216 lines
22 KiB
XML
216 lines
22 KiB
XML
<document id="6146C36F388A84040C09EFB2BABA0E0B" ID-DOI="10.1099/ijsem.0.004107" ID-ISSN="1466-5034" ID-Zenodo-Dep="10114954" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.taxonomicNames_approvedBy="felipe" checkinTime="1644597203828" checkinUser="felipe" docAuthor="Zheng, Jinshui, Wittouck, Stijn, Salvetti, Elisa, Franz, Charles M. A. P., Harris, Hugh M. B., Mattarelli, Paola, O’Toole, Paul W., Pot, Bruno, Vandamme, Peter, Walter, Jens, Watanabe, Koichi, Wuyts, Sander, Felis, Giovanna E., Gänzle, Michael G. & Lebeer, Sarah" docDate="2020" docId="0389878AFFB92145D94EFAD5FA93603A" docLanguage="en" docName="IntJSystEvolMicrobiol.70.4.2782-2858.pdf" docOrigin="International Journal of Systematic and Evolutionary Microbiology 70 (4)" docSource="http://dx.doi.org/10.1099/ijsem.0.004107" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.3:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="3" docTitle="Secundilactobacillus Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer 2020, GEN. NOV." docType="treatment" docVersion="6" lastPageNumber="2834" masterDocId="FFB0FFF2FF8D2171D937FF96FFAF6267" masterDocTitle="A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae" masterLastPageNumber="2858" masterPageNumber="2782" pageNumber="2834" updateTime="1700041747501" updateUser="ExternalLinkService">
|
||
<mods:mods id="73139B6BD228FF7602224568E7EEECFE" xmlns:mods="http://www.loc.gov/mods/v3">
|
||
<mods:titleInfo id="DC737A94CDFD8EA2E30131AB2B1B1C11">
|
||
<mods:title id="D132828C4B607631056D3E068B1FA1B9">A taxonomic note on the genus Lactobacillus: Description of 23 novel genera, emended description of the genus Lactobacillus Beijerinck 1901, and union of Lactobacillaceae and Leuconostocaceae</mods:title>
|
||
</mods:titleInfo>
|
||
<mods:name id="279AC6FF5D0DBF41252BC5E57F4E7C70" type="personal">
|
||
<mods:role id="D745D52485CA6280AE42DDF4EF43D024">
|
||
<mods:roleTerm id="644B6179863072C8997B88239AC1C479">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="550249DE78A333CC5A6BEA0165F8E145">Zheng, Jinshui</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="96DC035408D034D249B278719A8955B6" type="personal">
|
||
<mods:role id="05265C0B2C48DAA1E851B0E509FEDDFB">
|
||
<mods:roleTerm id="1A97339321FA3F09533805A922B4EA78">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="35156C49A6B1EFAE406B17EB746042C6">Wittouck, Stijn</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="B908E25E3CD9E10AE9633782D5979E18" type="personal">
|
||
<mods:role id="D01EA60A1E26DDBE588F65AC582A91C0">
|
||
<mods:roleTerm id="75720FD0EDECD5B2AA14C53B7E1FC5E9">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="FF5B86E48B3AB39CF22C77E7AD9D97CC">Salvetti, Elisa</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="5D67FB127208CAE0A5CA65D4B6282FE4" type="personal">
|
||
<mods:role id="CF4124BDF30F82F49463516055E799F9">
|
||
<mods:roleTerm id="EF8596D02A19A0ACBC04E6E111DF9BFF">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="8BC98FC402DA712283082CDE6063E018">Franz, Charles M. A. P.</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="E9534000CCAA25152D1ED6EB191A8543" type="personal">
|
||
<mods:role id="C447ED47D5A9DEFAB38182385A595185">
|
||
<mods:roleTerm id="8D4AF3FB462C511D827AD06B97BF8F8D">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="27DD2854FD724C800093AA7452441927">Harris, Hugh M. B.</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="B1F882ED810A4C612E22B2510E2D2F05" type="personal">
|
||
<mods:role id="AB9655332863DD941E081002779B85A1">
|
||
<mods:roleTerm id="2B4E7B9A8E76BC1A82C253284AA45E4E">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="AB2224B2FB76A4960D40180280229AB9">Mattarelli, Paola</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="5F13CD70E904229CE5097BCA74B87866" type="personal">
|
||
<mods:role id="F53D0448FB4B17F713A531A43BB408F4">
|
||
<mods:roleTerm id="15745DF6CA015449576B36A313C18B36">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="F4AFC8079C4057C87401B896FFA08060">O’Toole, Paul W.</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="D6BC0E88CA9646EAC152C093D956B7DE" type="personal">
|
||
<mods:role id="66FCFB67D2DA28336BB9978ED281939A">
|
||
<mods:roleTerm id="6734EF6D49A4C09292A2A85A38C875B3">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="51AB35E2BD62C5EF34EBD7E48198A003">Pot, Bruno</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="321E9D3A4F73AAE0A4B1E99C149FCCE9" type="personal">
|
||
<mods:role id="274110643FCFF9A20E738B3C08B2702C">
|
||
<mods:roleTerm id="B4DF0590E8130FC67999107A0B1FDDFE">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="4CCF9891AAF70F3E8AD3BC4AF5898D70">Vandamme, Peter</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="3B4210282D9404B43AEFB2BD2AD14ACF" type="personal">
|
||
<mods:role id="71305EDEC7FA964DA6FA53A8AFB275CB">
|
||
<mods:roleTerm id="7DE4E9397AF1094818E5CB97180D5663">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="66E67C7CE0F9102F69F81DC0CE092ADF">Walter, Jens</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="F3C9EA2D80CC9E63EAC8C6F5EC8AD06F" type="personal">
|
||
<mods:role id="719E2E1BA00EF1560E8B5EC9E2A1CF2C">
|
||
<mods:roleTerm id="E80B5DAA34E41ABB31E5496959F12188">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="3851E07EDD8C9A6AF79EA1DA663A4680">Watanabe, Koichi</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="A4B59BF4D55601DCDFD301A3D8750D0B" type="personal">
|
||
<mods:role id="CD17CBE3B6792E67F09BB00EAC3E0E9C">
|
||
<mods:roleTerm id="43BD3CA078A262A481201084EA70FDBB">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="7B8A7B4184576AB17AB3DCBE0839C505">Wuyts, Sander</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="F7265A97E36C022BAD61D4BEBDFFF210" type="personal">
|
||
<mods:role id="4EE1DC588F2EE61727FA13D28DE00F11">
|
||
<mods:roleTerm id="D94327749D0B581FDDA72711B5AA5D3B">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="80A1B59592D35BCB4571571E1492D928">Felis, Giovanna E.</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="961F4B337BD5A1A00A5C5412A10891DF" type="personal">
|
||
<mods:role id="40FA9ECF707EE75554F497DC67662231">
|
||
<mods:roleTerm id="7F0ACD3222348F80B179608CAE6B8B7F">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="89C4D9CDA59B566D18011934CAB2C83C">Gänzle, Michael G.</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="D947838925795500262F65755E922B9B" type="personal">
|
||
<mods:role id="ED20A7AD60E5F5D42C74C8D840250B5A">
|
||
<mods:roleTerm id="78E245B2D77B1C004AE51078035B3F86">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="90BEF8164EC17E207C193ABA3257BBAF">Lebeer, Sarah</mods:namePart>
|
||
</mods:name>
|
||
<mods:typeOfResource id="F8A95F8FEBF323A416A59609927AE3EF">text</mods:typeOfResource>
|
||
<mods:relatedItem id="C6CB8F4075DF0574002734CE70E147AF" type="host">
|
||
<mods:titleInfo id="204401B4729C0E6886EAA21ED5341B1B">
|
||
<mods:title id="F579FFD3BD201B3499A2F7E5A6031F9A">International Journal of Systematic and Evolutionary Microbiology</mods:title>
|
||
</mods:titleInfo>
|
||
<mods:part id="497AAC14DF2024AEDECB146E3E22AAD9">
|
||
<mods:date id="BE371597F3BA72AAFF9AB29DAEBA2322">2020</mods:date>
|
||
<mods:detail id="D591CFF817BE90BB54999547EDF09722" type="pubDate">
|
||
<mods:number id="95818DF774ABC1A00458CB5F7E6F0E4A">2020-04-01</mods:number>
|
||
</mods:detail>
|
||
<mods:detail id="03D82651C3B7D92D8ED14FFFB029CE75" type="volume">
|
||
<mods:number id="3C603B5FBE65B7EDB262EE78771C1A7B">70</mods:number>
|
||
</mods:detail>
|
||
<mods:detail id="BA54775A52881EDE917C5FF1F8FEDCE1" type="issue">
|
||
<mods:number id="CC83F06097C434F4026F0D415EFD48C7">4</mods:number>
|
||
</mods:detail>
|
||
<mods:extent id="118DD08B74D7E346FCEEBD0F2D19BAC6" unit="page">
|
||
<mods:start id="4807CFBA9B45201E2B37BB5E5CBA0A66">2782</mods:start>
|
||
<mods:end id="B48665EA00345C44BEF0B50FBC710C4B">2858</mods:end>
|
||
</mods:extent>
|
||
</mods:part>
|
||
</mods:relatedItem>
|
||
<mods:location id="DDD6DE2C4187893ECC2F970DA3273C61">
|
||
<mods:url id="65D29BA576969A6497423E1FD91E6682">http://dx.doi.org/10.1099/ijsem.0.004107</mods:url>
|
||
</mods:location>
|
||
<mods:classification id="53B5F31EC406F5F3741CA991B576AB78">journal article</mods:classification>
|
||
<mods:identifier id="3AD0F509AA9E0696108DB03ED3366F4A" type="DOI">10.1099/ijsem.0.004107</mods:identifier>
|
||
<mods:identifier id="46F3651B712400F7449CECA76CF79537" type="ISSN">1466-5034</mods:identifier>
|
||
<mods:identifier id="5E0DE5C2399BFC5ACEB4B21962B0ECDA" type="Zenodo-Dep">10114954</mods:identifier>
|
||
</mods:mods>
|
||
<treatment id="0389878AFFB92145D94EFAD5FA93603A" ID-DOI="http://doi.org/10.5281/zenodo.6309983" ID-Zenodo-Dep="6309983" LSID="urn:lsid:plazi:treatment:0389878AFFB92145D94EFAD5FA93603A" httpUri="http://treatment.plazi.org/id/0389878AFFB92145D94EFAD5FA93603A" lastPageNumber="2834" pageId="52" pageNumber="2834">
|
||
<subSubSection id="C33A6517FFB92145D94EFAD5FEA967E2" pageId="52" pageNumber="2834" type="nomenclature">
|
||
<paragraph id="8B9F369CFFB92145D94EFAD5FEA967E2" blockId="52.[120,766,1347,1956]" pageId="52" pageNumber="2834">
|
||
<heading id="D0D781F0FFB92145D94EFAD5FEA967E2" allCaps="true" bold="true" fontSize="12" level="2" pageId="52" pageNumber="2834" reason="3">
|
||
<emphasis id="B954EA8EFFB92145D94EFAD5FEA967E2" bold="true" pageId="52" pageNumber="2834">
|
||
DESCRIPTION OF
|
||
<taxonomicName id="4C204D1FFFB92145D845FAD5FD7F6707" authority="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer, 2020" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" box="[370,720,1347,1376]" class="Bacilli" family="Lactobacillaceae" genus="Secundilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="52" pageNumber="2834" phylum="Firmicutes" rank="genus" status="gen. nov.">
|
||
<emphasis id="B954EA8EFFB92145D845FAD5FD7F6707" bold="true" box="[370,720,1347,1376]" italics="true" pageId="52" pageNumber="2834">SECUNDILACTOBACILLUS</emphasis>
|
||
</taxonomicName>
|
||
<taxonomicNameLabel id="A26757F5FFB92145D94EFAFEFEA967E2" box="[121,262,1384,1413]" pageId="52" pageNumber="2834" rank="genus">GEN. NOV.</taxonomicNameLabel>
|
||
</emphasis>
|
||
</heading>
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="C33A6517FFB92145D94EFA04FE306424" pageId="52" pageNumber="2834" type="etymology">
|
||
<paragraph id="8B9F369CFFB92145D94EFA04FE306424" blockId="52.[120,766,1347,1956]" pageId="52" pageNumber="2834">
|
||
<taxonomicName id="4C204D1FFFB92145D94EFA04FEFF67CD" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" box="[121,336,1426,1450]" class="Bacilli" family="Lactobacillaceae" genus="Secundilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="52" pageNumber="2834" phylum="Firmicutes" rank="genus">
|
||
<emphasis id="B954EA8EFFB92145D94EFA04FEFF67CD" box="[121,336,1426,1450]" italics="true" pageId="52" pageNumber="2834">Secundilactobacillus</emphasis>
|
||
</taxonomicName>
|
||
(Se.cun.di.lac.to.ba.cil’lus. L. adj.
|
||
<emphasis id="B954EA8EFFB92145D94EFA27FF7867AE" box="[121,215,1457,1481]" italics="true" pageId="52" pageNumber="2834">secundus</emphasis>
|
||
, second or next, following; N.L. masc. n.
|
||
<taxonomicName id="4C204D1FFFB92145DBACFA27FF016780" authorityName="Beijerinck" authorityYear="1901" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="52" pageNumber="2834" phylum="Firmicutes" rank="genus">
|
||
<emphasis id="B954EA8EFFB92145DBACFA27FF016780" italics="true" pageId="52" pageNumber="2834">Lactobacillus</emphasis>
|
||
</taxonomicName>
|
||
a bacterial genus name; N.L. masc. n.
|
||
<taxonomicName id="4C204D1FFFB92145DB65FA59FF016461" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" class="Bacilli" family="Lactobacillaceae" genus="Secundilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="52" pageNumber="2834" phylum="Firmicutes" rank="genus">
|
||
<emphasis id="B954EA8EFFB92145DB65FA59FF016461" italics="true" pageId="52" pageNumber="2834">Secundilactobacillus</emphasis>
|
||
</taxonomicName>
|
||
a lactobacillus that occurs in a secondary fermentation or as a spoilage organism after primary fermenters depleted hexoses and disaccharides).
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="C33A6517FFB92145D94EF9CFFA2363E0" pageId="52" pageNumber="2834" type="description">
|
||
<paragraph id="8B9F369CFFB92145D94EF9CFFA2363E0" blockId="52.[120,766,1347,1956]" lastBlockId="52.[826,1467,183,605]" pageId="52" pageNumber="2834">
|
||
Gram-positive, rod-shaped, catalase negative, heterofermentative. Most strains grow at 15 °C and some also grow at 45 °C, the pH range of growth is highly variable. The genome size ranges from 1.85 Mbp for
|
||
<taxonomicName id="4C204D1FFFB92145D8A4F920FE5D64AA" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" box="[403,498,1718,1741]" class="Bacilli" family="Lactobacillaceae" genus="Secundilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="52" pageNumber="2834" phylum="Firmicutes" rank="species" species="oryzae">
|
||
<emphasis id="B954EA8EFFB92145D8A4F920FE5D64AA" box="[403,498,1718,1741]" italics="true" pageId="52" pageNumber="2834">S. oryzae</emphasis>
|
||
</taxonomicName>
|
||
to 3.62 Mbp for
|
||
<taxonomicName id="4C204D1FFFB92145DB9CF920FF14648B" class="Bacilli" family="Leuconostocaceae" genus="Leuconostoc" kingdom="Bacteria" order="Lactobacillales" pageId="52" pageNumber="2834" phylum="Firmicutes" rank="species" species="collinoides">
|
||
<emphasis id="B954EA8EFFB92145DB9CF920FF14648B" italics="true" pageId="52" pageNumber="2834">S. collinoides</emphasis>
|
||
</taxonomicName>
|
||
, the mol% G+C content of DNA ranges from 41.03–47 %. Strains in the genus lead a free-living lifestyle and were isolated as secondary fermentation or spoilage organisms from hexose-depleted habitats including silage, beer, liquor mashes and apple cider. Metabolic properties of
|
||
<taxonomicName id="4C204D1FFFB92145DB59F8D9FEB965E2" pageId="52" pageNumber="2834">
|
||
<emphasis id="B954EA8EFFB92145DB59F8D9FF6865E2" italics="true" pageId="52" pageNumber="2834">Secundilactobacillus</emphasis>
|
||
species
|
||
</taxonomicName>
|
||
match adaptation to hexose-depleted habitats. Many strains of the genus do not reduce fructose to mannitol, a trait which differentiates
|
||
<taxonomicName id="4C204D1FFFB92145DD66FF21FA8C62A8" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" box="[1105,1315,183,207]" class="Bacilli" family="Lactobacillaceae" genus="Secundilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="52" pageNumber="2834" phylum="Firmicutes" rank="genus">
|
||
<emphasis id="B954EA8EFFB92145DD66FF21FA8C62A8" box="[1105,1315,183,207]" italics="true" pageId="52" pageNumber="2834">Secundilactobacillus</emphasis>
|
||
</taxonomicName>
|
||
from all other heterofermentative lactobacilli except
|
||
<taxonomicName id="4C204D1FFFB92145DDC3FF43FA1C628A" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" box="[1268,1459,213,237]" class="Bacilli" family="Lactobacillaceae" genus="Paucilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="52" pageNumber="2834" phylum="Firmicutes" rank="genus">
|
||
<emphasis id="B954EA8EFFB92145DDC3FF43FA1C628A" box="[1268,1459,213,237]" italics="true" pageId="52" pageNumber="2834">Paucilactobacillus</emphasis>
|
||
</taxonomicName>
|
||
. Many strains in the genus metabolize diols via diol-hydratase and convert agmatine, a metabolite of arginine decarboxylation, via the agmatine deiminase pathway. Strains in the genus generally harbour genes coding for transaldolase/transketolase which mediate metabolism of pentoses to pyruvate.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="C33A6517FFB92145DA0BFE0BFCC06395" pageId="52" pageNumber="2834" type="discussion">
|
||
<paragraph id="8B9F369CFFB92145DA0BFE0BFCC06395" blockId="52.[826,1467,183,605]" pageId="52" pageNumber="2834">
|
||
A phylogenetic tree on the basis of 16S rRNA genes of all species in the genus
|
||
<taxonomicName id="4C204D1FFFB92145DD2AFE2DFB5F63B4" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" box="[1053,1264,443,467]" class="Bacilli" family="Lactobacillaceae" genus="Secundilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="52" pageNumber="2834" phylum="Firmicutes" rank="genus">
|
||
<emphasis id="B954EA8EFFB92145DD2AFE2DFB5F63B4" box="[1053,1264,443,467]" italics="true" pageId="52" pageNumber="2834">Secundilactobacillus</emphasis>
|
||
</taxonomicName>
|
||
is provided in
|
||
<figureCitation id="131B2A19FFB92145DCA4FE2DFCC46395" captionStart="Fig" captionStartId="7.[185,216,1617,1636]" captionTargetBox="[264,1323,181,1565]" captionTargetId="figure-17@7.[264,1323,181,1565]" captionTargetPageId="7" captionText="Fig. 6. Gene family presence/absence patterns in Lactobacillaceae and Leuconostocaceae. Each column represents a gene family presence/absence pattern in species of Lactobacillaceae and Leuconostoaceae, where presence is indicated with a dot. The absolute number of gene families that conform to each pattern is visualized in the marginal bar plot at the top. Separations between phylogroups are indicated with horizontal black lines. We defined genes that were present in all genomes of a clade and in none of the genomes outside of that clade as ‘signature genes’ (dark blue); other genes are shown in light blue. Only presence/absence patterns followed by four or more gene families are shown. Patterns of presence in a single species or all species are not shown. Unassigned species are clusters of closely related genomes which could not be assigned to a known species due to low whole-genome similarity to a type strain and/or low 16S rRNA similarity to a type strain." figureDoi="http://doi.org/10.5281/zenodo.10133304" httpUri="https://zenodo.org/record/10133304/files/figure.png" pageId="52" pageNumber="2834">Fig. S6O</figureCitation>
|
||
.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="C33A6517FFB92145DA0BFD91FA93603A" pageId="52" pageNumber="2834" type="type_taxon">
|
||
<paragraph id="8B9F369CFFB92145DA0BFD91FA93603A" blockId="52.[826,1467,183,605]" pageId="52" pageNumber="2834">
|
||
The
|
||
<typeStatus id="549B883EFFB92145DA5BFD9EFC346047" box="[876,923,520,544]" pageId="52" pageNumber="2834">type</typeStatus>
|
||
species of the genus is
|
||
<taxonomicName id="4C204D1FFFB92145DD97FD91FC1D6059" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" baseAuthorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" baseAuthorityYear="2020" class="Bacilli" family="Lactobacillaceae" genus="Secundilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="52" pageNumber="2834" phylum="Firmicutes" rank="species" species="malefermentans" status="comb. nov.">
|
||
<emphasis id="B954EA8EFFB92145DD97FD91FC1D6059" italics="true" pageId="52" pageNumber="2834">Secundilactobacillus malefermentans</emphasis>
|
||
</taxonomicName>
|
||
<taxonomicNameLabel id="A26757F5FFB92145DA8EFDB0FB9D6059" box="[953,1074,550,574]" pageId="52" pageNumber="2834" rank="species">comb. nov.</taxonomicNameLabel>
|
||
;
|
||
<taxonomicName id="4C204D1FFFB92145DD09FDB0FABC6059" authorityName="Zheng & Wittouck & Salvetti & Franz & Harris & Mattarelli & O’Toole & Pot & Vandamme & Walter & Watanabe & Wuyts & Felis & Gänzle & Lebeer" authorityYear="2020" box="[1086,1299,550,574]" class="Bacilli" family="Lactobacillaceae" genus="Secundilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="52" pageNumber="2834" phylum="Firmicutes" rank="genus">
|
||
<emphasis id="B954EA8EFFB92145DD09FDB0FABC6059" box="[1086,1299,550,574]" italics="true" pageId="52" pageNumber="2834">Secundilactobacillus</emphasis>
|
||
</taxonomicName>
|
||
was previously referred to as the
|
||
<taxonomicName id="4C204D1FFFB92145DACFFDD3FB5D603A" ID-CoL="3RSQK" authorityName="Carr and Davies" authorityYear="1972" box="[1016,1266,581,605]" class="Bacilli" family="Lactobacillaceae" genus="Lactobacillus" kingdom="Bacteria" order="Lactobacillales" pageId="52" pageNumber="2834" phylum="Firmicutes" rank="species" species="collinoides">
|
||
<emphasis id="B954EA8EFFB92145DACFFDD3FB5D603A" box="[1016,1266,581,605]" italics="true" pageId="52" pageNumber="2834">Lactobacillus collinoides</emphasis>
|
||
</taxonomicName>
|
||
group.
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |