph blockId="8.[115,762,459,1389]" pageId="8" pageNumber="9">
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<materialsCitation collectionCode="R" country="Saudi Arabia" location="Saudi Arabia" pageId="8" pageNumber="9" specimenCode="R1DC9T" specimenCount="1" typeStatus="holotype">
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The type strain,
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<specimenCode box="[279,366,1211,1236]" pageId="8" pageNumber="9">
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R1DC9
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<superScript attach="left" box="[357,366,1211,1225]" fontSize="6" pageId="8" pageNumber="9">T</superScript>
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</specimenCode>
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(=KCTC 72349
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<superScript attach="none" box="[526,535,1211,1225]" fontSize="6" pageId="8" pageNumber="9">T</superScript>
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=JCM 33609
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<superScript attach="none" box="[666,675,1211,1225]" fontSize="6" pageId="8" pageNumber="9">T</superScript>
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=NCCB 100698
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<superScript attach="none" box="[198,208,1241,1255]" fontSize="6" pageId="8" pageNumber="9">T</superScript>
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), was isolated from bioturbated mangrove sediment at the Ibn Sina Field Research Station and Nature Conservation Area in KAUST,
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<collectingCountry box="[350,490,1304,1328]" name="Saudi Arabia" pageId="8" pageNumber="9">Saudi Arabia</collectingCountry>
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. The genomic DNA G+C content and genome size of the type strain are 63.1 mol% and 4661901 bp, respectively.
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</materialsCitation>
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</paragraph>
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</subSubSection>
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</treatment>
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