treatments-xml/data/8A/5D/BB/8A5DBB36FF9C293CFC0DFA56FCA1FDAC.xml
2024-06-21 12:43:10 +02:00

267 lines
20 KiB
XML
Raw Blame History

This file contains ambiguous Unicode characters

This file contains Unicode characters that might be confused with other characters. If you think that this is intentional, you can safely ignore this warning. Use the Escape button to reveal them.

<document ID-DOI="10.5252/cryptogamie-mycologie2020v41a3" ID-ISSN="1776-100X" ID-Zenodo-Dep="7815042" checkinTime="1681175622560" checkinUser="felipe" docAuthor="Dayarathne, Monika C., Wanasinghe, Dhanushka N., Devadatha, B., Abeywickrama, Pranami, G, E. B., Jones, areth, Chomnunti, Putarak, Sarma, V. V., Hyde, Kevin D., Lumyong, Saisamorn, C., Eric H. &amp; Mckenzie" docDate="2020" docId="8A5DBB36FF9C293CFC0DFA56FCA1FDAC" docLanguage="en" docName="CryptogamieMycologie.41.3.21-67.pdf" docOrigin="Cryptogamie, Mycologie 20 (3)" docSource="http://dx.doi.org/10.5252/cryptogamie-mycologie2020v41a3" docStyle="DocumentStyle:81F49AB8619EB7E5D11A6328441E2653:CryptogamieMycologie.2019-.journal_article" docStyleId="81F49AB8619EB7E5D11A6328441E2653" docStyleName="CryptogamieMycologie.2019-.journal_article" docTitle="Halodiatrype Dayarathne &amp; K. D. Hyde 2016" docType="treatment" docVersion="2" lastPageNumber="54" masterDocId="7664C34EFFBD291FFF95FFE4FFA0FFBD" masterDocTitle="Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne &amp; K. D. Hyde, gen. nov." masterLastPageNumber="67" masterPageNumber="21" pageNumber="52" updateTime="1681176203169" updateUser="ExternalLinkService" zenodo-license-document="CC0-1.0" zenodo-license-figures="CC0-1.0" zenodo-license-treatments="UNSPECIFIED">
<mods:mods xmlns:mods="http://www.loc.gov/mods/v3">
<mods:titleInfo>
<mods:title>Modern taxonomic approaches to identifying diatrypaceous fungi from marine habitats, with a novel genus Halocryptovalsa Dayarathne &amp; K. D. Hyde, gen. nov.</mods:title>
</mods:titleInfo>
<mods:name type="personal">
<mods:role>
<mods:roleTerm>Author</mods:roleTerm>
</mods:role>
<mods:namePart>Dayarathne, Monika C.</mods:namePart>
<mods:affiliation>Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100 (Thailand) World Agroforestry Centre East and Central Asia Office, 132 Lanhei Road, Kunming 650201 (China) Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan (China) monidaya 40 @ gmail. com (corresponding author)</mods:affiliation>
</mods:name>
<mods:name type="personal">
<mods:role>
<mods:roleTerm>Author</mods:roleTerm>
</mods:role>
<mods:namePart>Wanasinghe, Dhanushka N.</mods:namePart>
<mods:affiliation>Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100 (Thailand) World Agroforestry Centre East and Central Asia Office, 132 Lanhei Road, Kunming 650201 (China)</mods:affiliation>
</mods:name>
<mods:name type="personal">
<mods:role>
<mods:roleTerm>Author</mods:roleTerm>
</mods:role>
<mods:namePart>Devadatha, B.</mods:namePart>
<mods:affiliation>Biotechnology, School of Life Sciences, Pondicherry University, Kalapet, Pondicherry 605014 (India)</mods:affiliation>
</mods:name>
<mods:name type="personal">
<mods:role>
<mods:roleTerm>Author</mods:roleTerm>
</mods:role>
<mods:namePart>Abeywickrama, Pranami</mods:namePart>
<mods:affiliation>Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100 (Thailand) of Plant and Environment Protection, Beijing Academy of Agriculture and Forestry Sciences (China)</mods:affiliation>
</mods:name>
<mods:name type="personal">
<mods:role>
<mods:roleTerm>Author</mods:roleTerm>
</mods:role>
<mods:namePart>G, E. B.</mods:namePart>
</mods:name>
<mods:name type="personal">
<mods:role>
<mods:roleTerm>Author</mods:roleTerm>
</mods:role>
<mods:namePart>Jones, areth</mods:namePart>
</mods:name>
<mods:name type="personal">
<mods:role>
<mods:roleTerm>Author</mods:roleTerm>
</mods:role>
<mods:namePart>Chomnunti, Putarak</mods:namePart>
<mods:affiliation>Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100 (Thailand)</mods:affiliation>
</mods:name>
<mods:name type="personal">
<mods:role>
<mods:roleTerm>Author</mods:roleTerm>
</mods:role>
<mods:namePart>Sarma, V. V.</mods:namePart>
<mods:affiliation>Biotechnology, School of Life Sciences, Pondicherry University, Kalapet, Pondicherry 605014 (India)</mods:affiliation>
</mods:name>
<mods:name type="personal">
<mods:role>
<mods:roleTerm>Author</mods:roleTerm>
</mods:role>
<mods:namePart>Hyde, Kevin D.</mods:namePart>
<mods:affiliation>Center of Excellence in Fungal Research, Mae Fah Luang University, Chiang Rai 57100 (Thailand) World Agroforestry Centre East and Central Asia Office, 132 Lanhei Road, Kunming 650201 (China) Laboratory for Plant Biodiversity and Biogeography of East Asia (KLPB), Kunming Institute of Botany, Chinese Academy of Science, Kunming 650201, Yunnan (China)</mods:affiliation>
</mods:name>
<mods:name type="personal">
<mods:role>
<mods:roleTerm>Author</mods:roleTerm>
</mods:role>
<mods:namePart>Lumyong, Saisamorn</mods:namePart>
<mods:affiliation>Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai 50200 (Thailand)</mods:affiliation>
</mods:name>
<mods:name type="personal">
<mods:role>
<mods:roleTerm>Author</mods:roleTerm>
</mods:role>
<mods:namePart>C., Eric H.</mods:namePart>
<mods:affiliation>Department of Biology, Faculty of Science, Chiang Mai University, Chiang Mai Research New Zealand, Private Bag 92170, Auckland Mail Centre, Auckland 1142 mckenziee @ landcareresearch. co. nz (corresponding</mods:affiliation>
</mods:name>
<mods:name type="personal">
<mods:role>
<mods:roleTerm>Author</mods:roleTerm>
</mods:role>
<mods:namePart>Mckenzie</mods:namePart>
<mods:affiliation>Thailand) (New Zealand) author)</mods:affiliation>
</mods:name>
<mods:typeOfResource>text</mods:typeOfResource>
<mods:relatedItem type="host">
<mods:titleInfo>
<mods:title>Cryptogamie, Mycologie</mods:title>
</mods:titleInfo>
<mods:part>
<mods:date>2020</mods:date>
<mods:detail type="pubDate">
<mods:number>2020-03-27</mods:number>
</mods:detail>
<mods:detail type="volume">
<mods:number>20</mods:number>
</mods:detail>
<mods:detail type="issue">
<mods:number>3</mods:number>
</mods:detail>
<mods:extent unit="page">
<mods:start>21</mods:start>
<mods:end>67</mods:end>
</mods:extent>
</mods:part>
</mods:relatedItem>
<mods:location>
<mods:url>http://dx.doi.org/10.5252/cryptogamie-mycologie2020v41a3</mods:url>
</mods:location>
<mods:classification>journal article</mods:classification>
<mods:identifier type="DOI">10.5252/cryptogamie-mycologie2020v41a3</mods:identifier>
<mods:identifier type="ISSN">1776-100X</mods:identifier>
<mods:identifier type="Zenodo-Dep">7815042</mods:identifier>
</mods:mods>
<treatment ID-DOI="http://doi.org/10.5281/zenodo.7815111" ID-Zenodo-Dep="7815111" LSID="urn:lsid:plazi:treatment:8A5DBB36FF9C293CFC0DFA56FCA1FDAC" httpUri="http://treatment.plazi.org/id/8A5DBB36FF9C293CFC0DFA56FCA1FDAC" lastPageId="35" lastPageNumber="54" pageId="33" pageNumber="52">
<subSubSection pageId="33" pageNumber="52" type="nomenclature">
<paragraph blockId="33.[920,1348,1458,1485]" box="[920,1348,1458,1485]" pageId="33" pageNumber="52">
<heading box="[920,1348,1458,1485]" centered="true" fontSize="11" level="2" pageId="33" pageNumber="52" reason="4">
<taxonomicName ID-CoL="4SW4" ID-ENA="2039702" authority="Dayarathne &amp; K. D. Hyde" authorityName="Dayarathne &amp; K. D. Hyde" authorityYear="2016" box="[920,1348,1458,1485]" class="Sordariomycetes" family="Diatrypaceae" genus="Halodiatrype" kingdom="Fungi" order="Xylariales" pageId="33" pageNumber="52" phylum="Ascomycota" rank="genus">
<emphasis bold="true" box="[920,1063,1458,1485]" italics="true" pageId="33" pageNumber="52">Halodiatrype</emphasis>
Dayarathne &amp; K.D.Hyde
</taxonomicName>
</heading>
</paragraph>
<paragraph blockId="33.[835,1171,1516,1540]" box="[835,1171,1516,1540]" pageId="33" pageNumber="52">
<bibCitation box="[835,1167,1516,1540]" issue="5" journal="Mycosphere" page="612" pageId="33" pageNumber="52" score="9.729594737742866" volume="7" year="2016">
<emphasis box="[835,940,1516,1540]" italics="true" pageId="33" pageNumber="52">Mycosphere</emphasis>
7 (5): 612-627 (2016)
</bibCitation>
.
</paragraph>
</subSubSection>
<subSubSection pageId="33" pageNumber="52" type="materials_examined">
<paragraph blockId="33.[812,1455,1565,1616]" pageId="33" pageNumber="52">
<typeStatus box="[813,861,1565,1588]" pageId="33" pageNumber="52">TYPE</typeStatus>
SPECIES. —
<treatmentCitation author="Dayarathne &amp; K. D. Hyde" issue="5" journal="Mycosphere" page="612" pageId="33" pageNumber="52" score="9.729594737742866" volume="7" year="2016">
<taxonomicName ID-CoL="3JF73" authority="Dayarathne &amp; K. D. Hyde" authorityName="Dayarathne &amp; K. D. Hyde" box="[980,1451,1565,1589]" class="Sordariomycetes" family="Diatrypaceae" genus="Halodiatrype" kingdom="Fungi" order="Xylariales" pageId="33" pageNumber="52" phylum="Ascomycota" rank="species" species="salinicola">
<emphasis box="[980,1195,1565,1589]" italics="true" pageId="33" pageNumber="52">Halodiatrype salinicola</emphasis>
Dayarathne &amp; K.D.Hyde
</taxonomicName>
, in
<bibCitation box="[839,1170,1591,1616]" issue="5" journal="Mycosphere" page="612" pageId="33" pageNumber="52" score="9.729594737742866" volume="7" year="2016">
<emphasis box="[839,944,1591,1615]" italics="true" pageId="33" pageNumber="52">Mycosphere</emphasis>
7 (5): 612-627 (2016)
</bibCitation>
</treatmentCitation>
.
</paragraph>
</subSubSection>
<subSubSection lastPageId="35" lastPageNumber="54" pageId="33" pageNumber="52" type="description">
<paragraph blockId="33.[813,957,1651,1677]" box="[813,957,1651,1677]" pageId="33" pageNumber="52">
<heading box="[813,957,1651,1677]" fontSize="9" level="3" pageId="33" pageNumber="52" reason="5">DESCRIPTION</heading>
</paragraph>
<paragraph blockId="33.[813,1127,1682,1741]" box="[813,954,1682,1708]" pageId="33" pageNumber="52">
<heading box="[813,954,1682,1708]" fontSize="11" level="3" pageId="33" pageNumber="52" reason="9">
<emphasis box="[813,954,1682,1708]" italics="true" pageId="33" pageNumber="52">Sexual morph</emphasis>
</heading>
</paragraph>
<paragraph blockId="33.[813,1127,1682,1741]" box="[813,1127,1714,1741]" pageId="33" pageNumber="52">
See
<bibRefCitation author="DAYARATHNE M. C. &amp; HYDE K. D. &amp; GHE I. S. &amp; ANUN C. &amp; JONES E. B." box="[855,1120,1714,1741]" pageId="33" pageNumber="52" pagination="612 - 627" refId="ref24343" refString="DAYARATHNE M. C., PHOOKAMSAK R, HYDE K. D., MANAWASIN- GHE I. S., TO- ANUN C. &amp; JONES E. B. 2016. - Halodiatrype, a novel diatrypaceous genus from mangroves with H. salinicola and H. avicenniae spp. nov. Mycosphere 7: 612 - 627. https: // doi. org / 10.5943 / mycosphere / 7 / 5 / 7" type="journal article" year="2016">
Dayarathne
<emphasis box="[988,1040,1714,1740]" italics="true" pageId="33" pageNumber="52">et al.</emphasis>
(2016)
</bibRefCitation>
.
</paragraph>
<paragraph blockId="33.[813,965,1778,1804]" box="[813,965,1778,1804]" pageId="33" pageNumber="52">
<heading box="[813,965,1778,1804]" fontSize="11" level="3" pageId="33" pageNumber="52" reason="9">
<emphasis box="[813,965,1778,1804]" italics="true" pageId="33" pageNumber="52">Asexual morph</emphasis>
</heading>
</paragraph>
<paragraph blockId="33.[812,1455,1809,1900]" pageId="33" pageNumber="52">(on PDA after 60 d at 25°C) libertella-like, in black conidial drops. Conidia falcate, hyaline, 1-celled, smooth, upper end subacute, base truncate, curved to nearly semicircular.</paragraph>
<paragraph blockId="33.[813,887,1938,1964]" box="[813,887,1938,1964]" pageId="33" pageNumber="52">
<heading box="[813,887,1938,1964]" fontSize="9" level="3" pageId="33" pageNumber="52" reason="5">NOTES</heading>
</paragraph>
<paragraph blockId="33.[813,1456,1969,2028]" pageId="33" pageNumber="52">
<taxonomicName authorityName="Dayarathne &amp; K. D. Hyde" authorityYear="2016" box="[813,938,1969,1995]" class="Sordariomycetes" family="Diatrypaceae" genus="Halodiatrype" kingdom="Fungi" order="Xylariales" pageId="33" pageNumber="52" phylum="Ascomycota" rank="genus">
<emphasis box="[813,938,1969,1995]" italics="true" pageId="33" pageNumber="52">Halodiatrype</emphasis>
</taxonomicName>
was introduced by
<bibRefCitation author="DAYARATHNE M. C. &amp; HYDE K. D. &amp; GHE I. S. &amp; ANUN C. &amp; JONES E. B." box="[1139,1388,1969,1996]" pageId="33" pageNumber="52" pagination="612 - 627" refId="ref24343" refString="DAYARATHNE M. C., PHOOKAMSAK R, HYDE K. D., MANAWASIN- GHE I. S., TO- ANUN C. &amp; JONES E. B. 2016. - Halodiatrype, a novel diatrypaceous genus from mangroves with H. salinicola and H. avicenniae spp. nov. Mycosphere 7: 612 - 627. https: // doi. org / 10.5943 / mycosphere / 7 / 5 / 7" type="journal article" year="2016">
Dayarathne
<emphasis box="[1263,1312,1969,1995]" italics="true" pageId="33" pageNumber="52">et al.</emphasis>
(2016)
</bibRefCitation>
and is significantly different to other genera in this family by having asco-
</paragraph>
<caption ID-DOI="http://doi.org/10.5281/zenodo.7815087" ID-Zenodo-Dep="7815087" httpUri="https://zenodo.org/record/7815087/files/figure.png" pageId="34" pageNumber="53" startId="34.[132,143,1962,1980]" targetBox="[213,1374,215,1910]" targetPageId="34" targetType="figure">
<paragraph blockId="34.[132,1457,1962,2025]" pageId="34" pageNumber="53">
FIG. 14. —
<taxonomicName authority="Dayarathne &amp; K.D.Hyde" authorityName="Dayarathne &amp; K. D. Hyde" authorityYear="2020" box="[225,671,1962,1980]" class="Sordariomycetes" family="Diatrypaceae" genus="Halocryptovalsa" higherTaxonomySource="CoL" kingdom="Fungi" order="Xylariales" pageId="34" pageNumber="53" phylum="Ascomycota" rank="species" species="salicorniae" status="sp. nov.">
<emphasis box="[225,459,1962,1980]" italics="true" pageId="34" pageNumber="53">Halocryptovalsa salicorniae</emphasis>
Dayarathne &amp; K.D.Hyde
</taxonomicName>
,
<taxonomicNameLabel box="[678,746,1962,1980]" pageId="34" pageNumber="53" rank="species">sp. nov.</taxonomicNameLabel>
(MFLU 16-0551 holotype):
<emphasis bold="true" box="[994,1007,1962,1980]" pageId="34" pageNumber="53">A</emphasis>
, host (
<taxonomicName box="[1064,1184,1962,1980]" class="Magnoliopsida" family="Amaranthaceae" genus="Salicornia" kingdom="Plantae" order="Caryophyllales" pageId="34" pageNumber="53" phylum="Tracheophyta" rank="species" species="undetermined">
<emphasis box="[1064,1149,1962,1980]" italics="true" pageId="34" pageNumber="53">Salicornia</emphasis>
sp.
</taxonomicName>
);
<emphasis bold="true" box="[1196,1209,1962,1980]" pageId="34" pageNumber="53">B</emphasis>
,
<emphasis bold="true" box="[1220,1234,1962,1980]" pageId="34" pageNumber="53">C</emphasis>
, appearance of ascostromata on host;
<emphasis bold="true" box="[255,269,1985,2003]" pageId="34" pageNumber="53">D</emphasis>
, horizontal section through ascostroma;
<emphasis bold="true" box="[621,633,1985,2003]" pageId="34" pageNumber="53">E</emphasis>
, section through neck region;
<emphasis bold="true" box="[894,905,1985,2003]" pageId="34" pageNumber="53">F</emphasis>
, peridium;
<emphasis bold="true" box="[1002,1016,1984,2002]" pageId="34" pageNumber="53">G</emphasis>
,
<emphasis bold="true" box="[1026,1040,1985,2003]" pageId="34" pageNumber="53">H</emphasis>
, asci;
<emphasis bold="true" box="[1096,1102,1985,2003]" pageId="34" pageNumber="53">I</emphasis>
, asci with paraphyses;
<emphasis bold="true" box="[1304,1339,1985,2003]" pageId="34" pageNumber="53">J -M</emphasis>
, ascospores;
<emphasis bold="true" box="[132,146,2007,2025]" pageId="34" pageNumber="53">N</emphasis>
, germinating ascospores;
<emphasis bold="true" box="[377,392,2007,2025]" pageId="34" pageNumber="53">O</emphasis>
,
<emphasis bold="true" box="[403,416,2007,2025]" pageId="34" pageNumber="53">P</emphasis>
, culture on PDA (O-upper, P-lower). Scale bars: B, 500 µm; D-F, 100 μm; G-I, 50 μm; J-N, 5 μm.
</paragraph>
</caption>
<paragraph blockId="35.[130,776,215,529]" pageId="35" pageNumber="54">
mata lacking stromatal tissues,comparatively large ascospores with septa and a libertella-like asexual morph. Generally,
<taxonomicName box="[649,775,248,273]" class="Sordariomycetes" family="Diatrypaceae" kingdom="Fungi" order="Xylariales" pageId="35" pageNumber="54" phylum="Ascomycota" rank="family">
<emphasis box="[649,775,248,273]" italics="true" pageId="35" pageNumber="54">Diatrypaceae</emphasis>
</taxonomicName>
species have well-developed ascostromata with aseptate ascospores (Maharachchikumbura
<emphasis box="[369,415,311,337]" italics="true" pageId="35" pageNumber="54">et al.</emphasis>
2015). In our phylogenetic analyses, species belonging to this genus formed a well-separated (75% ML, 0.92 PP) clade (clade B) along with the marine genus
<taxonomicName authorityName="K. D. Hyde &amp; E. B. G. Jones, Mycological" authorityYear="1992" box="[645,766,375,401]" class="Sordariomycetes" family="Diatrypaceae" genus="Pedumispora" kingdom="Fungi" order="Xylariales" pageId="35" pageNumber="54" phylum="Ascomycota" rank="genus">
<emphasis box="[645,766,375,401]" italics="true" pageId="35" pageNumber="54">Pedumispora</emphasis>
</taxonomicName>
.
<taxonomicName authorityName="Dayarathne &amp; K. D. Hyde" authorityYear="2016" box="[132,254,406,432]" class="Sordariomycetes" family="Diatrypaceae" genus="Halodiatrype" kingdom="Fungi" order="Xylariales" pageId="35" pageNumber="54" phylum="Ascomycota" rank="genus">
<emphasis box="[132,254,406,432]" italics="true" pageId="35" pageNumber="54">Halodiatrype</emphasis>
</taxonomicName>
formed a well-separated (99% ML,90% MP,1.00PP) clade within
<taxonomicName box="[258,384,439,464]" class="Sordariomycetes" family="Diatrypaceae" kingdom="Fungi" order="Xylariales" pageId="35" pageNumber="54" phylum="Ascomycota" rank="family">
<emphasis box="[258,384,439,464]" italics="true" pageId="35" pageNumber="54">Diatrypaceae</emphasis>
</taxonomicName>
(
<figureCitation box="[398,454,438,465]" captionStart="FIG" captionStartId="10.[132,143,1917,1935]" captionTargetBox="[221,1353,215,1869]" captionTargetId="graphics-154@10.[221,1324,215,1869]" captionTargetPageId="10" captionText="FIG. 1. — Phylogram generated from the best scoring RAxML tree based on combined ITS and Btub sequence data. Bootstrap support values for maximum likelihood (ML,black) and maximum parsimony (MP, blue) equal or greater than 60 % are given above the nodes. Bayesian posterior probabilities (PP,green) equal or greater than 0.90 are shown above the branch. The tree is rooted to Xylaria hypoxylon (CBS 122620) and Kretzschmaria deusta (CBS 826.72). All sequences from ex-type strains are in bold. Symbols:, polysporous species;, octosporous species;, species with less than eight spores. Scale bar: 0.2 (expected number of nucleotide substitutions per site per branch)." figureDoi="http://doi.org/10.5281/zenodo.7815044" httpUri="https://zenodo.org/record/7815044/files/figure.png" pageId="35" pageNumber="54">Fig. 1</figureCitation>
) supported by ITS phylogenetic data (
<figureCitation box="[191,250,470,496]" captionStart="FIG" captionStartId="12.[132,143,1940,1958]" captionTargetBox="[334,1258,217,1823]" captionTargetId="graphics-121@12.[334,1229,217,1824]" captionTargetPageId="12" captionText="FIG. 2. — Phylogram generated from the best scoring RAxML tree based on ITS sequence data. Bootstrap support values for maximum likelihood (ML, black) and maximum parsimony (MP, blue) equal or greater than 60% are given above the nodes. Bayesian posterior probabilities (PP,green) equal or greater than 0.90 are shown above the branch. The tree is rooted to Xylaria hypoxylon (CBS 122620) and Kretzschmaria deusta (CBS 826.72). Scale bar: 0.09 (expected number of nucleotide substitutions per site per branch)." figureDoi="http://doi.org/10.5281/zenodo.7815048" httpUri="https://zenodo.org/record/7815048/files/figure.png" pageId="35" pageNumber="54">Fig. 2</figureCitation>
). This study is the first report of an asexual morph for this genus from an axenic culture of
<taxonomicName box="[529,762,502,528]" class="Sordariomycetes" family="Diatrypaceae" genus="Halodiatrype" kingdom="Fungi" order="Xylariales" pageId="35" pageNumber="54" phylum="Ascomycota" rank="species" species="avicenniae">
<emphasis box="[529,762,502,528]" italics="true" pageId="35" pageNumber="54">Halodiatrype avicenniae</emphasis>
</taxonomicName>
.
</paragraph>
</subSubSection>
</treatment>
</document>