249 lines
24 KiB
XML
249 lines
24 KiB
XML
<document id="C659C48ABD1CD2B2CED1CEA471C3501E" ID-DOI="10.12651/JSR.2021.10.1.001" ID-ISSN="2713-8615" ID-Zenodo-Dep="8119987" IM.bibliography_approvedBy="felipe" IM.illustrations_approvedBy="diego" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="diego" IM.tables_approvedBy="diego" IM.taxonomicNames_approvedBy="felipe" IM.treatments_approvedBy="diego" checkinTime="1688643489330" checkinUser="felipe" docAuthor="Lee, Jae-Yun, Jeong, Yun-Seok, Kim, Pil Soo & Bae, Dong-Wook Hyun and Jin-Woo" docDate="2021" docId="3411CC53FFF8FFDAFCE816F3FDE15B08" docLanguage="en" docName="JSpeciesRes.10.1.1-11.pdf" docOrigin="Journal of Species Research 10 (1)" docStyle="DocumentStyle:4D398BFF45FF8CA9E08F546BB06AE372.1:JSpeciesRes.2012-.journal_article" docStyleId="4D398BFF45FF8CA9E08F546BB06AE372" docStyleName="JSpeciesRes.2012-.journal_article" docStyleVersion="1" docTitle="Gordonia didemni" docType="treatment" docVersion="3" lastPageNumber="8" masterDocId="C828B42BFFFDFFDDFFC11007FFF35C55" masterDocTitle="Isolation and identification of 18 unrecorded prokaryotic species from the intestinal tracts of aquatic animals in Korea" masterLastPageNumber="11" masterPageNumber="1" pageNumber="6" updateTime="1689191107744" updateUser="diego" zenodo-license-document="CC-BY-4.0">
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<mods:mods id="95252FDEE694ABD94D0A86B760F13B02" xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo id="526B8E3D105053C168681FF28D4CA631">
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<mods:title id="BB031416E3FBE25BA1F356B7D5873E1F">Isolation and identification of 18 unrecorded prokaryotic species from the intestinal tracts of aquatic animals in Korea</mods:title>
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</mods:titleInfo>
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<mods:name id="49758BB4D060E69BA2C032E8BB5AAF68" type="personal">
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<mods:roleTerm id="48D8A5F1E0175C1DCD0F95B0D8A7FB7A">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="FED26828FF81CC397DBFB59E783AB9C8">Lee, Jae-Yun</mods:namePart>
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</mods:name>
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<mods:name id="93DE79D9750056B1754B41DFA8681193" type="personal">
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<mods:roleTerm id="415C2D3BEA39083E4905F6C2638B8995">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="9AEC5F7D30A25CF8131B602387D42030">Jeong, Yun-Seok</mods:namePart>
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</mods:name>
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<mods:name id="498CD8CF3733903116BA03E4C60B32A5" type="personal">
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<mods:role id="7FD4EA0C158F5199A0C0C9A37E28421C">
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<mods:roleTerm id="0D36AC27CB51269318BAF8C16B78441B">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="EF49FE9835F0F5B89A4AF3A83CF238B7">Kim, Pil Soo</mods:namePart>
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</mods:name>
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<mods:name id="2F163093CF65813DF281EEB08B98D5B4" type="personal">
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<mods:role id="37541671CBC248BAE912D09DC5408CC2">
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<mods:roleTerm id="D88B4FFC0E1F201209A36207682C1C26">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="0083AF7957750666B59B903D3A41AA6C">Bae, Dong-Wook Hyun and Jin-Woo</mods:namePart>
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<mods:nameIdentifier id="C28704B004536D5B2332CF65FCE12700" type="email">baejw@khu.ac.kr</mods:nameIdentifier>
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<mods:typeOfResource id="AE530A47A8892E2A129F96DD7CA04ABF">text</mods:typeOfResource>
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<mods:titleInfo id="017000C9878F19F0C21B206B998651E2">
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<mods:title id="A52D8EAF463386EC677381949575330F">Journal of Species Research</mods:title>
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</mods:titleInfo>
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<mods:part id="F4A8FA4B229031829D65E4233E44FF2D">
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<mods:date id="9DC3BA229B5EBBD435B3E7E61382DD39">2021</mods:date>
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<mods:detail id="0DAE42039CD5878869434DFAA1998C0F" type="pubDate">
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<mods:number id="5670F57B82D3CDA777ECF34EFCE1F2C6">2021-02-28</mods:number>
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</mods:detail>
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<mods:detail id="9A9D45006311ED171F0822B593A296D1" type="volume">
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<mods:number id="8766116722B4EC649DE72ADF6E8FC651">10</mods:number>
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</mods:detail>
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<mods:detail id="953A7C9E24F748D6F3AFA3BEA56CF622" type="issue">
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<mods:number id="BF9F81D0B2BCB2133E3AF62703F26C83">1</mods:number>
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<mods:start id="87ACB84FBFCCFBAA0F4D63F431BDAF43">1</mods:start>
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<mods:classification id="10C54FA09F53FE006CE25D446AFB6A38">journal article</mods:classification>
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<mods:identifier id="F244E0708E5305589DE9282C8AC3E65B" type="DOI">10.12651/JSR.2021.10.1.001</mods:identifier>
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<mods:identifier id="091C2D01D399C3D99326B968E1454DA2" type="ISSN">2713-8615</mods:identifier>
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<mods:identifier id="D86307BF7862E1F7278F5E2F81A0C1F6" type="Zenodo-Dep">8119987</mods:identifier>
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</mods:mods>
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<treatment id="3411CC53FFF8FFDAFCE816F3FDE15B08" LSID="urn:lsid:plazi:treatment:3411CC53FFF8FFDAFCE816F3FDE15B08" httpUri="http://treatment.plazi.org/id/3411CC53FFF8FFDAFCE816F3FDE15B08" lastPageId="7" lastPageNumber="8" pageId="5" pageNumber="6">
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<subSubSection id="F4A22ECEFFF8FFDBFCE816F3FDFA5A6B" lastPageId="6" lastPageNumber="7" pageId="5" pageNumber="6" type="nomenclature">
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<paragraph id="BC077D45FFF8FFD8FCE816F3FAF95B59" blockId="5.[809,1290,1780,1804]" box="[809,1290,1780,1804]" pageId="5" pageNumber="6">
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<heading id="E74FCA29FFF8FFD8FCE816F3FAF95B59" box="[809,1290,1780,1804]" fontSize="10" level="2" pageId="5" pageNumber="6" reason="5">
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<emphasis id="8ECCA157FFF8FFD8FCE816F3FAF95B59" bold="true" box="[809,1290,1780,1804]" pageId="5" pageNumber="6">
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Description of
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<taxonomicName id="7BB806C6FFF8FFD8FC1116F3FB6A5B59" box="[976,1177,1780,1804]" class="Actinobacteridae" family="Nocardiaceae" genus="Gordonia" kingdom="Bacteria" order="Actinomycetales" pageId="5" pageNumber="6" phylum="Actinobacteria" rank="species" species="didemni">
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<emphasis id="8ECCA157FFF8FFD8FC1116F3FB6A5B59" bold="true" box="[976,1177,1780,1804]" italics="true" pageId="5" pageNumber="6">Gordonia didemni</emphasis>
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</taxonomicName>
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R33M6-1
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</emphasis>
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</heading>
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</paragraph>
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<paragraph id="BC077D45FFF8FFDBFC811722FDFA5A6B" blockId="5.[809,1414,1829,1982]" lastBlockId="6.[174,779,1154,1728]" lastPageId="6" lastPageNumber="7" pageId="5" pageNumber="6">
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Cells are Gramstainpositive, nonflagellated and rod shaped. Colonies are circular, flat, entire and apricot colored on MA medium after 48 h incubation at 30℃. Cells are positive for alkaline phosphatase, leucine arylamidase, valine arylamidase, cystine arylamidase, acid phosphatase, naphtholASBIphosphohydrolase,
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<emphasis id="8ECCA157FFFBFFDBFD911484FD9358CF" box="[592,608,1155,1178]" italics="true" pageId="6" pageNumber="7">α</emphasis>
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galactosidase,
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<emphasis id="8ECCA157FFFBFFDBFF6F14A4FF4D58EF" box="[174,190,1187,1210]" italics="true" pageId="6" pageNumber="7">α</emphasis>
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glucosidase,
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<emphasis id="8ECCA157FFFBFFDBFE8F14A4FEAE58EE" box="[334,349,1187,1211]" italics="true" pageId="6" pageNumber="7">β</emphasis>
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glucosidase (API ZYM) and Dglucose, Larabinose, Dmannose,
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<emphasis id="8ECCA157FFFBFFDBFE7914C3FE3A588E" box="[440,457,1220,1243]" italics="true" pageId="6" pageNumber="7">N</emphasis>
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acetylDglucosamine, Dmaltose, gluconate, adipate, citrate, salicin, Dmelibiose, propionate, valerate, 3hydroxybutyrate, 4hydroxybenzoate, inositol, Dsucrose, acetate (API 20NE/ID 32GN). Utilize Dtrehalose, Dcellobiose, gentiobiose, sucrose, Dturanose,
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<emphasis id="8ECCA157FFFBFFDBFF3C1562FEFC5929" box="[253,271,1381,1404]" italics="true" pageId="6" pageNumber="7">N</emphasis>
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glucosamine, neuraminic acid,
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<emphasis id="8ECCA157FFFBFFDBFDB81562FD7A5929" box="[633,649,1381,1404]" italics="true" pageId="6" pageNumber="7">α</emphasis>
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Dglucose, Dmannose, Dfructose, 6methylglucose, Dfucose, myoinositol, glycerol, Dglucose, gelatin, Lglutamic acid, pectin, Dglucuronic acid, citric acid,
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<emphasis id="8ECCA157FFFBFFDBFD9F15C1FD9D5988" box="[606,622,1478,1501]" italics="true" pageId="6" pageNumber="7">α</emphasis>
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glutaric acid, Lmalic acid, succinic acid,
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<emphasis id="8ECCA157FFFBFFDBFE1315E1FE1159A8" box="[466,482,1510,1533]" italics="true" pageId="6" pageNumber="7">α</emphasis>
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butyric acid,
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<emphasis id="8ECCA157FFFBFFDBFDB315E1FD7259AB" box="[626,641,1510,1534]" italics="true" pageId="6" pageNumber="7">β</emphasis>
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butyric acid, acetoacetic acid, propionic acid and acetic acid as sole carbon sources (Biolog GEN III).
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</paragraph>
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</subSubSection>
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<caption id="E8C72DCDFFFBFFDBFF6F13BBFCB15869" ID-DOI="http://doi.org/10.5281/zenodo.8119993" ID-Zenodo-Dep="8119993" httpUri="https://zenodo.org/record/8119993/files/figure.png" pageId="6" pageNumber="7" startId="6.[174,207,956,978]" targetBox="[267,1352,260,922]" targetPageId="6" targetType="figure">
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<paragraph id="BC077D45FFFBFFDBFF6F13BBFCB15869" blockId="6.[174,1444,956,1084]" pageId="6" pageNumber="7">
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<emphasis id="8ECCA157FFFBFFDBFF6F13BBFF1F5F84" bold="true" box="[174,236,956,978]" pageId="6" pageNumber="7">Fig. 4.</emphasis>
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The phylogenetic tree based on 16S rRNA gene sequence showing the phylogenetic relatedness between the two isolated strains belonging to the phylum
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<taxonomicName id="7BB806C6FFFBFFDBFE4313D1FE0F5FB9" box="[386,508,982,1004]" kingdom="Bacteria" pageId="6" pageNumber="7" phylum="Bacteroidetes" rank="phylum">Bacteroidetes</taxonomicName>
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and the type species from each genus. The tree was mainly reconstructed using the NJ, ML, and MP algorithms. The filled diamonds indicate the branches present in the phylogenetic trees reconstructed using three different tree reconstruction methods. Numbers on the nodes represent bootstrap values with 1000 replicates (NJ/ML/MP).
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<taxonomicName id="7BB806C6FFFBFFDBFBC0140CFB225874" authority="ATCC" authorityName="ATCC" box="[1025,1233,1035,1057]" class="Gammaproteobacteria" family="Enterobacteriaceae" genus="Escherichia" kingdom="Bacteria" order="Enterobacteriales" pageId="6" pageNumber="7" phylum="Proteobacteria" rank="species" species="coli">
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<emphasis id="8ECCA157FFFBFFDBFBC0140CFB615875" box="[1025,1170,1035,1056]" italics="true" pageId="6" pageNumber="7">Escherichia coli</emphasis>
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ATCC
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</taxonomicName>
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11775
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<superScript id="4BCDD00DFFFBFFDBFACF140FFAE45843" attach="left" box="[1294,1303,1032,1046]" fontSize="6" pageId="6" pageNumber="7">T</superScript>
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was used as an outgroup. The bar indicates 0.05 accumulated substitutions per nucleotide.
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</paragraph>
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</caption>
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<subSubSection id="F4A22ECEFFFBFFDAFF041641FDE15B08" lastPageId="7" lastPageNumber="8" pageId="6" pageNumber="7" type="description">
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<paragraph id="BC077D45FFFBFFDBFF041641FD405AEA" blockId="6.[174,779,1154,1728]" pageId="6" pageNumber="7">
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<materialsCitation id="0CD07718FFFBFFDBFF041641FD695AEA" collectionCode="R" country="South Korea" county="The" location="Korean" municipality="Yeongwol" pageId="6" pageNumber="7" specimenCode="R33" specimenCount="1" stateProvince="Gangwon">
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Strain
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<specimenCode id="EC1ED53EFFFBFFDBFEC91641FEC05A0B" box="[264,307,1606,1630]" collectionCode="R" country="Chile" name="Departamento de Geologia, Universidad de Chile" pageId="6" pageNumber="7">R33</specimenCode>
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M61 (= NIBRBAC000503080) was isolated from the gut of
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<location id="B9672B9EFFFBFFDBFE991660FE565A2B" LSID="urn:lsid:plazi:treatment:3411CC53FFF8FFDAFCE816F3FDE15B08:B9672B9EFFFBFFDBFE991660FE565A2B" box="[344,421,1639,1662]" country="South Korea" county="The" municipality="Yeongwol" name="Korean" pageId="6" pageNumber="7" stateProvince="Gangwon">Korean</location>
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striped bitterling (
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<taxonomicName id="7BB806C6FFFBFFDBFDA81661FED75ACB" authorityName="Mori" authorityYear="1928" class="Actinopterygii" family="Cyprinidae" genus="Acheilognathus" kingdom="Animalia" order="Cypriniformes" pageId="6" pageNumber="7" phylum="Chordata" rank="species" species="yamatsutae">
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<emphasis id="8ECCA157FFFBFFDBFDA81661FED75ACB" italics="true" pageId="6" pageNumber="7">Acheilognathus yamatsutae</emphasis>
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</taxonomicName>
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) at
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<collectingMunicipality id="5C63E73FFFFBFFDBFE8A1680FE4B5ACA" box="[331,440,1671,1695]" pageId="6" pageNumber="7">Yeongwol</collectingMunicipality>
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,
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<collectingRegion id="7E7CB3A7FFFBFFDBFE031680FD7F5ACA" box="[450,652,1671,1695]" country="South Korea" name="Gangwon" pageId="6" pageNumber="7">Gangwon Province</collectingRegion>
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,
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<collectingCountry id="C4AF3DD5FFFBFFDBFD571680FD2A5ACB" box="[662,729,1671,1694]" name="South Korea" pageId="6" pageNumber="7">Korea</collectingCountry>
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.
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<collectingCounty id="556605C9FFFBFFDBFD231680FCF85ACA" box="[738,779,1671,1695]" pageId="6" pageNumber="7">The</collectingCounty>
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DNA G + C content of the
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<typeStatus id="6303C3E7FFFBFFDBFE0416AFFE015A95" box="[453,498,1704,1728]" pageId="6" pageNumber="7">type</typeStatus>
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strain is 71 mol
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</materialsCitation>
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%.
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</paragraph>
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<paragraph id="BC077D45FFFBFFDBFF6F16E0FE385B75" blockId="6.[174,738,1767,1824]" pageId="6" pageNumber="7">
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<emphasis id="8ECCA157FFFBFFDBFF6F16E0FE385B75" bold="true" pageId="6" pageNumber="7">
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Description of
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<taxonomicName id="7BB806C6FFFBFFDBFE9416E0FE835B4A" class="Actinomycetia" family="Mycobacteriaceae" genus="Mycolicibacterium" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Mycobacteriales" pageId="6" pageNumber="7" phylum="Actinobacteriota" rank="subSpecies" species="fortuitum" subSpecies="acetamidolyticum">
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<emphasis id="8ECCA157FFFBFFDBFE9416E0FD605AAA" bold="true" box="[341,659,1767,1791]" italics="true" pageId="6" pageNumber="7">Mycolicibacterium fortuitum</emphasis>
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subsp.
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<emphasis id="8ECCA157FFFBFFDBFF6F1700FE835B4A" bold="true" box="[174,368,1799,1823]" italics="true" pageId="6" pageNumber="7">acetamidolyticum</emphasis>
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</taxonomicName>
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R33M4
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</emphasis>
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</paragraph>
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<paragraph id="BC077D45FFFBFFDBFF04173EFBF05988" blockId="6.[174,779,1849,1970]" lastBlockId="6.[839,1444,1154,1631]" pageId="6" pageNumber="7">
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Cells are Gramstainpositive, nonflagellated and rod shaped. Colonies are circular, flat and beige colored on MA medium after 48 h incubation at 30℃. Cells reduce nitrate to nitrite and are positive for
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<emphasis id="8ECCA157FFFBFFDBFDF9179DFDB45BE7" box="[568,583,1946,1970]" italics="true" pageId="6" pageNumber="7">β</emphasis>
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glucosidase, esterase (C4), esterase lipase (C8), leucine arylamidase, valine arylamidase, trypsin, acid phosphatase, naphtholASBIphosphohydrolase (API 20NE/ZYM). Assimilate Dglucose, Larabinose, Dmannose, Dmannitol, gluconate, adipate, malate, propionate, valerate, 3hydroxybutyrate, Lproline, acetate (API 20NE/ID 32GN) and utilize
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<emphasis id="8ECCA157FFFBFFDBFAAE1523FA8C596E" box="[1391,1407,1316,1339]" italics="true" pageId="6" pageNumber="7">α</emphasis>
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Dglucose, Dfructose, Dfructose, Laspartic acid, Lserine, Dgluconic acid, Dglucuronic acid, glucuronamide, citric acid, Lmalic acid, succinic acid, Tween40,
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<emphasis id="8ECCA157FFFBFFDBFAFC1582FABF59C8" box="[1341,1356,1413,1437]" italics="true" pageId="6" pageNumber="7">β</emphasis>
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butyric acid, propionic acid and acetic acid as sole carbon sources (Biolog GEN III).
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</paragraph>
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<paragraph id="BC077D45FFFBFFDBFC9F15E2FABF5A0B" blockId="6.[839,1444,1154,1631]" pageId="6" pageNumber="7">
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<materialsCitation id="0CD07718FFFBFFDBFC9F15E2FAC75A0B" collectionCode="R" country="South Korea" county="The" location="Korean" municipality="Yeongwol" pageId="6" pageNumber="7" specimenCode="R33" specimenCount="1" stateProvince="Gangwon">
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Strain
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<specimenCode id="EC1ED53EFFFBFFDBFC6715E1FC2259AB" box="[934,977,1510,1534]" collectionCode="R" country="Chile" name="Departamento de Geologia, Universidad de Chile" pageId="6" pageNumber="7">R33</specimenCode>
|
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M4 (= NIBRBAC000503081) was isolated from the gut of
|
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<location id="B9672B9EFFFBFFDBFC331601FBCC5A48" LSID="urn:lsid:plazi:treatment:3411CC53FFF8FFDAFCE816F3FDE15B08:B9672B9EFFFBFFDBFC331601FBCC5A48" box="[1010,1087,1542,1565]" country="South Korea" county="The" municipality="Yeongwol" name="Korean" pageId="6" pageNumber="7" stateProvince="Gangwon">Korean</location>
|
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striped bitterling (
|
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<taxonomicName id="7BB806C6FFFBFFDBFAC31601FC4E5A6B" authorityName="Mori" authorityYear="1928" class="Actinopterygii" family="Cyprinidae" genus="Acheilognathus" kingdom="Animalia" order="Cypriniformes" pageId="6" pageNumber="7" phylum="Chordata" rank="species" species="yamatsutae">
|
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<emphasis id="8ECCA157FFFBFFDBFAC31601FC4E5A6B" italics="true" pageId="6" pageNumber="7">Acheilognathus yamatsutae</emphasis>
|
||
</taxonomicName>
|
||
) at
|
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<collectingMunicipality id="5C63E73FFFFBFFDBFC251621FBA25A6B" box="[996,1105,1574,1598]" pageId="6" pageNumber="7">Yeongwol</collectingMunicipality>
|
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,
|
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<collectingRegion id="7E7CB3A7FFFBFFDBFB9A1621FAD55A6B" box="[1115,1318,1574,1598]" country="South Korea" name="Gangwon" pageId="6" pageNumber="7">Gangwon Province</collectingRegion>
|
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,
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<collectingCountry id="C4AF3DD5FFFBFFDBFAEE1621FA815A68" box="[1327,1394,1574,1597]" name="South Korea" pageId="6" pageNumber="7">Korea</collectingCountry>
|
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.
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<collectingCounty id="556605C9FFFBFFDBFABA1621FA575A6B" box="[1403,1444,1574,1598]" pageId="6" pageNumber="7">The</collectingCounty>
|
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DNA G + C content of the
|
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<typeStatus id="6303C3E7FFFBFFDBFB9F1640FB785A0A" box="[1118,1163,1607,1631]" pageId="6" pageNumber="7">type</typeStatus>
|
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strain is 66 mol
|
||
</materialsCitation>
|
||
%.
|
||
</paragraph>
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<paragraph id="BC077D45FFFBFFDBFC861680FBCC5AEA" blockId="6.[839,1308,1670,1727]" pageId="6" pageNumber="7">
|
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<emphasis id="8ECCA157FFFBFFDBFC861680FBCC5AEA" bold="true" pageId="6" pageNumber="7">
|
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Description of
|
||
<taxonomicName id="7BB806C6FFFBFFDBFC2F1680FC175AEA" class="Gammaproteobacteria" family="Enterobacteriaceae" genus="Yersinia" kingdom="Bacteria" order="Enterobacteriales" pageId="6" pageNumber="7" phylum="Proteobacteria" rank="subSpecies" species="kristensenii" subSpecies="rochesterensis">
|
||
<emphasis id="8ECCA157FFFBFFDBFC2F1680FB3E5ACB" bold="true" box="[1006,1229,1670,1695]" italics="true" pageId="6" pageNumber="7">Yersinia kristensenii</emphasis>
|
||
subsp.
|
||
<emphasis id="8ECCA157FFFBFFDBFC8616A0FC175AEA" bold="true" box="[839,996,1703,1727]" italics="true" pageId="6" pageNumber="7">rochesterensis</emphasis>
|
||
</taxonomicName>
|
||
K11M4
|
||
</emphasis>
|
||
</paragraph>
|
||
<paragraph id="BC077D45FFFBFFDAFC9F16DFFF055A89" blockId="6.[839,1444,1752,1970]" lastBlockId="7.[144,749,1119,1886]" lastPageId="7" lastPageNumber="8" pageId="6" pageNumber="7">
|
||
Cells are Gram-stain-negative, non-flagellated and rod shaped. Colonies are circular, convex, entire and beige colored on MA medium after 48 h incubation at 10℃. Cells reduce nitrate to nitrite and are positive for
|
||
<emphasis id="8ECCA157FFFBFFDBFAA3173EFA825B04" box="[1378,1393,1849,1873]" italics="true" pageId="6" pageNumber="7">β</emphasis>
|
||
glucosidase,
|
||
<emphasis id="8ECCA157FFFBFFDBFC70175EFC335B24" box="[945,960,1881,1905]" italics="true" pageId="6" pageNumber="7">β</emphasis>
|
||
galactosidase, alkaline phosphatase, leucine arylamidase, acid phosphatase, naphtholASBIphosphohydrolase,
|
||
<emphasis id="8ECCA157FFFBFFDBFC79179DFC355BE7" box="[952,966,1946,1970]" italics="true" pageId="6" pageNumber="7">β</emphasis>
|
||
galactosidase,
|
||
<emphasis id="8ECCA157FFFBFFDBFBA4179DFB865BE4" box="[1125,1141,1946,1969]" italics="true" pageId="6" pageNumber="7">α</emphasis>
|
||
glucosidase,
|
||
<emphasis id="8ECCA157FFFBFFDBFAC2179DFAE75BE4" box="[1283,1300,1946,1969]" italics="true" pageId="6" pageNumber="7">N</emphasis>
|
||
acetyl
|
||
<emphasis id="8ECCA157FFFBFFDBFAA2179DFA825BE7" box="[1379,1393,1946,1970]" italics="true" pageId="6" pageNumber="7">β</emphasis>
|
||
glucosaminidase (API 20NE/ZYM). Assimilate Dglucose, Larabinose, Dmannose, Dmannitol,
|
||
<emphasis id="8ECCA157FFFAFFDAFDE51487FDC658C2" box="[548,565,1152,1175]" italics="true" pageId="7" pageNumber="8">N</emphasis>
|
||
acetylDglucosamine, Dmaltose, gluconate, salicin, Lfucose, Dsorbitol, Lhistidine, 2ketogluconate, 3hydroxybutyrate, Lproline, Lrhamnose, Dribose, inositol, Dsucrose, acetate, lactate, Lalanine, 5ketogluconate, glycogen (API 20NE/ ID 32GN) and utilize dextrin, Dmaltose, Dtrehalose, D-cellobiose, gentiobiose, sucrose, D-raffinose, D-melibiose,
|
||
<emphasis id="8ECCA157FFFAFFDAFF031566FF22592C" box="[194,209,1377,1401]" italics="true" pageId="7" pageNumber="8">β</emphasis>
|
||
Dglucoside, Dsalicin,
|
||
<emphasis id="8ECCA157FFFAFFDAFE161565FE1A592C" box="[471,489,1378,1401]" italics="true" pageId="7" pageNumber="8">N</emphasis>
|
||
glucosamine,
|
||
<emphasis id="8ECCA157FFFAFFDAFD441566FD67592C" box="[645,660,1377,1401]" italics="true" pageId="7" pageNumber="8">β</emphasis>
|
||
mannosamine,
|
||
<emphasis id="8ECCA157FFFAFFDAFF301585FEF059CC" box="[241,259,1410,1433]" italics="true" pageId="7" pageNumber="8">N</emphasis>
|
||
galactosamine,
|
||
<emphasis id="8ECCA157FFFAFFDAFE031585FE2159CC" box="[450,466,1410,1433]" italics="true" pageId="7" pageNumber="8">α</emphasis>
|
||
Dglucose, Dmannose, Dfructose, Dgalactose, Lfucose, Lrhamnose, inosine, Dsorbitol, Dmannitol, myoinositol, glycerol, Dglucose, Dfructose, Dserine, glycylLproline, Lalanine, Larginine, Laspartic acid, Lglutamic acid, Lhistidine, Lserine, pectin, galacturonic acid, galactonic lactone, Dgluconic acid, Dglucuronic acid, glucuronamide, mucic acid, methyl pyruvate, Dlactic acid, citric acid, Dmalic acid, Lmalic acid, succinic acid, Tween40, acetoacetic acid, acetic acid and formic acid as sole carbon sources (Biolog GEN III).
|
||
</paragraph>
|
||
<caption id="E8C72DCDFFFAFFDAFF4E139FFD9D584C" ID-DOI="http://doi.org/10.5281/zenodo.8119995" ID-Zenodo-Dep="8119995" httpUri="https://zenodo.org/record/8119995/files/figure.png" pageId="7" pageNumber="8" startId="7.[143,176,920,942]" targetBox="[229,1331,257,887]" targetPageId="7" targetType="figure">
|
||
<paragraph id="BC077D45FFFAFFDAFF4E139FFD9D584C" blockId="7.[143,1415,920,1049]" pageId="7" pageNumber="8">
|
||
<emphasis id="8ECCA157FFFAFFDAFF4E139FFF385FF8" bold="true" box="[143,203,920,942]" pageId="7" pageNumber="8">Fig. 5.</emphasis>
|
||
The phylogenetic tree based on 16S rRNA gene sequence showing the phylogenetic relatedness between the three isolated strains belonging to the phylum
|
||
<taxonomicName id="7BB806C6FFFAFFDAFEF513B4FE605F9C" authorityName="corrig. Gibbons & Murray" authorityYear="1978" box="[308,403,947,969]" kingdom="Bacteria" pageId="7" pageNumber="8" phylum="Firmicutes" rank="phylum">Firmicutes</taxonomicName>
|
||
and the type species from each genus. The tree was mainly reconstructed using the NJ, ML, and MP algorithms. The filled diamonds indicate the branches present in the phylogenetic trees reconstructed using three different tree reconstruction methods. Numbers on the nodes represent bootstrap values with 1000 replicates(NJ/ML/MP).
|
||
<taxonomicName id="7BB806C6FFFAFFDAFCBC13EEFC075FA8" authority="ATCC" authorityName="ATCC" box="[893,1012,1000,1022]" class="Gammaproteobacteria" family="Enterobacteriaceae" genus="Escherichia" kingdom="Bacteria" order="Enterobacteriales" pageId="7" pageNumber="8" phylum="Proteobacteria" rank="species" species="coli">
|
||
<emphasis id="8ECCA157FFFAFFDAFCBC13EEFC445FA8" box="[893,951,1000,1022]" italics="true" pageId="7" pageNumber="8">E. coli</emphasis>
|
||
ATCC
|
||
</taxonomicName>
|
||
11775
|
||
<superScript id="4BCDD00DFFFAFFDAFBF113E3FBCA5FA7" attach="left" box="[1072,1081,996,1010]" fontSize="6" pageId="7" pageNumber="8">T</superScript>
|
||
was used as an outgroup. The bar indicates 0.05 accumulated substitutions per nucleotide.
|
||
</paragraph>
|
||
</caption>
|
||
<paragraph id="BC077D45FFFAFFDAFF6716E3FDE15B08" blockId="7.[144,749,1119,1886]" pageId="7" pageNumber="8">
|
||
<materialsCitation id="0CD07718FFFAFFDAFF6716E3FE0A5B08" collectorName="Strain K" country="South Korea" location="Chungcheongbuk Province" pageId="7" pageNumber="8" specimenCount="1" stateProvince="Chungbuk">
|
||
<collectorName id="114D1893FFFAFFDAFF6716E3FEF15AA9" box="[166,258,1764,1788]" pageId="7" pageNumber="8">Strain K</collectorName>
|
||
11M4 (= NIBRBAC000503083) was isolated from the gut of oily bitterling (
|
||
<taxonomicName id="7BB806C6FFFAFFDAFE7F1703FD835B49" baseAuthorityName="Kim & Kim" baseAuthorityYear="1990" box="[446,624,1796,1820]" class="Actinopterygii" family="Cyprinidae" genus="Tanakia" kingdom="Animalia" order="Cypriniformes" pageId="7" pageNumber="8" phylum="Chordata" rank="species" species="koreensis">
|
||
<emphasis id="8ECCA157FFFAFFDAFE7F1703FD835B49" box="[446,624,1796,1820]" italics="true" pageId="7" pageNumber="8">Tanakia koreensis</emphasis>
|
||
</taxonomicName>
|
||
) at Cheongju,
|
||
<collectingRegion id="7E7CB3A7FFFAFFDAFF751722FE2F5B68" box="[180,476,1829,1853]" country="South Korea" name="Chungbuk" pageId="7" pageNumber="8">Chungcheongbuk Province</collectingRegion>
|
||
,
|
||
<collectingCountry id="C4AF3DD5FFFAFFDAFE281722FDDD5B69" box="[489,558,1829,1852]" name="South Korea" pageId="7" pageNumber="8">Korea</collectingCountry>
|
||
. The DNA G + C content of the
|
||
<typeStatus id="6303C3E7FFFAFFDAFEE51741FEA25B0B" box="[292,337,1862,1886]" pageId="7" pageNumber="8">type</typeStatus>
|
||
strain is 48 mol
|
||
</materialsCitation>
|
||
%.
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |