716 lines
77 KiB
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716 lines
77 KiB
XML
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<mods:title id="3BF721AE9BE6B82BC43F5E721FAC81BE">A phylogenetic investigation of the taxonomically problematic Eucalyptus odorata complex (E. section Adnataria series Subbuxeales): evidence for extensive interspecific gene flow and reticulate evolution</mods:title>
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<mods:namePart id="D70BFB13E0239D8DD13F6E77A19A8AF1">Fahey, Patrick S.</mods:namePart>
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<emphasis id="E8BC7B0EFF8AFFD7BB674280FD90B1F3" bold="true" box="[98,555,1409,1437]" pageId="24" pageNumber="427">
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Phylogeny of
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<taxonomicName id="1DC8DC9FFF8AFFD7BA194280FD90B1F3" authority="Adnataria" authorityName="Adnataria" box="[284,555,1409,1437]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="24" pageNumber="427" phylum="Tracheophyta" rank="species" section="Adnataria" species="section">
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. section
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<emphasis id="E8BC7B0EFF8AFFD7BAAE4280FD90B1F3" bold="true" box="[427,555,1409,1437]" italics="true" pageId="24" pageNumber="427">Adnataria</emphasis>
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Although this study was focussed on the
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<taxonomicName id="1DC8DC9FFF8AFFD7B92142B5FD2EB1A5" box="[548,661,1459,1483]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="24" pageNumber="427" phylum="Tracheophyta" rank="species" species="odorata">
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<emphasis id="E8BC7B0EFF8AFFD7B92142B5FD2EB1A5" bold="true" box="[548,661,1459,1483]" italics="true" pageId="24" pageNumber="427">E. odorata</emphasis>
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complex, we have also produced one of the most resolved phylogenies for section
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<taxonomicName id="1DC8DC9FFF8AFFD7BBDB42F5FEF6B262" box="[222,333,1524,1548]" pageId="24" pageNumber="427" rank="section" section="Adnataria">
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<emphasis id="E8BC7B0EFF8AFFD7BBDB42F5FEF6B262" bold="true" box="[222,333,1524,1548]" italics="true" pageId="24" pageNumber="427">Adnataria</emphasis>
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</taxonomicName>
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(
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<figureCitation id="42F3BB99FF8AFFD7BA5A42F5FE25B262" box="[351,414,1524,1548]" captionStart="Fig" captionStartId="19.[127,164,1815,1838]" captionTargetBox="[127,1460,186,1784]" captionTargetId="graphics-2@19.[127,934,186,1780]" captionTargetPageId="19" captionText="Fig. 5. Maximum-likelihood phylogeny generated using RAXML, excluding samples with strong evidence for hybridisation and introgression in the combined ddRADseq and DArTseq dataset. Support values on branches are those from the ML and MP analysis, with branches with greater than 80% bootstrapping support in both analyses thickened. Series are labelled as per Nicolle (2019)." figureDoi="http://doi.org/10.5281/zenodo.10974605" httpUri="https://zenodo.org/record/10974605/files/figure.png" pageId="24" pageNumber="427">Fig. 5</figureCitation>
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). Previous phylogenetic studies of section
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<taxonomicName id="1DC8DC9FFF8AFFD7BBE14112FEE8B245" box="[228,339,1555,1579]" pageId="24" pageNumber="427" rank="section" section="Adnataria">
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<emphasis id="E8BC7B0EFF8AFFD7BBE14112FEE8B245" bold="true" box="[228,339,1555,1579]" italics="true" pageId="24" pageNumber="427">Adnataria</emphasis>
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have either relied on plastid DNA (
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<bibRefCitation id="BE59DAEDFF8AFFD7BB6E4135FE25B222" author="Flores-Renteria L & Rymer PD & Riegler M" box="[107,414,1588,1612]" pageId="24" pageNumber="427" pagination="70 - 87" refId="ref20809" refString="Flores-Renteria L, Rymer PD, Riegler M (2017) Unpacking boxes: integration of molecular, morphological and ecological approaches reveals extensive patterns of reticulate evolution in box eucalypts. Molecular Phylogenetics and Evolution 108, 70 - 87. doi: 10.1016 / j. ympev. 2017.01.019" type="journal article" year="2017">
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Flores-Rentería
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<emphasis id="E8BC7B0EFF8AFFD7BA254135FEE1B222" bold="true" box="[288,346,1588,1612]" italics="true" pageId="24" pageNumber="427">et al.</emphasis>
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2017
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</bibRefCitation>
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;
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<bibRefCitation id="BE59DAEDFF8AFFD7BAAA4135FD19B222" author="Alwadani KG & Janes JK & Andrew RL" box="[431,674,1588,1612]" pageId="24" pageNumber="427" pagination="76 - 86" refId="ref20141" refString="Alwadani KG, Janes JK, Andrew RL (2019) Chloroplast genome analysis of box-ironbark Eucalyptus. Molecular Phylogenetics and Evolution 136, 76 - 86. doi: 10.1016 / j. ympev. 2019.04.001" type="journal article" year="2019">
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||
Alwadani
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||
<emphasis id="E8BC7B0EFF8AFFD7B9214135FDE5B222" bold="true" box="[548,606,1588,1612]" italics="true" pageId="24" pageNumber="427">et al.</emphasis>
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2019
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</bibRefCitation>
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), which does not resolve phylogenetic relationships in the eucalypts because of a large cyto-nuclear discrepancy (
|
||
<bibRefCitation id="BE59DAEDFF8AFFD7B9774175FF20B2C2" author="Steane DA & Byrne M & Vaillancourt RE & Potts BM" pageId="24" pageNumber="427" pagination="25 - 40" refId="ref23079" refString="Steane DA, Byrne M, Vaillancourt RE, Potts BM (1998) Chloroplast DNA polymorphism signals complex interspecific interactions in Eucalyptus (Myrtaceae). Australian Systematic Botany 11, 25 - 40. doi: 10.1071 / SB 96028" type="journal article" year="1998">
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Steane
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<emphasis id="E8BC7B0EFF8AFFD7B9C24175FCBAB2E5" bold="true" box="[711,769,1651,1675]" italics="true" pageId="24" pageNumber="427">et al.</emphasis>
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1998
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</bibRefCitation>
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;
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<bibRefCitation id="BE59DAEDFF8AFFD7BBB74195FE1FB2C2" author="Jackson HD & Steane DA & Potts BM & Vaillancourt RE" box="[178,420,1684,1708]" pageId="24" pageNumber="427" pagination="739 - 751" refId="ref21286" refString="Jackson HD, Steane DA, Potts BM, Vaillancourt RE (1999) Chloroplast DNA evidence for reticulate evolution in Eucalyptus (Myrtaceae). Molecular Ecology 8, 739 - 751. doi: 10.1046 / j. 1365 - 294 X. 1999.00614. x" type="journal article" year="1999">
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Jackson
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<emphasis id="E8BC7B0EFF8AFFD7BA1E4195FEE1B2C2" bold="true" box="[283,346,1684,1708]" italics="true" pageId="24" pageNumber="427">et al.</emphasis>
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1999
|
||
</bibRefCitation>
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), internal transcribed spacer sequences, which do not provide enough resolution to reconstruct relationships within the section (
|
||
<bibRefCitation id="BE59DAEDFF8AFFD7B97541D5FF20B362" author="Steane DA & Nicolle D & McKinnon GE & Vaillancourt RE & Potts BM" pageId="24" pageNumber="427" pagination="49 - 62" refId="ref23121" refString="Steane DA, Nicolle D, McKinnon GE, Vaillancourt RE, Potts BM (2002) Higher-level relationships among the eucalypts are resolved by ITSsequence data. Australian Systematic Botany 15, 49 - 62. doi: 10.1071 / SB 00039" type="journal article" year="2002">
|
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Steane
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||
<emphasis id="E8BC7B0EFF8AFFD7B9C341D5FCBAB285" bold="true" box="[710,769,1747,1771]" italics="true" pageId="24" pageNumber="427">et al.</emphasis>
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2002
|
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</bibRefCitation>
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,
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<bibRefCitation id="BE59DAEDFF8AFFD7BBAC41F5FF59B362" author="Steane DA & Nicolle D & Potts BM" box="[169,226,1780,1804]" pageId="24" pageNumber="427" pagination="402 - 408" refId="ref23164" refString="Steane DA, Nicolle D, Potts BM (2007) Phylogenetic positioning of anomalous eucalypts by using ITS sequence data. Australian Systematic Botany 20, 402 - 408. doi: 10.1071 / SB 07013" type="journal article" year="2007">2007</bibRefCitation>
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;
|
||
<bibRefCitation id="BE59DAEDFF8AFFD7BBF541F5FE6DB362" author="Thornhill AH & Crisp MD & Kulheim C & Lam KE & Nelson LA & Yeates DK & Miller JT" box="[240,470,1780,1804]" pageId="24" pageNumber="427" pagination="29 - 48" refId="ref23399" refString="Thornhill AH, Crisp MD, Kulheim C, Lam KE, Nelson LA, Yeates DK, Miller JT (2019) A dated molecular perspective of eucalypt taxonomy, evolution and diversification. Australian Systematic Botany 32, 29 - 48. doi: 10.1071 / SB 18015" type="journal article" year="2019">
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Thornhill
|
||
<emphasis id="E8BC7B0EFF8AFFD7BA5A41F5FE2DB362" bold="true" box="[351,406,1780,1804]" italics="true" pageId="24" pageNumber="427">et al.</emphasis>
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2019
|
||
</bibRefCitation>
|
||
), or have not resolved any relationships between series and species with support (
|
||
<bibRefCitation id="BE59DAEDFF8AFFD7BB6E4035FEC8B322" author="Woodhams M & Steane DA & Jones RC & Nicolle D & Moulton V & Holland BR" box="[107,371,1843,1868]" pageId="24" pageNumber="427" pagination="62 - 77" refId="ref23475" refString="Woodhams M, Steane DA, Jones RC, Nicolle D, Moulton V, Holland BR (2013) Novel distances for dollo data. Systematic Biology 62, 62 - 77. doi: 10.1093 / sysbio / sys 071" type="journal article" year="2013">
|
||
Woodhams
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||
<emphasis id="E8BC7B0EFF8AFFD7BBF64035FE95B325" bold="true" box="[243,302,1843,1867]" italics="true" pageId="24" pageNumber="427">et al.</emphasis>
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2013
|
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</bibRefCitation>
|
||
). However, because our sampling was comprehensive only for taxa that commonly co-occur with members of the
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7BA524075FE70B3E2" box="[343,459,1908,1932]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="24" pageNumber="427" phylum="Tracheophyta" rank="species" species="odorata">
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||
<emphasis id="E8BC7B0EFF8AFFD7BA524075FE70B3E2" bold="true" box="[343,459,1908,1932]" italics="true" pageId="24" pageNumber="427">E. odorata</emphasis>
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||
</taxonomicName>
|
||
complex, we sampled only four of the nine series in
|
||
<emphasis id="E8BC7B0EFF8AFFD7BF4247B5FBE6B4A5" bold="true" box="[1095,1117,180,203]" italics="true" pageId="24" pageNumber="427">
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<collectionCode id="BCD93FD9FF8AFFD7BF4247B5FBE2B4A5" box="[1095,1113,180,203]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15670" name="Royal Botanic Garden Edinburgh" pageId="24" pageNumber="427" type="Herbarium">E</collectionCode>
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.
|
||
</emphasis>
|
||
section
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||
<taxonomicName id="1DC8DC9FFF8AFFD7BFBC47B5FA93B4A2" box="[1209,1320,180,204]" pageId="24" pageNumber="427" rank="section" section="Adnataria">
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<emphasis id="E8BC7B0EFF8AFFD7BFBC47B5FA93B4A2" bold="true" box="[1209,1320,180,204]" italics="true" pageId="24" pageNumber="427">Adnataria</emphasis>
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</taxonomicName>
|
||
that are recognised in the classification of
|
||
<bibRefCitation id="BE59DAEDFF8AFFD7BF6D47D5FABFB482" author="Nicolle D" box="[1128,1284,212,236]" pageId="24" pageNumber="427" refId="ref22308" refString="Nicolle D (2019) Classification of the eucalypts (Angophora, Corymbia and Eucalyptus) Version 4. Available at https: // www. dn. com. au / Classification-Of-The-Eucalypts. pdf" type="url" year="2019">Nicolle (2019)</bibRefCitation>
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||
. Three of the sampled series (
|
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<taxonomicName id="1DC8DC9FFF8AFFD7B8AB47F5FBFCB562" box="[942,1095,244,268]" pageId="24" pageNumber="427" rank="series" series="Heterophloiae">
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<emphasis id="E8BC7B0EFF8AFFD7B8AB47F5FBFCB562" bold="true" box="[942,1095,244,268]" italics="true" pageId="24" pageNumber="427">Heterophloiae</emphasis>
|
||
</taxonomicName>
|
||
,
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7BF5647F5FB6DB562" box="[1107,1238,244,268]" pageId="24" pageNumber="428" rank="series" series="Melliodorae">
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<emphasis id="E8BC7B0EFF8AFFD7BF5647F5FB6DB562" bold="true" box="[1107,1238,244,268]" italics="true" pageId="24" pageNumber="427">Melliodorae</emphasis>
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</taxonomicName>
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||
and
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7BE0D47F5FA34B562" box="[1288,1423,244,268]" pageId="24" pageNumber="428" rank="series" series="Subbuxeales">
|
||
<emphasis id="E8BC7B0EFF8AFFD7BE0D47F5FA34B562" bold="true" box="[1288,1423,244,268]" italics="true" pageId="24" pageNumber="427">Subbuxeales</emphasis>
|
||
</taxonomicName>
|
||
) were monophyletic, with the placement of
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7BFD54615FAE9B542" box="[1232,1362,276,300]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="24" pageNumber="427" phylum="Tracheophyta" rank="species" species="populnea">
|
||
<emphasis id="E8BC7B0EFF8AFFD7BFD54615FAE9B542" bold="true" box="[1232,1362,276,300]" italics="true" pageId="24" pageNumber="427">E. populnea</emphasis>
|
||
</taxonomicName>
|
||
as sister to
|
||
<emphasis id="E8BC7B0EFF8AFFD7B8374635FCFCB525" bold="true" box="[818,839,308,331]" italics="true" pageId="24" pageNumber="427">
|
||
<collectionCode id="BCD93FD9FF8AFFD7B8374635FCFFB525" box="[818,836,308,331]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15670" name="Royal Botanic Garden Edinburgh" pageId="24" pageNumber="427" type="Herbarium">E</collectionCode>
|
||
.
|
||
</emphasis>
|
||
series
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7B8974632FB90B525" box="[914,1067,307,331]" pageId="24" pageNumber="427" rank="series" series="Heterophloiae">
|
||
<emphasis id="E8BC7B0EFF8AFFD7B8974632FB90B525" bold="true" box="[914,1067,307,331]" italics="true" pageId="24" pageNumber="427">Heterophloiae</emphasis>
|
||
</taxonomicName>
|
||
, rendering
|
||
<emphasis id="E8BC7B0EFF8AFFD7BFAC4635FB04B525" bold="true" box="[1193,1215,308,331]" italics="true" pageId="24" pageNumber="427">
|
||
<collectionCode id="BCD93FD9FF8AFFD7BFAC4635FB00B525" box="[1193,1211,308,331]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15670" name="Royal Botanic Garden Edinburgh" pageId="24" pageNumber="427" type="Herbarium">E</collectionCode>
|
||
.
|
||
</emphasis>
|
||
series
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7BE0C4632FAD1B525" box="[1289,1386,307,331]" pageId="24" pageNumber="427" rank="series" series="Buxeales">
|
||
<emphasis id="E8BC7B0EFF8AFFD7BE0C4632FAD1B525" bold="true" box="[1289,1386,307,331]" italics="true" pageId="24" pageNumber="427">Buxeales</emphasis>
|
||
</taxonomicName>
|
||
polyphyletic (
|
||
<figureCitation id="42F3BB99FF8AFFD7B8744655FC14B502" box="[881,943,340,364]" captionStart="Fig" captionStartId="19.[127,164,1815,1838]" captionTargetBox="[127,1460,186,1784]" captionTargetId="graphics-2@19.[127,934,186,1780]" captionTargetPageId="19" captionText="Fig. 5. Maximum-likelihood phylogeny generated using RAXML, excluding samples with strong evidence for hybridisation and introgression in the combined ddRADseq and DArTseq dataset. Support values on branches are those from the ML and MP analysis, with branches with greater than 80% bootstrapping support in both analyses thickened. Series are labelled as per Nicolle (2019)." figureDoi="http://doi.org/10.5281/zenodo.10974605" httpUri="https://zenodo.org/record/10974605/files/figure.png" pageId="24" pageNumber="427">Fig. 5</figureCitation>
|
||
).
|
||
<collectionCode id="BCD93FD9FF8AFFD7B8C34655FC6CB502" box="[966,983,340,364]" country="USA" lsid="urn:lsid:biocol.org:col:15406" name="Harvard University - Arnold Arboretum" pageId="24" pageNumber="427" type="Herbarium">A</collectionCode>
|
||
possible explanation for the placement of this sample is introgression from
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7BF854675FA76B5E2" authority="H. Deane & Maiden" authorityName="H. Deane & Maiden" box="[1152,1485,372,396]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="24" pageNumber="427" phylum="Tracheophyta" rank="species" species="conica">
|
||
<emphasis id="E8BC7B0EFF8AFFD7BF854675FB53B5E2" bold="true" box="[1152,1256,372,396]" italics="true" pageId="24" pageNumber="427">E. conica</emphasis>
|
||
H.Deane & Maiden
|
||
</taxonomicName>
|
||
, a member of
|
||
<emphasis id="E8BC7B0EFF8AFFD7B8D64695FC52B5C5" bold="true" box="[979,1001,404,427]" italics="true" pageId="24" pageNumber="427">
|
||
<collectionCode id="BCD93FD9FF8AFFD7B8D64695FC5EB5C5" box="[979,997,404,427]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15670" name="Royal Botanic Garden Edinburgh" pageId="24" pageNumber="427" type="Herbarium">E</collectionCode>
|
||
.
|
||
</emphasis>
|
||
series
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7BF3A4692FB63B5C5" box="[1087,1240,403,427]" pageId="24" pageNumber="427" rank="series" series="Heterophloiae">
|
||
<emphasis id="E8BC7B0EFF8AFFD7BF3A4692FB63B5C5" bold="true" box="[1087,1240,403,427]" italics="true" pageId="24" pageNumber="427">Heterophloiae</emphasis>
|
||
</taxonomicName>
|
||
, which occurs at the collection locality and that we did not sample in this study. As we sampled only 3 of the 15 species placed in
|
||
<emphasis id="E8BC7B0EFF8AFFD7BE7146D5FA31B585" bold="true" box="[1396,1418,468,491]" italics="true" pageId="24" pageNumber="427">
|
||
<collectionCode id="BCD93FD9FF8AFFD7BE7146D5FA3DB585" box="[1396,1414,468,491]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15670" name="Royal Botanic Garden Edinburgh" pageId="24" pageNumber="427" type="Herbarium">E</collectionCode>
|
||
.
|
||
</emphasis>
|
||
series
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7B83746F2FC28B665" box="[818,915,499,523]" pageId="24" pageNumber="427" rank="series" series="Buxeales">
|
||
<emphasis id="E8BC7B0EFF8AFFD7B83746F2FC28B665" bold="true" box="[818,915,499,523]" italics="true" pageId="24" pageNumber="427">Buxeales</emphasis>
|
||
</taxonomicName>
|
||
by
|
||
<bibRefCitation id="BE59DAEDFF8AFFD7B8C646F5FBDCB662" author="Nicolle D" box="[963,1127,500,524]" pageId="24" pageNumber="427" refId="ref22308" refString="Nicolle D (2019) Classification of the eucalypts (Angophora, Corymbia and Eucalyptus) Version 4. Available at https: // www. dn. com. au / Classification-Of-The-Eucalypts. pdf" type="url" year="2019">Nicolle (2019)</bibRefCitation>
|
||
, including a single
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7BE4B46F5FA69B665" box="[1358,1490,499,523]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="24" pageNumber="427" phylum="Tracheophyta" rank="species" species="populnea">
|
||
<emphasis id="E8BC7B0EFF8AFFD7BE4B46F5FA69B665" bold="true" box="[1358,1490,499,523]" italics="true" pageId="24" pageNumber="427">E. populnea</emphasis>
|
||
</taxonomicName>
|
||
individual, and as the group shares several morphological traits (
|
||
<bibRefCitation id="BE59DAEDFF8AFFD7B87B4535FBA2B622" author="Brooker MIH" box="[894,1049,564,588]" pageId="24" pageNumber="427" pagination="79 - 148" refId="ref20371" refString="Brooker MIH (2000) A new classification of the genus Eucalyptus L'Her. (Myrtaceae). Australian Systematic Botany 13, 79 - 148. doi: 10.1071 / SB 98008" type="journal article" year="2000">Brooker 2000</bibRefCitation>
|
||
), we recommend further phylogenetic investigation of the series to test its monophyly.
|
||
</paragraph>
|
||
<paragraph id="DA77A71CFF8AFFD7B8574575FB7AB142" blockId="24.[818,1490,180,1932]" pageId="24" pageNumber="427">
|
||
<bibRefCitation id="BE59DAEDFF8AFFD7B8574575FC4DB6E2" author="Brooker MIH" box="[850,1014,628,652]" pageId="24" pageNumber="427" pagination="79 - 148" refId="ref20371" refString="Brooker MIH (2000) A new classification of the genus Eucalyptus L'Her. (Myrtaceae). Australian Systematic Botany 13, 79 - 148. doi: 10.1071 / SB 98008" type="journal article" year="2000">Brooker (2000)</bibRefCitation>
|
||
placed
|
||
<emphasis id="E8BC7B0EFF8AFFD7BF434575FBE7B6E5" bold="true" box="[1094,1116,628,651]" italics="true" pageId="24" pageNumber="427">
|
||
<collectionCode id="BCD93FD9FF8AFFD7BF434575FBE3B6E5" box="[1094,1112,628,651]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15670" name="Royal Botanic Garden Edinburgh" pageId="24" pageNumber="427" type="Herbarium">E</collectionCode>
|
||
.
|
||
</emphasis>
|
||
series
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7BFA74575FA9EB6E2" box="[1186,1317,628,652]" pageId="24" pageNumber="427" rank="series" series="Melliodorae">
|
||
<emphasis id="E8BC7B0EFF8AFFD7BFA74575FA9EB6E2" bold="true" box="[1186,1317,628,652]" italics="true" pageId="24" pageNumber="427">Melliodorae</emphasis>
|
||
</taxonomicName>
|
||
in
|
||
<emphasis id="E8BC7B0EFF8AFFD7BE404575FAE0B6E5" bold="true" box="[1349,1371,628,651]" italics="true" pageId="24" pageNumber="427">
|
||
<collectionCode id="BCD93FD9FF8AFFD7BE404575FAECB6E5" box="[1349,1367,628,651]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15670" name="Royal Botanic Garden Edinburgh" pageId="24" pageNumber="427" type="Herbarium">E</collectionCode>
|
||
.
|
||
</emphasis>
|
||
subsection
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7B8374595FC11B6C2" box="[818,938,660,684]" pageId="24" pageNumber="427" rank="subSection" subSection="Terminales">
|
||
<emphasis id="E8BC7B0EFF8AFFD7B8374595FC11B6C2" bold="true" box="[818,938,660,684]" italics="true" pageId="24" pageNumber="427">Terminales</emphasis>
|
||
</taxonomicName>
|
||
along with
|
||
<emphasis id="E8BC7B0EFF8AFFD7BF3B4595FBEFB6C5" bold="true" box="[1086,1108,660,683]" italics="true" pageId="24" pageNumber="427">
|
||
<collectionCode id="BCD93FD9FF8AFFD7BF3B4595FBEBB6C5" box="[1086,1104,660,683]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15670" name="Royal Botanic Garden Edinburgh" pageId="24" pageNumber="427" type="Herbarium">E</collectionCode>
|
||
.
|
||
</emphasis>
|
||
series
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7BFAF4595FAF8B6C2" box="[1194,1347,660,684]" pageId="24" pageNumber="427" rank="series" series="Heterophloiae">
|
||
<emphasis id="E8BC7B0EFF8AFFD7BFAF4595FAF8B6C2" bold="true" box="[1194,1347,660,684]" italics="true" pageId="24" pageNumber="427">Heterophloiae</emphasis>
|
||
</taxonomicName>
|
||
and several series not sampled in our study, although he placed
|
||
<emphasis id="E8BC7B0EFF8AFFD7BE7345B5FA37B6A5" bold="true" box="[1398,1420,692,715]" italics="true" pageId="24" pageNumber="427">
|
||
<collectionCode id="BCD93FD9FF8AFFD7BE7345B5FA33B6A5" box="[1398,1416,692,715]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15670" name="Royal Botanic Garden Edinburgh" pageId="24" pageNumber="427" type="Herbarium">E</collectionCode>
|
||
.
|
||
</emphasis>
|
||
series
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7B83745D5FC28B682" box="[818,915,724,748]" pageId="24" pageNumber="427" rank="series" series="Buxeales">
|
||
<emphasis id="E8BC7B0EFF8AFFD7B83745D5FC28B682" bold="true" box="[818,915,724,748]" italics="true" pageId="24" pageNumber="427">Buxeales</emphasis>
|
||
</taxonomicName>
|
||
and
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7B8CD45D5FBF4B682" box="[968,1103,724,748]" pageId="24" pageNumber="428" rank="series" series="Subbuxeales">
|
||
<emphasis id="E8BC7B0EFF8AFFD7B8CD45D5FBF4B682" bold="true" box="[968,1103,724,748]" italics="true" pageId="24" pageNumber="427">Subbuxeales</emphasis>
|
||
</taxonomicName>
|
||
in
|
||
<emphasis id="E8BC7B0EFF8AFFD7BF7445D5FB3CB685" bold="true" box="[1137,1159,724,747]" italics="true" pageId="24" pageNumber="427">
|
||
<collectionCode id="BCD93FD9FF8AFFD7BF7445D5FB38B685" box="[1137,1155,724,747]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15670" name="Royal Botanic Garden Edinburgh" pageId="24" pageNumber="427" type="Herbarium">E</collectionCode>
|
||
.
|
||
</emphasis>
|
||
subsection
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7BE0145D5FAE4B682" box="[1284,1375,724,748]" pageId="24" pageNumber="427" rank="subSection" subSection="Apicales">
|
||
<emphasis id="E8BC7B0EFF8AFFD7BE0145D5FAE4B682" bold="true" box="[1284,1375,724,748]" italics="true" pageId="24" pageNumber="427">Apicales</emphasis>
|
||
</taxonomicName>
|
||
. This does not match our phylogeny, which shows
|
||
<emphasis id="E8BC7B0EFF8AFFD7BFD345F5FB57B765" bold="true" box="[1238,1260,756,779]" italics="true" pageId="24" pageNumber="427">
|
||
<collectionCode id="BCD93FD9FF8AFFD7BFD345F5FB53B765" box="[1238,1256,756,779]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15670" name="Royal Botanic Garden Edinburgh" pageId="24" pageNumber="427" type="Herbarium">E</collectionCode>
|
||
.
|
||
</emphasis>
|
||
series
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7BE3645F5FA0DB762" box="[1331,1462,756,780]" pageId="24" pageNumber="427" rank="series" series="Melliodorae">
|
||
<emphasis id="E8BC7B0EFF8AFFD7BE3645F5FA0DB762" bold="true" box="[1331,1462,756,780]" italics="true" pageId="24" pageNumber="427">Melliodorae</emphasis>
|
||
</taxonomicName>
|
||
as more closely related to the last two series than to
|
||
<emphasis id="E8BC7B0EFF8AFFD7BE714415FA31B745" bold="true" box="[1396,1418,788,811]" italics="true" pageId="24" pageNumber="427">
|
||
<collectionCode id="BCD93FD9FF8AFFD7BE714415FA3DB745" box="[1396,1414,788,811]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15670" name="Royal Botanic Garden Edinburgh" pageId="24" pageNumber="427" type="Herbarium">E</collectionCode>
|
||
.
|
||
</emphasis>
|
||
series
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7B8374435FC70B722" box="[818,971,820,844]" pageId="24" pageNumber="427" rank="series" series="Heterophloiae">
|
||
<emphasis id="E8BC7B0EFF8AFFD7B8374435FC70B722" bold="true" box="[818,971,820,844]" italics="true" pageId="24" pageNumber="427">Heterophloiae</emphasis>
|
||
</taxonomicName>
|
||
(
|
||
<figureCitation id="42F3BB99FF8AFFD7B8DE4435FBA2B722" box="[987,1049,820,844]" captionStart="Fig" captionStartId="19.[127,164,1815,1838]" captionTargetBox="[127,1460,186,1784]" captionTargetId="graphics-2@19.[127,934,186,1780]" captionTargetPageId="19" captionText="Fig. 5. Maximum-likelihood phylogeny generated using RAXML, excluding samples with strong evidence for hybridisation and introgression in the combined ddRADseq and DArTseq dataset. Support values on branches are those from the ML and MP analysis, with branches with greater than 80% bootstrapping support in both analyses thickened. Series are labelled as per Nicolle (2019)." figureDoi="http://doi.org/10.5281/zenodo.10974605" httpUri="https://zenodo.org/record/10974605/files/figure.png" pageId="24" pageNumber="427">Fig. 5</figureCitation>
|
||
). No previous phylogenetic studies have resolved these subsections to be reciprocally monophyletic (
|
||
<bibRefCitation id="BE59DAEDFF8AFFD7B83E4475FB89B7E2" author="Woodhams M & Steane DA & Jones RC & Nicolle D & Moulton V & Holland BR" box="[827,1074,883,908]" pageId="24" pageNumber="427" pagination="62 - 77" refId="ref23475" refString="Woodhams M, Steane DA, Jones RC, Nicolle D, Moulton V, Holland BR (2013) Novel distances for dollo data. Systematic Biology 62, 62 - 77. doi: 10.1093 / sysbio / sys 071" type="journal article" year="2013">
|
||
Woodhams
|
||
<emphasis id="E8BC7B0EFF8AFFD7B8BE4475FC48B7E5" bold="true" box="[955,1011,883,907]" italics="true" pageId="24" pageNumber="427">et al.</emphasis>
|
||
2013
|
||
</bibRefCitation>
|
||
;
|
||
<bibRefCitation id="BE59DAEDFF8AFFD7BF444475FAD8B7E2" author="Flores-Renteria L & Rymer PD & Riegler M" box="[1089,1379,883,908]" pageId="24" pageNumber="427" pagination="70 - 87" refId="ref20809" refString="Flores-Renteria L, Rymer PD, Riegler M (2017) Unpacking boxes: integration of molecular, morphological and ecological approaches reveals extensive patterns of reticulate evolution in box eucalypts. Molecular Phylogenetics and Evolution 108, 70 - 87. doi: 10.1016 / j. ympev. 2017.01.019" type="journal article" year="2017">
|
||
Flores-Rentería
|
||
<emphasis id="E8BC7B0EFF8AFFD7BFE94475FA98B7E5" bold="true" box="[1260,1315,883,907]" italics="true" pageId="24" pageNumber="427">et al.</emphasis>
|
||
2017
|
||
</bibRefCitation>
|
||
), suggesting a re-assessment of the subsectional classification within
|
||
<emphasis id="E8BC7B0EFF8AFFD7B83744B5FCFCB7A5" bold="true" box="[818,839,948,971]" italics="true" pageId="24" pageNumber="427">
|
||
<collectionCode id="BCD93FD9FF8AFFD7B83744B5FCFFB7A5" box="[818,836,948,971]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15670" name="Royal Botanic Garden Edinburgh" pageId="24" pageNumber="427" type="Herbarium">E</collectionCode>
|
||
.
|
||
</emphasis>
|
||
section
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7B8A044B5FBAFB7A2" box="[933,1044,948,972]" pageId="24" pageNumber="427" rank="section" section="Adnataria">
|
||
<emphasis id="E8BC7B0EFF8AFFD7B8A044B5FBAFB7A2" bold="true" box="[933,1044,948,972]" italics="true" pageId="24" pageNumber="427">Adnataria</emphasis>
|
||
</taxonomicName>
|
||
may be needed. Brooker’s
|
||
<emphasis id="E8BC7B0EFF8AFFD7BE4744B5FAECB7A5" bold="true" box="[1346,1367,948,971]" italics="true" pageId="24" pageNumber="427">
|
||
<collectionCode id="BCD93FD9FF8AFFD7BE4744B5FAEFB7A5" box="[1346,1364,948,971]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15670" name="Royal Botanic Garden Edinburgh" pageId="24" pageNumber="427" type="Herbarium">E</collectionCode>
|
||
.
|
||
</emphasis>
|
||
subsection
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7B83744D2FC11B785" box="[818,938,979,1003]" pageId="24" pageNumber="427" rank="subSection" subSection="Terminales">
|
||
<emphasis id="E8BC7B0EFF8AFFD7B83744D2FC11B785" bold="true" box="[818,938,979,1003]" italics="true" pageId="24" pageNumber="427">Terminales</emphasis>
|
||
</taxonomicName>
|
||
was defined as including species with inflexed stamens and an outer ring of staminodes (
|
||
<bibRefCitation id="BE59DAEDFF8AFFD7BE2144F5FA7AB062" author="Brooker MIH" box="[1316,1473,1012,1036]" pageId="24" pageNumber="427" pagination="79 - 148" refId="ref20371" refString="Brooker MIH (2000) A new classification of the genus Eucalyptus L'Her. (Myrtaceae). Australian Systematic Botany 13, 79 - 148. doi: 10.1071 / SB 98008" type="journal article" year="2000">Brooker 2000</bibRefCitation>
|
||
), which, if our phylogeny is a true representation of evolutionary relationships, suggests that these traits may either be the ancestral state of
|
||
<emphasis id="E8BC7B0EFF8AFFD7B8B24355FC76B005" bold="true" box="[951,973,1108,1131]" italics="true" pageId="24" pageNumber="427">
|
||
<collectionCode id="BCD93FD9FF8AFFD7B8B24355FC72B005" box="[951,969,1108,1131]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15670" name="Royal Botanic Garden Edinburgh" pageId="24" pageNumber="427" type="Herbarium">E</collectionCode>
|
||
.
|
||
</emphasis>
|
||
section
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7BF2C4355FB23B002" box="[1065,1176,1108,1132]" pageId="24" pageNumber="427" rank="section" section="Adnataria">
|
||
<emphasis id="E8BC7B0EFF8AFFD7BF2C4355FB23B002" bold="true" box="[1065,1176,1108,1132]" italics="true" pageId="24" pageNumber="427">Adnataria</emphasis>
|
||
</taxonomicName>
|
||
or independently derived in both series, especially given the placement of
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7BE194375FA39B0E5" box="[1308,1410,1140,1163]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="24" pageNumber="427" phylum="Tracheophyta" rank="species" species="porosa">
|
||
<emphasis id="E8BC7B0EFF8AFFD7BE194375FA39B0E5" bold="true" box="[1308,1410,1140,1163]" italics="true" pageId="24" pageNumber="427">E. porosa</emphasis>
|
||
</taxonomicName>
|
||
, which lacks staminodes, in
|
||
<emphasis id="E8BC7B0EFF8AFFD7BF114395FB91B0C5" bold="true" box="[1044,1066,1172,1195]" italics="true" pageId="24" pageNumber="427">
|
||
<collectionCode id="BCD93FD9FF8AFFD7BF114395FB9DB0C5" box="[1044,1062,1172,1195]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15670" name="Royal Botanic Garden Edinburgh" pageId="24" pageNumber="427" type="Herbarium">E</collectionCode>
|
||
.
|
||
</emphasis>
|
||
series
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7BF734392FB42B0C5" box="[1142,1273,1171,1195]" pageId="24" pageNumber="427" rank="series" series="Melliodorae">
|
||
<emphasis id="E8BC7B0EFF8AFFD7BF734392FB42B0C5" bold="true" box="[1142,1273,1171,1195]" italics="true" pageId="24" pageNumber="427">Melliodorae</emphasis>
|
||
</taxonomicName>
|
||
. The close relationship between
|
||
<emphasis id="E8BC7B0EFF8AFFD7B8CD43B5FC66B0A5" bold="true" box="[968,989,1204,1227]" italics="true" pageId="24" pageNumber="427">
|
||
<collectionCode id="BCD93FD9FF8AFFD7B8CD43B5FC61B0A5" box="[968,986,1204,1227]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15670" name="Royal Botanic Garden Edinburgh" pageId="24" pageNumber="427" type="Herbarium">E</collectionCode>
|
||
.
|
||
</emphasis>
|
||
series
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7BF2D43B5FB32B0A2" box="[1064,1161,1204,1228]" pageId="24" pageNumber="427" rank="series" series="Buxeales">
|
||
<emphasis id="E8BC7B0EFF8AFFD7BF2D43B5FB32B0A2" bold="true" box="[1064,1161,1204,1228]" italics="true" pageId="24" pageNumber="427">Buxeales</emphasis>
|
||
</taxonomicName>
|
||
and
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7BFC543B5FAFCB0A2" box="[1216,1351,1204,1228]" pageId="24" pageNumber="428" rank="series" series="Subbuxeales">
|
||
<emphasis id="E8BC7B0EFF8AFFD7BFC543B5FAFCB0A2" bold="true" box="[1216,1351,1204,1228]" italics="true" pageId="24" pageNumber="427">Subbuxeales</emphasis>
|
||
</taxonomicName>
|
||
is consistent with established classifications, with some authors not recognising
|
||
<emphasis id="E8BC7B0EFF8AFFD7B87C43F5FC34B165" bold="true" box="[889,911,1268,1291]" italics="true" pageId="24" pageNumber="427">
|
||
<collectionCode id="BCD93FD9FF8AFFD7B87C43F5FC30B165" box="[889,907,1268,1291]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15670" name="Royal Botanic Garden Edinburgh" pageId="24" pageNumber="427" type="Herbarium">E</collectionCode>
|
||
.
|
||
</emphasis>
|
||
series
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7B8DD43F2FBE4B165" box="[984,1119,1267,1291]" pageId="24" pageNumber="427" rank="series" series="Subbuxeales">
|
||
<emphasis id="E8BC7B0EFF8AFFD7B8DD43F2FBE4B165" bold="true" box="[984,1119,1267,1291]" italics="true" pageId="24" pageNumber="427">Subbuxeales</emphasis>
|
||
</taxonomicName>
|
||
as distinct from
|
||
<emphasis id="E8BC7B0EFF8AFFD7BE1743F5FA93B165" bold="true" box="[1298,1320,1268,1291]" italics="true" pageId="24" pageNumber="427">
|
||
<collectionCode id="BCD93FD9FF8AFFD7BE1743F5FA9FB165" box="[1298,1316,1268,1291]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15670" name="Royal Botanic Garden Edinburgh" pageId="24" pageNumber="427" type="Herbarium">E</collectionCode>
|
||
.
|
||
</emphasis>
|
||
series
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7BE7443F2FA69B165" box="[1393,1490,1267,1291]" pageId="24" pageNumber="427" rank="series" series="Buxeales">
|
||
<emphasis id="E8BC7B0EFF8AFFD7BE7443F2FA69B165" bold="true" box="[1393,1490,1267,1291]" italics="true" pageId="24" pageNumber="427">Buxeales</emphasis>
|
||
</taxonomicName>
|
||
(
|
||
<bibRefCitation id="BE59DAEDFF8AFFD7B83E4215FC74B142" author="Brooker MIH" box="[827,975,1300,1324]" pageId="24" pageNumber="427" pagination="79 - 148" refId="ref20371" refString="Brooker MIH (2000) A new classification of the genus Eucalyptus L'Her. (Myrtaceae). Australian Systematic Botany 13, 79 - 148. doi: 10.1071 / SB 98008" type="journal article" year="2000">Brooker 2000</bibRefCitation>
|
||
;
|
||
<bibRefCitation id="BE59DAEDFF8AFFD7B8D84215FB0AB142" author="Brooker MIH & Slee AV & Connors JR & Duffy S & West J" box="[989,1201,1300,1324]" pageId="24" pageNumber="427" refId="ref20437" refString="Brooker MIH, Slee AV, Connors JR, Duffy S, West J (2015) ' EUCLID: eucalypts of Australia', 4 th edn. (CSIRO: Canberra, ACT, Australia)" type="book" year="2015">
|
||
Brooker
|
||
<emphasis id="E8BC7B0EFF8AFFD7BF3F4215FBCAB142" bold="true" box="[1082,1137,1300,1324]" italics="true" pageId="24" pageNumber="427">et al.</emphasis>
|
||
2015
|
||
</bibRefCitation>
|
||
).
|
||
</paragraph>
|
||
<paragraph id="DA77A71CFF8AFFD6B8574234FEB9B5A2" blockId="24.[818,1490,180,1932]" lastBlockId="25.[98,770,180,1772]" lastPageId="25" lastPageNumber="428" pageId="24" pageNumber="427">
|
||
We are able to confirm that
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7BFB14235FA9AB125" box="[1204,1313,1332,1355]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="24" pageNumber="427" phylum="Tracheophyta" rank="species" species="porosa">
|
||
<emphasis id="E8BC7B0EFF8AFFD7BFB14235FA9AB125" bold="true" box="[1204,1313,1332,1355]" italics="true" pageId="24" pageNumber="427">E. porosa</emphasis>
|
||
</taxonomicName>
|
||
is best placed in
|
||
<emphasis id="E8BC7B0EFF8AFFD7B8524255FCD6B105" bold="true" box="[855,877,1364,1387]" italics="true" pageId="24" pageNumber="427">
|
||
<collectionCode id="BCD93FD9FF8AFFD7B8524255FCD2B105" box="[855,873,1364,1387]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15670" name="Royal Botanic Garden Edinburgh" pageId="24" pageNumber="427" type="Herbarium">E</collectionCode>
|
||
.
|
||
</emphasis>
|
||
series
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7B8C94252FBF4B105" box="[972,1103,1363,1387]" pageId="24" pageNumber="427" rank="series" series="Melliodorae">
|
||
<emphasis id="E8BC7B0EFF8AFFD7B8C94252FBF4B105" bold="true" box="[972,1103,1363,1387]" italics="true" pageId="24" pageNumber="427">Melliodorae</emphasis>
|
||
</taxonomicName>
|
||
(
|
||
<figureCitation id="42F3BB99FF8AFFD7BF6D4255FB14B102" box="[1128,1199,1364,1388]" captionStart="Fig" captionStartId="19.[127,164,1815,1838]" captionTargetBox="[127,1460,186,1784]" captionTargetId="graphics-2@19.[127,934,186,1780]" captionTargetPageId="19" captionText="Fig. 5. Maximum-likelihood phylogeny generated using RAXML, excluding samples with strong evidence for hybridisation and introgression in the combined ddRADseq and DArTseq dataset. Support values on branches are those from the ML and MP analysis, with branches with greater than 80% bootstrapping support in both analyses thickened. Series are labelled as per Nicolle (2019)." figureDoi="http://doi.org/10.5281/zenodo.10974605" httpUri="https://zenodo.org/record/10974605/files/figure.png" pageId="24" pageNumber="427">Fig. 5</figureCitation>
|
||
), despite morphological similarities to members of the
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7BFDD4275FAE0B1E2" box="[1240,1371,1396,1420]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="24" pageNumber="427" phylum="Tracheophyta" rank="species" species="odorata">
|
||
<emphasis id="E8BC7B0EFF8AFFD7BFDD4275FAE0B1E2" bold="true" box="[1240,1371,1396,1420]" italics="true" pageId="24" pageNumber="427">E. odorata</emphasis>
|
||
</taxonomicName>
|
||
complex (
|
||
<emphasis id="E8BC7B0EFF8AFFD7B83E4295FCEAB1C5" bold="true" box="[827,849,1428,1451]" italics="true" pageId="24" pageNumber="427">
|
||
<collectionCode id="BCD93FD9FF8AFFD7B83E4295FCF6B1C5" box="[827,845,1428,1451]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15670" name="Royal Botanic Garden Edinburgh" pageId="24" pageNumber="427" type="Herbarium">E</collectionCode>
|
||
.
|
||
</emphasis>
|
||
series
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7B8994295FB98B1C2" box="[924,1059,1428,1452]" pageId="24" pageNumber="427" rank="series" series="Subbuxeales">
|
||
<emphasis id="E8BC7B0EFF8AFFD7B8994295FB98B1C2" bold="true" box="[924,1059,1428,1452]" italics="true" pageId="24" pageNumber="427">Subbuxeales</emphasis>
|
||
</taxonomicName>
|
||
), including its typically mallee growth habit, lack of an operculum scar and axillary inflorescence arrangement (
|
||
<bibRefCitation id="BE59DAEDFF8AFFD7B8D242D5FB79B182" author="Brooker MIH & Slee AV & Connors JR & Duffy S & West J" box="[983,1218,1492,1516]" pageId="24" pageNumber="427" refId="ref20437" refString="Brooker MIH, Slee AV, Connors JR, Duffy S, West J (2015) ' EUCLID: eucalypts of Australia', 4 th edn. (CSIRO: Canberra, ACT, Australia)" type="book" year="2015">
|
||
Brooker
|
||
<emphasis id="E8BC7B0EFF8AFFD7BF3B42D5FBC0B182" bold="true" box="[1086,1147,1492,1516]" italics="true" pageId="24" pageNumber="427">et al.</emphasis>
|
||
2015
|
||
</bibRefCitation>
|
||
). This aligns with the classification of
|
||
<bibRefCitation id="BE59DAEDFF8AFFD7B8F042F5FB25B262" author="Nicolle D" box="[1013,1182,1524,1548]" pageId="24" pageNumber="427" refId="ref22308" refString="Nicolle D (2019) Classification of the eucalypts (Angophora, Corymbia and Eucalyptus) Version 4. Available at https: // www. dn. com. au / Classification-Of-The-Eucalypts. pdf" type="url" year="2019">Nicolle (2019)</bibRefCitation>
|
||
, but not that of
|
||
<bibRefCitation id="BE59DAEDFF8AFFD7BE7C42F5FCC5B242" author="Brooker MIH" pageId="24" pageNumber="427" pagination="79 - 148" refId="ref20371" refString="Brooker MIH (2000) A new classification of the genus Eucalyptus L'Her. (Myrtaceae). Australian Systematic Botany 13, 79 - 148. doi: 10.1071 / SB 98008" type="journal article" year="2000">Brooker (2000)</bibRefCitation>
|
||
who considered this species a member of
|
||
<emphasis id="E8BC7B0EFF8AFFD7BE774115FA33B245" bold="true" box="[1394,1416,1556,1579]" italics="true" pageId="24" pageNumber="427">
|
||
<collectionCode id="BCD93FD9FF8AFFD7BE774115FA3FB245" box="[1394,1412,1556,1579]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15670" name="Royal Botanic Garden Edinburgh" pageId="24" pageNumber="427" type="Herbarium">E</collectionCode>
|
||
.
|
||
</emphasis>
|
||
series
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7B8374135FC28B222" box="[818,915,1588,1612]" pageId="24" pageNumber="427" rank="series" series="Buxeales">
|
||
<emphasis id="E8BC7B0EFF8AFFD7B8374135FC28B222" bold="true" box="[818,915,1588,1612]" italics="true" pageId="24" pageNumber="427">Buxeales</emphasis>
|
||
</taxonomicName>
|
||
, which included the
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7BF8A4135FABDB222" box="[1167,1286,1588,1612]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="24" pageNumber="427" phylum="Tracheophyta" rank="species" species="odorata">
|
||
<emphasis id="E8BC7B0EFF8AFFD7BF8A4135FABDB222" bold="true" box="[1167,1286,1588,1612]" italics="true" pageId="24" pageNumber="427">E. odorata</emphasis>
|
||
</taxonomicName>
|
||
complex in their classification.
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7B8DC4152FA94B205" box="[985,1327,1619,1644]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="24" pageNumber="427" phylum="Tracheophyta" rank="series" series="Melliodorae">
|
||
<emphasis id="E8BC7B0EFF8AFFD7B8DC4152FBF4B205" bold="true" box="[985,1103,1619,1643]" italics="true" pageId="24" pageNumber="427">Eucalyptus</emphasis>
|
||
series
|
||
<emphasis id="E8BC7B0EFF8AFFD7BFA94152FA94B205" bold="true" box="[1196,1327,1619,1643]" italics="true" pageId="24" pageNumber="427">Melliodorae</emphasis>
|
||
</taxonomicName>
|
||
is united by several key morphological traits that
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7BFDB4175FAFDB2E5" box="[1246,1350,1652,1675]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="24" pageNumber="427" phylum="Tracheophyta" rank="species" species="porosa">
|
||
<emphasis id="E8BC7B0EFF8AFFD7BFDB4175FAFDB2E5" bold="true" box="[1246,1350,1652,1675]" italics="true" pageId="24" pageNumber="427">E. porosa</emphasis>
|
||
</taxonomicName>
|
||
also shares, namely, the outer operculum being held to anthesis, axillary inflorescences, an intramarginal vein remote from the leaf edge, and a tardily deciduous, broad staminal ring. Only the first two of these characteristics are shared with members of
|
||
<emphasis id="E8BC7B0EFF8AFFD7B8534015FCD7B345" bold="true" box="[854,876,1812,1835]" italics="true" pageId="24" pageNumber="427">
|
||
<collectionCode id="BCD93FD9FF8AFFD7B8534015FCD3B345" box="[854,872,1812,1835]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15670" name="Royal Botanic Garden Edinburgh" pageId="24" pageNumber="427" type="Herbarium">E</collectionCode>
|
||
.
|
||
</emphasis>
|
||
series
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7B8CC4012FADAB342" authority="(Brooker et al. 2015)" baseAuthorityName="Brooker" baseAuthorityYear="2015" box="[969,1377,1811,1836]" pageId="24" pageNumber="427" rank="series" series="Subbuxeales">
|
||
<emphasis id="E8BC7B0EFF8AFFD7B8CC4012FBEBB345" bold="true" box="[969,1104,1811,1835]" italics="true" pageId="24" pageNumber="427">Subbuxeales</emphasis>
|
||
(
|
||
<bibRefCitation id="BE59DAEDFF8AFFD7BF6D4015FAEDB342" author="Brooker MIH & Slee AV & Connors JR & Duffy S & West J" box="[1128,1366,1811,1836]" pageId="24" pageNumber="427" refId="ref20437" refString="Brooker MIH, Slee AV, Connors JR, Duffy S, West J (2015) ' EUCLID: eucalypts of Australia', 4 th edn. (CSIRO: Canberra, ACT, Australia)" type="book" year="2015">
|
||
Brooker
|
||
<emphasis id="E8BC7B0EFF8AFFD7BFD54015FAB5B345" bold="true" box="[1232,1294,1811,1835]" italics="true" pageId="24" pageNumber="427">et al.</emphasis>
|
||
2015
|
||
</bibRefCitation>
|
||
)
|
||
</taxonomicName>
|
||
, whereas
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7B8374035FC03B325" box="[818,952,1843,1867]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="24" pageNumber="427" phylum="Tracheophyta" rank="species" species="froggattii">
|
||
<emphasis id="E8BC7B0EFF8AFFD7B8374035FC03B325" bold="true" box="[818,952,1843,1867]" italics="true" pageId="24" pageNumber="427">E. froggattii</emphasis>
|
||
</taxonomicName>
|
||
is the only member of
|
||
<emphasis id="E8BC7B0EFF8AFFD7BFD84035FB48B325" bold="true" box="[1245,1267,1844,1867]" italics="true" pageId="24" pageNumber="427">
|
||
<collectionCode id="BCD93FD9FF8AFFD7BFD84035FB54B325" box="[1245,1263,1844,1867]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15670" name="Royal Botanic Garden Edinburgh" pageId="24" pageNumber="427" type="Herbarium">E</collectionCode>
|
||
.
|
||
</emphasis>
|
||
series
|
||
<taxonomicName id="1DC8DC9FFF8AFFD7BE4E4032FA69B325" box="[1355,1490,1843,1867]" pageId="24" pageNumber="427" rank="series" series="Subbuxeales">
|
||
<emphasis id="E8BC7B0EFF8AFFD7BE4E4032FA69B325" bold="true" box="[1355,1490,1843,1867]" italics="true" pageId="24" pageNumber="427">Subbuxeales</emphasis>
|
||
</taxonomicName>
|
||
with a remote intramarginal vein (
|
||
<bibRefCitation id="BE59DAEDFF8AFFD7BFAE4055FA7AB302" author="Brooker MIH & Nicolle D" box="[1195,1473,1876,1900]" pageId="24" pageNumber="427" refId="ref20404" refString="Brooker MIH, Nicolle D (2013) ' Atlas of leaf venation and oil gland patterns in the eucalypts. ' (CSIRO Publishing: Melbourne, Vic., Australia)" type="book" year="2013">Brooker and Nicolle 2013</bibRefCitation>
|
||
).
|
||
<collectionCode id="BCD93FD9FF8AFFD7B8374075FCF8B3E2" box="[818,835,1908,1932]" country="USA" lsid="urn:lsid:biocol.org:col:15406" name="Harvard University - Arnold Arboretum" pageId="24" pageNumber="427" type="Herbarium">A</collectionCode>
|
||
final trait shared by the other members of
|
||
<emphasis id="E8BC7B0EFF8AFFD7BE6B4075FA3FB3E5" bold="true" box="[1390,1412,1908,1931]" italics="true" pageId="24" pageNumber="427">
|
||
<collectionCode id="BCD93FD9FF8AFFD7BE6B4075FA3BB3E5" box="[1390,1408,1908,1931]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15670" name="Royal Botanic Garden Edinburgh" pageId="24" pageNumber="427" type="Herbarium">E</collectionCode>
|
||
.
|
||
</emphasis>
|
||
series
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6BB6747B5FF5EB4A2" box="[98,229,180,204]" pageId="25" pageNumber="428" rank="series" series="Melliodorae">
|
||
<emphasis id="E8BC7B0EFF8BFFD6BB6747B5FF5EB4A2" bold="true" box="[98,229,180,204]" italics="true" pageId="25" pageNumber="428">Melliodorae</emphasis>
|
||
</taxonomicName>
|
||
we sampled but lacked by
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6B90747B5FDDCB4A5" box="[514,615,180,203]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="25" pageNumber="428" phylum="Tracheophyta" rank="species" species="porosa">
|
||
<emphasis id="E8BC7B0EFF8BFFD6B90747B5FDDCB4A5" bold="true" box="[514,615,180,203]" italics="true" pageId="25" pageNumber="428">E. porosa</emphasis>
|
||
</taxonomicName>
|
||
and two other members of the series we have not sampled (
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6B96947D5FF00B562" authority="F. Muell." authorityName="F. Muell." class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="25" pageNumber="428" phylum="Tracheophyta" rank="species" species="bosistoana">
|
||
<emphasis id="E8BC7B0EFF8BFFD6B96947D5FCB9B485" bold="true" box="[620,770,211,235]" italics="true" pageId="25" pageNumber="428">E. bosistoana</emphasis>
|
||
F.Muell.
|
||
</taxonomicName>
|
||
and
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6BBF347F5FE5CB562" authority="Blakely" authorityName="Blakely" box="[246,487,244,268]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="25" pageNumber="428" phylum="Tracheophyta" rank="species" species="argophloia">
|
||
<emphasis id="E8BC7B0EFF8BFFD6BBF347F5FE31B562" bold="true" box="[246,394,244,268]" italics="true" pageId="25" pageNumber="428">E. argophloia</emphasis>
|
||
Blakely
|
||
</taxonomicName>
|
||
) is a sterile outer ring of stamens, which fits with the placement of
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6B91C4615FDC6B545" box="[537,637,276,299]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="25" pageNumber="428" phylum="Tracheophyta" rank="species" species="porosa">
|
||
<emphasis id="E8BC7B0EFF8BFFD6B91C4615FDC6B545" bold="true" box="[537,637,276,299]" italics="true" pageId="25" pageNumber="428">E. porosa</emphasis>
|
||
</taxonomicName>
|
||
in this study as sister to the rest of the series (
|
||
<figureCitation id="42F3BB99FF8BFFD6BABA4635FE47B522" box="[447,508,308,332]" captionStart="Fig" captionStartId="19.[127,164,1815,1838]" captionTargetBox="[127,1460,186,1784]" captionTargetId="graphics-2@19.[127,934,186,1780]" captionTargetPageId="19" captionText="Fig. 5. Maximum-likelihood phylogeny generated using RAXML, excluding samples with strong evidence for hybridisation and introgression in the combined ddRADseq and DArTseq dataset. Support values on branches are those from the ML and MP analysis, with branches with greater than 80% bootstrapping support in both analyses thickened. Series are labelled as per Nicolle (2019)." figureDoi="http://doi.org/10.5281/zenodo.10974605" httpUri="https://zenodo.org/record/10974605/files/figure.png" pageId="25" pageNumber="428">Fig. 5</figureCitation>
|
||
). Additional support for the placement of
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6BA1C4655FEC5B505" box="[281,382,340,363]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="25" pageNumber="428" phylum="Tracheophyta" rank="species" species="porosa">
|
||
<emphasis id="E8BC7B0EFF8BFFD6BA1C4655FEC5B505" bold="true" box="[281,382,340,363]" italics="true" pageId="25" pageNumber="428">E. porosa</emphasis>
|
||
</taxonomicName>
|
||
in
|
||
<emphasis id="E8BC7B0EFF8BFFD6BA9A4655FE0EB505" bold="true" box="[415,437,340,363]" italics="true" pageId="25" pageNumber="428">
|
||
<collectionCode id="BCD93FD9FF8BFFD6BA9A4655FE0AB505" box="[415,433,340,363]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15670" name="Royal Botanic Garden Edinburgh" pageId="25" pageNumber="428" type="Herbarium">E</collectionCode>
|
||
.
|
||
</emphasis>
|
||
series
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6BAF94655FDC4B502" box="[508,639,340,364]" pageId="25" pageNumber="428" rank="series" series="Melliodorae">
|
||
<emphasis id="E8BC7B0EFF8BFFD6BAF94655FDC4B502" bold="true" box="[508,639,340,364]" italics="true" pageId="25" pageNumber="428">Melliodorae</emphasis>
|
||
</taxonomicName>
|
||
comes from hybrids of
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6BBDC4675FEFBB5E5" box="[217,320,372,395]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="25" pageNumber="428" phylum="Tracheophyta" rank="species" species="porosa">
|
||
<emphasis id="E8BC7B0EFF8BFFD6BBDC4675FEFBB5E5" bold="true" box="[217,320,372,395]" italics="true" pageId="25" pageNumber="428">E. porosa</emphasis>
|
||
</taxonomicName>
|
||
×
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6BA614675FE43B5E2" box="[356,504,372,396]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="25" pageNumber="428" phylum="Tracheophyta" rank="species" species="leucoxylon">
|
||
<emphasis id="E8BC7B0EFF8BFFD6BA614675FE43B5E2" bold="true" box="[356,504,372,396]" italics="true" pageId="25" pageNumber="428">E. leucoxylon</emphasis>
|
||
</taxonomicName>
|
||
being common (
|
||
<bibRefCitation id="BE59DAEDFF8BFFD6B9B04675FF22B5C2" author="Nicolle D" pageId="25" pageNumber="428" refId="ref22263" refString="Nicolle D (2014) Myrtaceae (partly) (version 1). In ' Flora of South Australia. Vol. 5 '. (Ed. J Kellermann) (State Herbarium of South Australia: Adelaide, SA, Australia)" type="book" year="2014">Nicolle 2014</bibRefCitation>
|
||
), but no
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6BBF94695FED9B5C5" box="[252,354,404,427]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="25" pageNumber="428" phylum="Tracheophyta" rank="species" species="porosa">
|
||
<emphasis id="E8BC7B0EFF8BFFD6BBF94695FED9B5C5" bold="true" box="[252,354,404,427]" italics="true" pageId="25" pageNumber="428">E. porosa</emphasis>
|
||
</taxonomicName>
|
||
×
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6BA804695FE4CB5C5" box="[389,503,403,427]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="25" pageNumber="428" phylum="Tracheophyta" rank="species" species="odorata">
|
||
<emphasis id="E8BC7B0EFF8BFFD6BA804695FE4CB5C5" bold="true" box="[389,503,403,427]" italics="true" pageId="25" pageNumber="428">E. odorata</emphasis>
|
||
</taxonomicName>
|
||
complex hybrids having been recorded.
|
||
</paragraph>
|
||
<paragraph id="DA77A71CFF8BFFD6BB8746D5FDF6B062" blockId="25.[98,770,180,1772]" pageId="25" pageNumber="428">
|
||
The seedling of ‘
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6BA3846D5FD71B582" authority="(Mount Jeffcott)" baseAuthorityName="Mount Jeffcott" box="[317,714,468,492]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" isUncertain="true" kingdom="Plantae" order="Myrtales" pageId="25" pageNumber="428" phylum="Tracheophyta" rank="species" species="polybractea">
|
||
<emphasis id="E8BC7B0EFF8BFFD6BA3846D5FEF0B585" bold="true" box="[317,331,468,491]" italics="true" pageId="25" pageNumber="428">E</emphasis>
|
||
. aff.
|
||
<emphasis id="E8BC7B0EFF8BFFD6BA8246D5FDBCB582" bold="true" box="[391,519,468,492]" italics="true" pageId="25" pageNumber="428">polybractea</emphasis>
|
||
(Mount Jeffcott)
|
||
</taxonomicName>
|
||
’ was also part of the
|
||
<emphasis id="E8BC7B0EFF8BFFD6BA1546F5FE9DB665" bold="true" box="[272,294,500,523]" italics="true" pageId="25" pageNumber="428">
|
||
<collectionCode id="BCD93FD9FF8BFFD6BA1546F5FE99B665" box="[272,290,500,523]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15670" name="Royal Botanic Garden Edinburgh" pageId="25" pageNumber="428" type="Herbarium">E</collectionCode>
|
||
.
|
||
</emphasis>
|
||
series
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6BA7746F2FE4EB665" box="[370,501,499,523]" pageId="25" pageNumber="428" rank="series" series="Melliodorae">
|
||
<emphasis id="E8BC7B0EFF8BFFD6BA7746F2FE4EB665" bold="true" box="[370,501,499,523]" italics="true" pageId="25" pageNumber="428">Melliodorae</emphasis>
|
||
</taxonomicName>
|
||
clade in our full dataset phylogeny (
|
||
<figureCitation id="42F3BB99FF8BFFD6BBE54515FEA1B642" box="[224,282,532,556]" captionStart="Fig" captionStartId="18.[180,217,1815,1838]" captionTargetBox="[180,1407,186,1785]" captionTargetId="graphics-2@18.[180,920,186,1771]" captionTargetPageId="18" captionText="Fig. 4. Maximum-likelihood phylogeny generated using RAXML including all samples in the combined ddRADseq and DArTseq dataset. Support values on branches are those from the ML and MP analysis, with branches with greater than 80% bootstrapping support in both analyses thickened. Series are labelled as per Nicolle (2019)." figureDoi="http://doi.org/10.5281/zenodo.10974601" httpUri="https://zenodo.org/record/10974601/files/figure.png" pageId="25" pageNumber="428">Fig. 4</figureCitation>
|
||
). The maternal parent of this seedling is found at Mount Jeffcott within
|
||
<quantity id="1D300AF9FF8BFFD6BA7B4535FE78B622" box="[382,451,564,588]" metricMagnitude="2" metricUnit="m" metricValue="1.0" pageId="25" pageNumber="428" unit="m" value="100.0">100 m</quantity>
|
||
of the only known stand of
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6BB674555FF5DB605" box="[98,230,595,619]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="25" pageNumber="428" phylum="Tracheophyta" rank="species" species="filiformis">
|
||
<emphasis id="E8BC7B0EFF8BFFD6BB674555FF5DB605" bold="true" box="[98,230,595,619]" italics="true" pageId="25" pageNumber="428">E. filiformis</emphasis>
|
||
</taxonomicName>
|
||
, from which it differs primarily in its glaucous juvenile foliage and smooth bark (
|
||
<collectionCode id="BCD93FD9FF8BFFD6BAFA4575FDAFB6E2" box="[511,532,628,652]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15867" name="Royal Botanic Gardens" pageId="25" pageNumber="428" type="Herbarium">K</collectionCode>
|
||
. Rule, pers. comm.,
|
||
<date id="AE7681DCFF8BFFD6BB674595FE86B6C2" box="[98,317,660,684]" pageId="25" pageNumber="428" value="2018-11-22">22 November 2018</date>
|
||
). Of the other
|
||
<emphasis id="E8BC7B0EFF8BFFD6BAE04595FE41B6C5" bold="true" box="[485,506,660,683]" italics="true" pageId="25" pageNumber="428">
|
||
<collectionCode id="BCD93FD9FF8BFFD6BAE04595FE4CB6C5" box="[485,503,660,683]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15670" name="Royal Botanic Garden Edinburgh" pageId="25" pageNumber="428" type="Herbarium">E</collectionCode>
|
||
.
|
||
</emphasis>
|
||
section
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6B95F4595FD72B6C2" box="[602,713,660,684]" pageId="25" pageNumber="428" rank="section" section="Adnataria">
|
||
<emphasis id="E8BC7B0EFF8BFFD6B95F4595FD72B6C2" bold="true" box="[602,713,660,684]" italics="true" pageId="25" pageNumber="428">Adnataria</emphasis>
|
||
</taxonomicName>
|
||
taxa that occur at the site (
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6BA7145B5FDAEB6A2" box="[372,533,692,716]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="25" pageNumber="428" phylum="Tracheophyta" rank="species" species="microcarpa">
|
||
<emphasis id="E8BC7B0EFF8BFFD6BA7145B5FDAEB6A2" bold="true" box="[372,533,692,716]" italics="true" pageId="25" pageNumber="428">E. microcarpa</emphasis>
|
||
</taxonomicName>
|
||
,
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6B92F45B5FD71B6A5" box="[554,714,691,715]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="25" pageNumber="428" phylum="Tracheophyta" rank="species" species="largiflorens">
|
||
<emphasis id="E8BC7B0EFF8BFFD6B92F45B5FD71B6A5" bold="true" box="[554,714,691,715]" italics="true" pageId="25" pageNumber="428">E. largiflorens</emphasis>
|
||
</taxonomicName>
|
||
and
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6BB6745D5FF41B682" box="[98,250,724,748]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="25" pageNumber="428" phylum="Tracheophyta" rank="species" species="leucoxylon">
|
||
<emphasis id="E8BC7B0EFF8BFFD6BB6745D5FF41B682" bold="true" box="[98,250,724,748]" italics="true" pageId="25" pageNumber="428">E. leucoxylon</emphasis>
|
||
</taxonomicName>
|
||
),
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6BA1245D5FE0BB682" box="[279,432,724,748]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="25" pageNumber="428" phylum="Tracheophyta" rank="species" species="leucoxylon">
|
||
<emphasis id="E8BC7B0EFF8BFFD6BA1245D5FE0BB682" bold="true" box="[279,432,724,748]" italics="true" pageId="25" pageNumber="428">E. leucoxylon</emphasis>
|
||
</taxonomicName>
|
||
is by far the most abundant species perhaps explaining why, despite the extensive geneflow between
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6BBFA4415FE20B742" box="[255,411,788,812]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="25" pageNumber="428" phylum="Tracheophyta" rank="species" species="microcarpa">
|
||
<emphasis id="E8BC7B0EFF8BFFD6BBFA4415FE20B742" bold="true" box="[255,411,788,812]" italics="true" pageId="25" pageNumber="428">E. microcarpa</emphasis>
|
||
</taxonomicName>
|
||
and members of the
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6B9894415FCBAB745" box="[652,769,787,811]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="25" pageNumber="428" phylum="Tracheophyta" rank="species" species="odorata">
|
||
<emphasis id="E8BC7B0EFF8BFFD6B9894415FCBAB745" bold="true" box="[652,769,787,811]" italics="true" pageId="25" pageNumber="428">E. odorata</emphasis>
|
||
</taxonomicName>
|
||
complex in the Wimmera, our results, both the phylogeny (
|
||
<figureCitation id="42F3BB99FF8BFFD6BB6E4455FF1CB702" box="[107,167,852,876]" captionStart="Fig" captionStartId="18.[180,217,1815,1838]" captionTargetBox="[180,1407,186,1785]" captionTargetId="graphics-2@18.[180,920,186,1771]" captionTargetPageId="18" captionText="Fig. 4. Maximum-likelihood phylogeny generated using RAXML including all samples in the combined ddRADseq and DArTseq dataset. Support values on branches are those from the ML and MP analysis, with branches with greater than 80% bootstrapping support in both analyses thickened. Series are labelled as per Nicolle (2019)." figureDoi="http://doi.org/10.5281/zenodo.10974601" httpUri="https://zenodo.org/record/10974601/files/figure.png" pageId="25" pageNumber="428">Fig. 4</figureCitation>
|
||
) and ABBA-BABA tests (
|
||
<tableCitation id="974A92A7FF8BFFD6BAAB4455FE45B702" box="[430,510,852,876]" captionStart="Table 4" captionStartId="21.[153,217,396,419]" captionTargetPageId="21" captionText="Table 4. Results of ABBA-BABA tests for hybridisation and introgression among taxa and samples utilising the ipyrad toolbox." httpUri="http://table.plazi.org/id/8EB7F794FF87FFDABB9C468DFA34B5CD" pageId="25" pageNumber="428" tableUuid="8EB7F794FF87FFDABB9C468DFA34B5CD">Table 4</tableCitation>
|
||
), showed that this seedling is a
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6BBC74475FEFFB7E5" box="[194,324,883,907]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="25" pageNumber="428" phylum="Tracheophyta" rank="species" species="filiformis">
|
||
<emphasis id="E8BC7B0EFF8BFFD6BBC74475FEFFB7E5" bold="true" box="[194,324,883,907]" italics="true" pageId="25" pageNumber="428">E. filiformis</emphasis>
|
||
</taxonomicName>
|
||
×
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6BA624475FE4FB7E5" box="[359,500,883,907]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="25" pageNumber="428" phylum="Tracheophyta" rank="species" species="leucoxylon">
|
||
<emphasis id="E8BC7B0EFF8BFFD6BA624475FE4FB7E5" bold="true" box="[359,500,883,907]" italics="true" pageId="25" pageNumber="428">E leucoxylon</emphasis>
|
||
</taxonomicName>
|
||
hybrid. This finding fits with the observations of its morphology (
|
||
<collectionCode id="BCD93FD9FF8BFFD6B90A4495FD9FB7C2" box="[527,548,916,940]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15867" name="Royal Botanic Gardens" pageId="25" pageNumber="428" type="Herbarium">K</collectionCode>
|
||
. Rule, pers. comm.,
|
||
<date id="AE7681DCFF8BFFD6B9F64495FEBAB7A2" pageId="25" pageNumber="428" value="2021-02-03">3 February 2021</date>
|
||
), although, because we did not sample the maternal parent tree, we cannot say if it is also a
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6B91844D5FD15B785" box="[541,686,979,1003]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="25" pageNumber="428" phylum="Tracheophyta" rank="species" species="leucoxylon">
|
||
<emphasis id="E8BC7B0EFF8BFFD6B91844D5FD15B785" bold="true" box="[541,686,979,1003]" italics="true" pageId="25" pageNumber="428">E. leucoxylon</emphasis>
|
||
</taxonomicName>
|
||
hybrid, potentially explaining its unique morphology.
|
||
</paragraph>
|
||
<paragraph id="DA77A71CFF8BFFD6BB874315FE56B282" blockId="25.[98,770,180,1772]" pageId="25" pageNumber="428">
|
||
The two clades within
|
||
<emphasis id="E8BC7B0EFF8BFFD6BA8C4315FE24B045" bold="true" box="[393,415,1044,1067]" italics="true" pageId="25" pageNumber="428">
|
||
<collectionCode id="BCD93FD9FF8BFFD6BA8C4315FE20B045" box="[393,411,1044,1067]" country="United Kingdom" lsid="urn:lsid:biocol.org:col:15670" name="Royal Botanic Garden Edinburgh" pageId="25" pageNumber="428" type="Herbarium">E</collectionCode>
|
||
.
|
||
</emphasis>
|
||
series
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6BAF54315FDCCB042" box="[496,631,1044,1068]" pageId="25" pageNumber="428" rank="series" series="Subbuxeales">
|
||
<emphasis id="E8BC7B0EFF8BFFD6BAF54315FDCCB042" bold="true" box="[496,631,1044,1068]" italics="true" pageId="25" pageNumber="428">Subbuxeales</emphasis>
|
||
</taxonomicName>
|
||
(
|
||
<figureCitation id="42F3BB99FF8BFFD6B98F4315FD70B042" box="[650,715,1044,1068]" captionStart="Fig" captionStartId="19.[127,164,1815,1838]" captionTargetBox="[127,1460,186,1784]" captionTargetId="graphics-2@19.[127,934,186,1780]" captionTargetPageId="19" captionText="Fig. 5. Maximum-likelihood phylogeny generated using RAXML, excluding samples with strong evidence for hybridisation and introgression in the combined ddRADseq and DArTseq dataset. Support values on branches are those from the ML and MP analysis, with branches with greater than 80% bootstrapping support in both analyses thickened. Series are labelled as per Nicolle (2019)." figureDoi="http://doi.org/10.5281/zenodo.10974605" httpUri="https://zenodo.org/record/10974605/files/figure.png" pageId="25" pageNumber="428">Fig. 5</figureCitation>
|
||
) are supported by morphology, as the typically single-trunked grey-box species and mallee box species
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6BAF14355FD09B002" box="[500,690,1108,1132]" form="reciprocally" pageId="25" pageNumber="428" rank="form">form reciprocally</taxonomicName>
|
||
monophyletic clades. This is in line with previous studies that have shown that the mallee growth
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6BAC74395FD8BB0C2" box="[450,560,1172,1196]" form="may" pageId="25" pageNumber="428" rank="form">form may</taxonomicName>
|
||
be tied to genetic lineages in other eucalypt groups (
|
||
<bibRefCitation id="BE59DAEDFF8BFFD6BAF443B5FD49B0A2" author="Hines B & Byrne M" box="[497,754,1204,1228]" pageId="25" pageNumber="428" pagination="566 - 572" refId="ref21086" refString="Hines B, Byrne M (2001) Genetic differentiation between mallee and tree forms in the Eucalyptus loxophleba complex. Heredity 87, 566 - 572. doi: 10.1046 / j. 1365 - 2540.2001.00950. x" type="journal article" year="2001">Hines and Byrne 2001</bibRefCitation>
|
||
). Although grey boxes are very morphologically similar and establishing geographic boundaries among the taxa are difficult because they intergrade with one another (
|
||
<bibRefCitation id="BE59DAEDFF8BFFD6B9874215FD40B142" author="Bean AR" box="[642,763,1300,1324]" pageId="25" pageNumber="428" pagination="25 - 34" refId="ref20245" refString="Bean AR (2009) Taxonomic and nomenclatural notes on the Eastern grey boxes (Eucalyptus ser. Moluccanae Chippendale, Myrtaceae) and the reinstatement of Eucalyptus woollsiana R. T. Baker. Austrobaileya 8, 25 - 34." type="journal article" year="2009">Bean 2009</bibRefCitation>
|
||
;
|
||
<bibRefCitation id="BE59DAEDFF8BFFD6BB674235FE3FB122" author="Flores-Renteria L & Rymer PD & Riegler M" box="[98,388,1332,1356]" pageId="25" pageNumber="428" pagination="70 - 87" refId="ref20809" refString="Flores-Renteria L, Rymer PD, Riegler M (2017) Unpacking boxes: integration of molecular, morphological and ecological approaches reveals extensive patterns of reticulate evolution in box eucalypts. Molecular Phylogenetics and Evolution 108, 70 - 87. doi: 10.1016 / j. ympev. 2017.01.019" type="journal article" year="2017">
|
||
Flores-Rentería
|
||
<emphasis id="E8BC7B0EFF8BFFD6BA084235FEFFB122" bold="true" box="[269,324,1332,1356]" italics="true" pageId="25" pageNumber="428">et al.</emphasis>
|
||
2017
|
||
</bibRefCitation>
|
||
),
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6BA9E4235FDF1B122" box="[411,586,1332,1356]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="25" pageNumber="428" phylum="Tracheophyta" rank="species" species="albopurpurea">
|
||
<emphasis id="E8BC7B0EFF8BFFD6BA9E4235FDF1B122" bold="true" box="[411,586,1332,1356]" italics="true" pageId="25" pageNumber="428">E. albopurpurea</emphasis>
|
||
</taxonomicName>
|
||
and
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6B9844235FCBAB122" box="[641,769,1332,1356]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="25" pageNumber="428" phylum="Tracheophyta" rank="species" species="froggattii">
|
||
<emphasis id="E8BC7B0EFF8BFFD6B9844235FCBAB122" bold="true" box="[641,769,1332,1356]" italics="true" pageId="25" pageNumber="428">E. froggattii</emphasis>
|
||
</taxonomicName>
|
||
have not previously been hypothesised to be closely related in the literature.
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6BA1D4275FD8EB1E2" box="[280,565,1396,1420]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="25" pageNumber="428" phylum="Tracheophyta" rank="species" species="albopurpurea">
|
||
<emphasis id="E8BC7B0EFF8BFFD6BA1D4275FD8EB1E2" bold="true" box="[280,565,1396,1420]" italics="true" pageId="25" pageNumber="428">Eucalyptus albopurpurea</emphasis>
|
||
</taxonomicName>
|
||
has often been regarded as more morphologically similar to members of the
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6BB6742B5FF68B1A5" box="[98,211,1459,1483]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="25" pageNumber="428" phylum="Tracheophyta" rank="species" species="odorata">
|
||
<emphasis id="E8BC7B0EFF8BFFD6BB6742B5FF68B1A5" bold="true" box="[98,211,1459,1483]" italics="true" pageId="25" pageNumber="428">E. odorata</emphasis>
|
||
</taxonomicName>
|
||
complex, in particular
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6BACB42B5FD84B1A5" box="[462,575,1459,1483]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="25" pageNumber="428" phylum="Tracheophyta" rank="species" species="odorata">
|
||
<emphasis id="E8BC7B0EFF8BFFD6BACB42B5FD84B1A5" bold="true" box="[462,575,1459,1483]" italics="true" pageId="25" pageNumber="428">E. odorata</emphasis>
|
||
</taxonomicName>
|
||
itself, with which it intergrades with on Kangaroo Island (
|
||
<bibRefCitation id="BE59DAEDFF8BFFD6B91B42D5FD10B182" author="Nicolle D" box="[542,683,1492,1516]" pageId="25" pageNumber="428" pagination="83 - 94" refId="ref22206" refString="Nicolle D (2000) New taxa of Eucalyptus informal subgenus Symphyomyrtus (Myrtaceae), endemic to South Australia. Journal of the Adelaide Botanic Garden 19, 83 - 94." type="journal article" year="2000">Nicolle 2000</bibRefCitation>
|
||
,
|
||
<bibRefCitation id="BE59DAEDFF8BFFD6B9BF42D5FD49B182" author="Nicolle D" box="[698,754,1492,1516]" pageId="25" pageNumber="428" refId="ref22263" refString="Nicolle D (2014) Myrtaceae (partly) (version 1). In ' Flora of South Australia. Vol. 5 '. (Ed. J Kellermann) (State Herbarium of South Australia: Adelaide, SA, Australia)" type="book" year="2014">2014</bibRefCitation>
|
||
), than to
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6BBB242F5FE8CB262" box="[183,311,1524,1548]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="25" pageNumber="428" phylum="Tracheophyta" rank="species" species="froggattii">
|
||
<emphasis id="E8BC7B0EFF8BFFD6BBB242F5FE8CB262" bold="true" box="[183,311,1524,1548]" italics="true" pageId="25" pageNumber="428">E. froggattii</emphasis>
|
||
</taxonomicName>
|
||
, which is set apart morphologically by its square buds and fruits (
|
||
<bibRefCitation id="BE59DAEDFF8BFFD6BA6D4115FDFBB242" author="Brooker MIH & Slee AV & Connors JR & Duffy S & West J" box="[360,576,1555,1580]" pageId="25" pageNumber="428" refId="ref20437" refString="Brooker MIH, Slee AV, Connors JR, Duffy S, West J (2015) ' EUCLID: eucalypts of Australia', 4 th edn. (CSIRO: Canberra, ACT, Australia)" type="book" year="2015">
|
||
Brooker
|
||
<emphasis id="E8BC7B0EFF8BFFD6BAC24115FE44B245" bold="true" box="[455,511,1555,1579]" italics="true" pageId="25" pageNumber="428">et al.</emphasis>
|
||
2015
|
||
</bibRefCitation>
|
||
). However, these two species do have morphological similarities not shared by the members of the
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6BA394155FE15B205" box="[316,430,1619,1643]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="25" pageNumber="428" phylum="Tracheophyta" rank="species" species="odorata">
|
||
<emphasis id="E8BC7B0EFF8BFFD6BA394155FE15B205" bold="true" box="[316,430,1619,1643]" italics="true" pageId="25" pageNumber="428">E. odorata</emphasis>
|
||
</taxonomicName>
|
||
complex, including apparently terminal compound inflorescences, generally broader leaves, and slightly larger buds and fruit (
|
||
<bibRefCitation id="BE59DAEDFF8BFFD6BAD94195FD0AB2C2" author="Brooker MIH & Slee AV & Connors JR & Duffy S & West J" box="[476,689,1684,1708]" pageId="25" pageNumber="428" refId="ref20437" refString="Brooker MIH, Slee AV, Connors JR, Duffy S, West J (2015) ' EUCLID: eucalypts of Australia', 4 th edn. (CSIRO: Canberra, ACT, Australia)" type="book" year="2015">
|
||
Brooker
|
||
<emphasis id="E8BC7B0EFF8BFFD6B93F4195FDCAB2C2" bold="true" box="[570,625,1684,1708]" italics="true" pageId="25" pageNumber="428">et al.</emphasis>
|
||
2015
|
||
</bibRefCitation>
|
||
). More work is needed to clarify the relationship between these two species and the
|
||
<taxonomicName id="1DC8DC9FFF8BFFD6BA0B41D5FE3AB285" box="[270,385,1747,1771]" class="Magnoliopsida" family="Myrtaceae" genus="Eucalyptus" kingdom="Plantae" order="Myrtales" pageId="25" pageNumber="428" phylum="Tracheophyta" rank="species" species="odorata">
|
||
<emphasis id="E8BC7B0EFF8BFFD6BA0B41D5FE3AB285" bold="true" box="[270,385,1747,1771]" italics="true" pageId="25" pageNumber="428">E. odorata</emphasis>
|
||
</taxonomicName>
|
||
complex.
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |