169 lines
15 KiB
XML
169 lines
15 KiB
XML
<document id="4641784C19F30EA838BC2A9FCCA20BE1" ID-CLB-Dataset="20542" ID-DOI="10.1099/ijsem.0.003307" ID-GBIF-Dataset="e1043156-7722-4765-a6ed-aff425679aa9" ID-ISSN="1466-5034" ID-Zenodo-Dep="6223822" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="existingObjects,plazi" IM.taxonomicNames_approvedBy="felipe" checkinTime="1645465746849" checkinUser="felipe" docAuthor="Intra, Bungonsiri, Euanorasetr, Jirayut, Také, Akira, Inahashi, Yuki, Mori, Mihoko, Panbangred, Watanalai & Matsumoto, Atsuko" docDate="2019" docId="42543523FFA92A18FCC8FCA74C8E8D88" docLanguage="en" docName="IntJSystEvolMicrobiol.69.5.1299-1305.pdf" docOrigin="International Journal of Systematic and Evolutionary Microbiology 69 (5)" docSource="http://dx.doi.org/10.1099/ijsem.0.003307" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.3:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="3" docTitle="Saccharopolyspora rhizosphaerae Intra & Euanorasetr & Také & Inahashi & Mori & Panbangred & Matsumoto 2019, SP. NOV." docType="treatment" docVersion="8" lastPageNumber="1303" masterDocId="BE6D4D5BFFAD2A1DFFF3FFCE4E5A8D65" masterDocTitle="Saccharopolyspora rhizosphaerae sp. nov., an actinomycete isolated from rhizosphere soil in Thailand" masterLastPageNumber="1305" masterPageNumber="1299" pageNumber="1303" updateTime="1699315834126" updateUser="ExternalLinkService">
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<mods:titleInfo id="34D31683467FBE10E0E89CB33E2CA5FB">
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<mods:title id="604424DBFC631D908C3779F79B2FB5A6">Saccharopolyspora rhizosphaerae sp. nov., an actinomycete isolated from rhizosphere soil in Thailand</mods:title>
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<mods:namePart id="9F1D4D2775C5B1F12AD4E717EECE1A79">Intra, Bungonsiri</mods:namePart>
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<mods:roleTerm id="6DBBD12D415B699CB70D8F4D508805AC">Author</mods:roleTerm>
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<mods:namePart id="BDB2415D0B50DD16570C6A52A8E5E6F4">Euanorasetr, Jirayut</mods:namePart>
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<mods:roleTerm id="9992BAA8FB6D2FE800AEA65FA3A954B4">Author</mods:roleTerm>
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<mods:namePart id="D99F192DD76E30B99ADF36C061493DD8">Také, Akira</mods:namePart>
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</mods:name>
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<mods:name id="587955C1B9F8521D05EADF94E17FB403" type="personal">
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<mods:role id="BB5411E32CD3F05361691BDD3597CAF4">
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<mods:roleTerm id="B71065222FD5D7E5E708F4CC1638108A">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="F0F5E6100091CE5C3A89E9D8F64D26B0">Inahashi, Yuki</mods:namePart>
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</mods:name>
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<mods:name id="5134E38D0F9D96587D016FB9681F1735" type="personal">
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<mods:role id="68A55ECE75C727F31AEB0241BA257F2D">
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<mods:roleTerm id="799147B673C749A2DEFF8A482D31168C">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="29785659874450FC6DE7062CE9F12819">Mori, Mihoko</mods:namePart>
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</mods:name>
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<mods:name id="E02A9DBF683E9608F132F896E7F244FF" type="personal">
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<mods:roleTerm id="267F277A54489DEA978952F464C8776A">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="E0E4ED52853FD3B0F2D553214014CF13">Panbangred, Watanalai</mods:namePart>
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</mods:name>
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<mods:roleTerm id="505483531DFEDEAF22CE26DA635F9435">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="062E50575D76955B7893A1AD5DA8A344">Matsumoto, Atsuko</mods:namePart>
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<mods:title id="3BC528EF5D2EB9536426760C68E10843">International Journal of Systematic and Evolutionary Microbiology</mods:title>
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</mods:titleInfo>
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<mods:part id="06BF2E2B18D8E3FB113CE66E91D30B93">
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<mods:date id="C1DACD41124293F26F5D3EC1F7BADA8C">2019</mods:date>
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<mods:number id="42D51BE64E0BA50A6DBC167EAA6A8BE7">2019-05-01</mods:number>
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<mods:detail id="F7AE45EC8A1221757BEC4D9C9C8F735D" type="volume">
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<mods:number id="31DE9ED53C4EDFDC51509176E3232A80">69</mods:number>
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<mods:number id="2F8A556679277ABA97087EFD6F96218A">5</mods:number>
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<mods:start id="BF8697D3D04E856A7C3DCCA52C0DC909">1299</mods:start>
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<mods:url id="45AC4FAADAF5F89BE472C8BDA72087DC">http://dx.doi.org/10.1099/ijsem.0.003307</mods:url>
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<mods:classification id="0028FB13F6780E70EBCFA9D07C14EE66">journal article</mods:classification>
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<mods:identifier id="392ECC5264A688B7D02C356FF23BDAA9" type="CLB-Dataset">20542</mods:identifier>
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<mods:identifier id="62164D28492FC7CDF4971E1BA5952A99" type="DOI">10.1099/ijsem.0.003307</mods:identifier>
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<mods:identifier id="54D053B07A444DB44C56A37C04178049" type="GBIF-Dataset">e1043156-7722-4765-a6ed-aff425679aa9</mods:identifier>
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<mods:identifier id="961D44F2D4851B111A8FAB69B3580178" type="ISSN">1466-5034</mods:identifier>
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<mods:identifier id="97046100EFC0A5EAD6EC2A3709E200B1" type="Zenodo-Dep">6223822</mods:identifier>
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<treatment id="42543523FFA92A18FCC8FCA74C8E8D88" ID-DOI="http://doi.org/10.5281/zenodo.6314471" ID-GBIF-Taxon="193437767" ID-Zenodo-Dep="6314471" LSID="urn:lsid:plazi:treatment:42543523FFA92A18FCC8FCA74C8E8D88" httpUri="http://treatment.plazi.org/id/42543523FFA92A18FCC8FCA74C8E8D88" lastPageId="5" lastPageNumber="1303" pageId="4" pageNumber="1303">
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<subSubSection id="82E7D7BEFFA92A19FCC8FCA74AFD8ECE" pageId="4" pageNumber="1303" type="nomenclature">
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<paragraph id="CA428435FFA92A19FCC8FCA74AFD8ECE" blockId="4.[827,1466,873,1952]" pageId="4" pageNumber="1303">
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<heading id="910A3359FFA92A19FCC8FCA74AFD8ECE" allCaps="true" bold="true" fontSize="12" level="2" pageId="4" pageNumber="1303" reason="3">
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<emphasis id="F8895827FFA92A19FCC8FCA74AFD8ECE" bold="true" pageId="4" pageNumber="1303">
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DESCRIPTION OF
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<taxonomicName id="0DFDFFB6FFA92A19FBC3FCA74A798ECE" authority="Intra & Euanorasetr & Také & Inahashi & Mori & Panbangred & Matsumoto, 2019" authorityName="Intra & Euanorasetr & Také & Inahashi & Mori & Panbangred & Matsumoto" authorityYear="2019" class="Actinobacteridae" family="Pseudonocardiaceae" genus="Saccharopolyspora" kingdom="Bacteria" order="Actinomycetales" pageId="4" pageNumber="1303" phylum="Actinobacteria" rank="species" species="rhizosphaerae" status="sp. nov.">
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<emphasis id="F8895827FFA92A19FBC3FCA74A798ECE" bold="true" italics="true" pageId="4" pageNumber="1303">SACCHAROPOLYSPORA RHIZOSPHAERAE</emphasis>
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</taxonomicName>
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<taxonomicNameLabel id="E3BAE55CFFA92A19FBDFFC404AFD8ECE" box="[1068,1191,910,939]" pageId="4" pageNumber="1303" rank="species">SP. NOV.</taxonomicNameLabel>
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</emphasis>
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</heading>
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</paragraph>
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</subSubSection>
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||
<subSubSection id="82E7D7BEFFA92A19FCC8FC744A668975" pageId="4" pageNumber="1303" type="etymology">
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<paragraph id="CA428435FFA92A19FCC8FC744A668975" blockId="4.[827,1466,873,1952]" pageId="4" pageNumber="1303">
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<taxonomicName id="0DFDFFB6FFA92A19FCC8FC744AC48EB7" authorityName="Intra & Euanorasetr & Také & Inahashi & Mori & Panbangred & Matsumoto" authorityYear="2019" box="[827,1182,954,978]" class="Actinobacteridae" family="Pseudonocardiaceae" genus="Saccharopolyspora" kingdom="Bacteria" order="Actinomycetales" pageId="4" pageNumber="1303" phylum="Actinobacteria" rank="species" species="rhizosphaerae">
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<emphasis id="F8895827FFA92A19FCC8FC744AC48EB7" box="[827,1182,954,978]" italics="true" pageId="4" pageNumber="1303">Saccharopolyspora rhizosphaerae</emphasis>
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</taxonomicName>
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(rhi.zo.sphae′ rae. Gr. n.
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<emphasis id="F8895827FFA92A19FCC8FC174D2B8E94" box="[827,881,985,1009]" italics="true" pageId="4" pageNumber="1303">rhiza</emphasis>
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root; L. n.
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<emphasis id="F8895827FFA92A19FC02FC174A188E94" box="[1009,1090,985,1009]" italics="true" pageId="4" pageNumber="1303">sphaera</emphasis>
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a ball,
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<emphasis id="F8895827FFA92A19FB64FC174A838E94" box="[1175,1241,985,1009]" italics="true" pageId="4" pageNumber="1303">sphere</emphasis>
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; N.L. gen. n.
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<taxonomicName id="0DFDFFB6FFA92A19FA82FC174DD48975" authorityName="Intra & Euanorasetr & Také & Inahashi & Mori & Panbangred & Matsumoto" authorityYear="2019" class="Actinobacteridae" family="Pseudonocardiaceae" genus="Saccharopolyspora" kingdom="Bacteria" order="Actinomycetales" pageId="4" pageNumber="1303" phylum="Actinobacteria" rank="species" species="rhizosphaerae">
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<emphasis id="F8895827FFA92A19FA82FC174DD48975" italics="true" pageId="4" pageNumber="1303">rhizosphaerae</emphasis>
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</taxonomicName>
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of rhizosphere).
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</paragraph>
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</subSubSection>
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<subSubSection id="82E7D7BEFFA92A19FCC8FBE94B298AF8" pageId="4" pageNumber="1303" type="description">
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<paragraph id="CA428435FFA92A19FCC8FBE94B298AF8" blockId="4.[827,1466,873,1952]" pageId="4" pageNumber="1303">
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Aerobic, Gram-positive, catalase-positive and oxidasepositive. The colonies are pale yellow in colour with white aerial mycelia that produce spherical-shaped, warty and non-motile spores. Soluble pigments are not produced. Growth of the
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<typeStatus id="15463A97FFA92A19FBC9FB694A3D89DA" box="[1082,1127,1191,1215]" pageId="4" pageNumber="1303">type</typeStatus>
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strain is observed at temperatures of between 18 and 37
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<superScript id="3D88297DFFA92A19FB76FB0B4AD689AA" attach="right" box="[1157,1164,1221,1231]" fontSize="6" pageId="4" pageNumber="1303">Ǫ</superScript>
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C (optimum, 22–36
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<superScript id="3D88297DFFA92A19FA83FB0B4B2D89AA" attach="right" box="[1392,1399,1221,1231]" fontSize="6" pageId="4" pageNumber="1303">Ǫ</superScript>
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C), at pH 6–11 and in the presence of up to 14 % NaCl (w/v). The organism can utilise D- arabinose, fructose, glucose, mannitol,
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<emphasis id="F8895827FFA92A19FC41FAE94D85885B" box="[946,991,1319,1342]" italics="true" pageId="4" pageNumber="1303">myo</emphasis>
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-inositol,
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<subScript id="56798670FFA92A19FBBEFAE24A05885B" attach="right" box="[1101,1119,1318,1342]" fontSize="7" pageId="4" pageNumber="1303">L-</subScript>
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rhamnose, sucrose and xylose as the sole carbon source, but cannot use melibiose and raffinose. Acid is produced from glucose, L- rhamnose, sucrose and xylose.
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<subScript id="56798670FFA92A19FBDDFA424A1A88FB" attach="right" box="[1070,1088,1414,1438]" fontSize="7" pageId="4" pageNumber="1303">L-</subScript>
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Alanine,
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<subScript id="56798670FFA92A19FB5EFA424AE588FB" attach="right" box="[1197,1215,1414,1438]" fontSize="7" pageId="4" pageNumber="1303">L-</subScript>
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histidine,
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<subScript id="56798670FFA92A19FAC6FA424B1D88FB" attach="right" box="[1333,1351,1414,1438]" fontSize="7" pageId="4" pageNumber="1303">L-</subScript>
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phenylalanine, L- proline, L- serine, L- tyrosine, L- valine and methionine can be utilised as the sole nitrogen source, but adenine, glycine and L- glutamic acid are not utilised. The strain is positive for hydrogen sulphide production, gelatin liquefaction, casein hydrolysis, milk peptonisation and starch hydrolysis, but negative for melanin production and milk coagulation. The cell wall contains
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<emphasis id="F8895827FFA92A19FA88F9A84BEA8B18" box="[1403,1456,1638,1661]" italics="true" pageId="4" pageNumber="1303">meso</emphasis>
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- DAP. Arabinose and galactose are found in whole-cell hydrolysates. The major
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<typeStatus id="15463A97FFA92A19FBA5F9684AD78BDB" box="[1110,1165,1702,1726]" pageId="4" pageNumber="1303">types</typeStatus>
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of cellular fatty acids are iso-C
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<subScript id="56798670FFA92A19FC87F9014DC68B85" attach="left" box="[884,924,1743,1760]" fontSize="7" pageId="4" pageNumber="1303">16: 0</subScript>
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, anteiso-C
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<subScript id="56798670FFA92A19FBE5F9014A648B85" attach="left" box="[1046,1086,1743,1760]" fontSize="7" pageId="4" pageNumber="1303">17: 0</subScript>
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, iso-C
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<subScript id="56798670FFA92A19FB78F9014AE98B85" attach="left" box="[1163,1203,1743,1760]" fontSize="7" pageId="4" pageNumber="1303">15: 0</subScript>
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, and 10-methyl C. The muramic acid is acetyl
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<typeStatus id="15463A97FFA92A19FB75F9284AE98B9B" box="[1158,1203,1766,1790]" pageId="4" pageNumber="1303">type</typeStatus>
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and no mycolic acids are detected. The polar lipids are diphosphatidylglycerol, phosphatidylcholine, phosphatidylethanolamine, phosphatidylglycerol, phosphatidylethanolamine-containing hydroxylated fatty acids and an unknown phospholipid. MK-9(H
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<subScript id="56798670FFA92A19FC64F8414DFB8AC5" attach="left" box="[919,929,1935,1952]" fontSize="7" pageId="4" pageNumber="1303">4</subScript>
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) is the predominant menaquinone.
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</paragraph>
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</subSubSection>
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<paragraph id="CA428435FFA92A19FA78F9014BEE8B85" blockId="4.[827,1466,873,1952]" box="[1419,1460,1743,1760]" pageId="4" pageNumber="1303">
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<subScript id="56798670FFA92A19FA78F9014BEE8B85" attach="left" box="[1419,1460,1743,1760]" fontSize="7" pageId="4" pageNumber="1303">17: 0</subScript>
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</paragraph>
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<subSubSection id="82E7D7BEFFA92A18FA7CF84B4C8E8D88" lastPageId="5" lastPageNumber="1304" pageId="4" pageNumber="1303" type="materials_examined">
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<paragraph id="CA428435FFA92A18FA7CF84B4C8E8D88" blockId="4.[827,1466,873,1952]" lastBlockId="5.[121,758,182,237]" lastPageId="5" lastPageNumber="1304" pageId="4" pageNumber="1303">
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<materialsCitation id="7A958E68FFA92A18FA7CF84B4C8E8D88" ID-GBIF-Occurrence="3470288301" collectionCode="H" lastPageId="5" lastPageNumber="1304" pageId="4" pageNumber="1303" specimenCode="H219T" specimenCount="1" typeStatus="holotype">
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The G+C content of the genomic DNA is 70.6 mol%. The
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<typeStatus id="15463A97FFA82A18FF8AFF1B4EFC8D88" box="[121,166,213,237]" pageId="5" pageNumber="1304">type</typeStatus>
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strain is
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<specimenCode id="9A5B2C4EFFA82A18FEE6FF1B4F068D85" box="[277,348,207,237]" pageId="5" pageNumber="1304">
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H219
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<superScript id="3D88297DFFA82A18FEA3FF014F068D85" attach="left" box="[336,348,207,224]" fontSize="7" pageId="5" pageNumber="1304">T</superScript>
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</specimenCode>
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(=TBRC 8564
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<superScript id="3D88297DFFA82A18FDF3FF014C568D85" attach="none" box="[512,524,207,224]" fontSize="7" pageId="5" pageNumber="1304">T</superScript>
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=NBRC 113388
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<superScript id="3D88297DFFA82A18FD4BFF014C9E8D85" attach="none" box="[696,708,207,224]" fontSize="7" pageId="5" pageNumber="1304">T</superScript>
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).
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</materialsCitation>
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |