199 lines
19 KiB
XML
199 lines
19 KiB
XML
<document id="950718441616A2DE7D5E5EA0842827B8" ID-CLB-Dataset="20655" ID-DOI="10.1099/ijsem.0.004644" ID-GBIF-Dataset="6b321035-fd9c-4b25-a3b6-79a05a309793" ID-ISSN="1466-5034" ID-PMC="PMC8346765" ID-PubMed="33533708" ID-Zenodo-Dep="6048739" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="existingObjects,plazi" IM.taxonomicNames_approvedBy="felipe" checkinTime="1644597549702" checkinUser="felipe" docAuthor="Li, Fuyong, Cheng, Christopher C., Zheng, Jinshui, Liu, Junhong, Quevedo, Rodrigo Margain, Li, Junjie, Roos, Stefan, Gänzle, Michael G. & Walter, Jens" docDate="2021" docId="CD6F3526FFD42537477EFB79FAB8248C" docLanguage="en" docName="IntJSystEvolMicrobiol.71.2.004644.pdf" docOrigin="International Journal of Systematic and Evolutionary Microbiology (004644) 71 (2)" docSource="http://dx.doi.org/10.1099/ijsem.0.004644" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.3:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="3" docTitle="Limosilactobacillus agrestis Li & Cheng & Zheng & Liu & Quevedo & Li & Roos & Gänzle & Walter 2021, SP. NOV." docType="treatment" docVersion="9" lastPageNumber="16" masterDocId="31564D5EFFDB25384707FFD3FFC62635" masterDocTitle="Limosilactobacillus balticus sp. nov., Limosilactobacillus agrestis sp. nov., Limosilactobacillus albertensis sp. nov., Limosilactobacillus rudii sp. nov. and Limosilactobacillus fastidiosus sp. nov., five novel Limosilactobacillus species isolated from the vertebrate gastrointestinal tract, and proposal of six subspecies of Limosilactobacillus reuteri adapted to the gastrointestinal tract of specific vertebrate hosts" masterLastPageNumber="21" masterPageNumber="1" pageNumber="16" updateTime="1699310790206" updateUser="ExternalLinkService">
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<mods:title id="4EB57ABBA316BB22968C3D8578BB8CBF">Limosilactobacillus balticus sp. nov., Limosilactobacillus agrestis sp. nov., Limosilactobacillus albertensis sp. nov., Limosilactobacillus rudii sp. nov. and Limosilactobacillus fastidiosus sp. nov., five novel Limosilactobacillus species isolated from the vertebrate gastrointestinal tract, and proposal of six subspecies of Limosilactobacillus reuteri adapted to the gastrointestinal tract of specific vertebrate hosts</mods:title>
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<mods:namePart id="C4CB7F3CF99F7111B5B5E196343E7F03">Li, Fuyong</mods:namePart>
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<mods:namePart id="3FFC8AA5B9B345A17B9834A80192C411">Cheng, Christopher C.</mods:namePart>
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<mods:namePart id="E084F69ED3B77B83A41ED586A6DAC1B9">Zheng, Jinshui</mods:namePart>
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<mods:namePart id="57B09779F084E3FA9083035A8857F831">Liu, Junhong</mods:namePart>
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<mods:namePart id="74DE92125B361945627AB72B1D5B3923">Quevedo, Rodrigo Margain</mods:namePart>
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<mods:namePart id="5B8926A33C04360550500257C63D2BB3">Li, Junjie</mods:namePart>
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<mods:namePart id="E23EF0A2A40B89AAB20B320983499D8D">Roos, Stefan</mods:namePart>
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<mods:namePart id="9AA81B98EA22C9E0478F37BA0CAF20EB">Gänzle, Michael G.</mods:namePart>
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<mods:namePart id="028E0CFDD8B040F137BED6A2CB7D77A2">Walter, Jens</mods:namePart>
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<mods:title id="5DD403132C7979374899163B33894B2A">International Journal of Systematic and Evolutionary Microbiology</mods:title>
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<mods:part id="FB5C73DC8FB71D9D82CCF92678F007FE">
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<mods:date id="FFB575488CA3333FB0A72E9463C2E443">2021</mods:date>
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<mods:title id="B97F28BEE473E581D06779B4FE68B1AC">004644</mods:title>
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<mods:number id="2E197C5EAB2368EE67B346DF43CA93BA">2021-02-01</mods:number>
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<mods:number id="97B99E5EE2970681DFD07C6FC75D0005">71</mods:number>
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<treatment id="CD6F3526FFD42537477EFB79FAB8248C" ID-DOI="http://doi.org/10.5281/zenodo.6310174" ID-GBIF-Taxon="193366142" ID-Zenodo-Dep="6310174" LSID="urn:lsid:plazi:treatment:CD6F3526FFD42537477EFB79FAB8248C" httpUri="http://treatment.plazi.org/id/CD6F3526FFD42537477EFB79FAB8248C" lastPageNumber="16" pageId="15" pageNumber="16">
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<subSubSection id="0DDCD7BBFFD42537477EFB79FE4622D9" pageId="15" pageNumber="16" type="nomenclature">
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<paragraph id="45798430FFD42537477EFB79FE4622D9" blockId="15.[120,766,1194,1956]" pageId="15" pageNumber="16">
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<heading id="1E31335CFFD42537477EFB79FE4622D9" allCaps="true" bold="true" fontSize="12" level="2" pageId="15" pageNumber="16" reason="3">
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<emphasis id="77B25822FFD42537477EFB79FE4622D9" bold="true" pageId="15" pageNumber="16">
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DESCRIPTION OF
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<taxonomicName id="82C6FFB3FFD425374675FB79FEC222D9" authority="Li & Cheng & Zheng & Liu & Quevedo & Li & Roos & Gänzle & Walter, 2021" authorityName="Li & Cheng & Zheng & Liu & Quevedo & Li & Roos & Gänzle & Walter" authorityYear="2021" class="Bacilli" family="Lactobacillaceae" genus="Limosilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="15" pageNumber="16" phylum="Firmicutes" rank="species" species="agrestis" status="sp. nov.">
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<emphasis id="77B25822FFD425374675FB79FEC222D9" bold="true" italics="true" pageId="15" pageNumber="16">LIMOSILACTOBACILLUS AGRESTIS</emphasis>
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</taxonomicName>
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<taxonomicNameLabel id="6C81E559FFD42537460BFB1CFE4622D9" box="[268,384,1231,1260]" pageId="15" pageNumber="16" rank="species">SP. NOV.</taxonomicNameLabel>
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</emphasis>
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection id="0DDCD7BBFFD42537477EFB2AFF1A237B" pageId="15" pageNumber="16" type="etymology">
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<paragraph id="45798430FFD42537477EFB2AFF1A237B" blockId="15.[120,766,1194,1956]" pageId="15" pageNumber="16">
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<taxonomicName id="82C6FFB3FFD42537477EFB2AFE502324" authorityName="Li & Cheng & Zheng & Liu & Quevedo & Li & Roos & Gänzle & Walter" authorityYear="2021" box="[121,406,1273,1297]" class="Bacilli" family="Lactobacillaceae" genus="Limosilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="15" pageNumber="16" phylum="Firmicutes" rank="species" species="agrestis">
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<emphasis id="77B25822FFD42537477EFB2AFE502324" box="[121,406,1273,1297]" italics="true" pageId="15" pageNumber="16">Limosilactobacillus agrestis</emphasis>
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</taxonomicName>
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(a.gres′ tis. L. masc. adj.
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<taxonomicName id="82C6FFB3FFD4253745A3FB29FD372324" authorityName="Li & Cheng & Zheng & Liu & Quevedo & Li & Roos & Gänzle & Walter" authorityYear="2021" box="[676,753,1274,1297]" class="Bacilli" family="Lactobacillaceae" genus="Limosilactobacillus" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Lactobacillales" pageId="15" pageNumber="16" phylum="Firmicutes" rank="species" species="agrestis">
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<emphasis id="77B25822FFD4253745A3FB29FD372324" box="[676,753,1274,1297]" italics="true" pageId="15" pageNumber="16">agrestis</emphasis>
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</taxonomicName>
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, wild, referring to the isolation of the
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<typeStatus id="9A7D3A92FFD425374517FACBFDF82305" box="[528,574,1304,1328]" pageId="15" pageNumber="16">type</typeStatus>
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strain from wild rodents).
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</paragraph>
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</subSubSection>
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<subSubSection id="0DDCD7BBFFD42537477EFAB7FA4C2468" pageId="15" pageNumber="16" type="reference_group">
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<paragraph id="45798430FFD42537477EFAB7FA4C2468" blockId="15.[120,766,1194,1956]" lastBlockId="15.[827,1473,183,697]" pageId="15" pageNumber="16">
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<collectorName id="E833E1E6FFD42537477EFAB7FF692349" box="[121,175,1380,1404]" pageId="15" pageNumber="16">Cells</collectorName>
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are
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<collectorName id="E833E1E6FFD4253747E5FAB7FE422349" box="[226,388,1380,1404]" pageId="15" pageNumber="16">Gram-positive</collectorName>
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, non-motile, non-spore-forming, catalase-negative and heterofermentative.
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<collectorName id="E833E1E6FFD42537455DFA50FD5723AE" box="[602,657,1411,1435]" pageId="15" pageNumber="16">Cells</collectorName>
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are rodshaped, measuring 0.9–2.7×0.6–0.8 µm.
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<collectorName id="E833E1E6FFD425374541FA72FD6F238C" box="[582,681,1441,1465]" pageId="15" pageNumber="16">Colonies</collectorName>
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of the
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<typeStatus id="9A7D3A92FFD42537477EFA12FF6F23EC" box="[121,169,1473,1497]" pageId="15" pageNumber="16">type</typeStatus>
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strain WF-MT5-AT on MRS agar plate incubated at the anaerobic condition at 37 °C for 2 days are yellowish, translucent, flat, circular shape but irregular edge, with a diameter of
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<quantity id="823E29D5FFD425374625F9CFFE612001" box="[290,423,1564,1588]" metricMagnitude="-3" metricUnit="m" metricValue="3.7" metricValueMax="5.2" metricValueMin="2.2" pageId="15" pageNumber="16" unit="mm" value="3.7" valueMax="5.2" valueMin="2.2">2.2–5.2 mm</quantity>
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; no colony appears on MRS agar plate incubated at the aerobic condition at 37 °C for 2 days. D-Lactate, L-lactate and gas are produced from glucose fermentation by the
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<typeStatus id="9A7D3A92FFD4253746B2F9AAFE2220A4" box="[437,484,1657,1681]" pageId="15" pageNumber="16">type</typeStatus>
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strain WF-MT5-AT.
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<collectorName id="E833E1E6FFD4253745CCF9ABFD3120A5" box="[715,759,1656,1680]" pageId="15" pageNumber="16">Cell</collectorName>
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growth occurs at 37 °C, slow growth is observed at 30 and 45 °C and no growth occurs at 15 °
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<collectorName id="E833E1E6FFD425374528F966FD6020F8" box="[559,678,1717,1741]" pageId="15" pageNumber="16">C. Growth</collectorName>
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occurs at pH 4.0–8.0 in MRS broth.
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<collectorName id="E833E1E6FFD4253746C4F906FE2F20D9" box="[451,489,1749,1772]" pageId="15" pageNumber="16">For</collectorName>
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WF-MT5-AT, the major fatty acids are C
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<subScript id="D9428675FFD425374632F8D0FE942124" attach="right" box="[309,338,1795,1809]" fontSize="6" pageId="15" pageNumber="16">16:0</subScript>
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, followed by C
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<subScript id="D9428675FFD425374505F8D0FDE62124" attach="left" box="[514,544,1795,1809]" fontSize="6" pageId="15" pageNumber="16">19:0</subScript>
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cyclo
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<emphasis id="77B25822FFD42537456BF920FDB9213F" box="[620,639,1779,1802]" italics="true" pageId="15" pageNumber="16">ω</emphasis>
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8
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<emphasis id="77B25822FFD42537458AF920FD51213F" box="[653,663,1779,1802]" italics="true" pageId="15" pageNumber="16">c</emphasis>
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.
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<collectorName id="E833E1E6FFD4253745AFF920FD1A213E" box="[680,732,1779,1803]" pageId="15" pageNumber="16">Acid</collectorName>
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is produced from L-arabinose and aesculin; the fermentation of D-ribose, D-galactose, D-glucose, maltose, melibiose, sucrose and raffinose is strain-specific; acid is not produced from D-xylose, D-fructose, D-mannose, methyl α-
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<collectorName id="E833E1E6FFD4253745D9F8BDFEF22191" pageId="15" pageNumber="16">Dglucopyranoside</collectorName>
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||
, lactose, potassium gluconate, glycerol, erythritol, D-arabinose, L-xylose, D-adonitol, methyl
|
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<emphasis id="77B25822FFD42537428EFF64FA5026FA" box="[1417,1430,183,207]" italics="true" pageId="15" pageNumber="16">β</emphasis>
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||
-
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<collectorName id="E833E1E6FFD4253742A6FF64FC2026D8" pageId="15" pageNumber="16">Dxylopyranoside</collectorName>
|
||
, L-sorbose,L-rhamnose, dulcitol, inositol, D-mannitol, D-sorbitol, methyl α- D-mannopyranoside,
|
||
<emphasis id="77B25822FFD42537443BFEC0FC89271F" box="[828,847,275,298]" italics="true" pageId="15" pageNumber="16">N</emphasis>
|
||
-acetylglucosamine, amygdalin, arbutin, salicin, cellobiose, trehalose, inulin, melezitose, starch, glycogen, xylitol, gentiobiose, turanose, D-lyxose, D-tagatose, D-fucose, L-fucose,D-arabitol,L-arabitol, potassium 2-ketogluconate or potassium 5-ketogluconate.
|
||
<collectorName id="E833E1E6FFD425374389FE5EFB702790" box="[1166,1206,397,421]" pageId="15" pageNumber="16">The</collectorName>
|
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cell-wall peptidoglycan of WF-MT5-AT contains the amino acids alanine (Ala), glutamic acid (Glu), lysine (Lys), aspartic acid (Asp), serine (Ser) and threonine (Thr), with the molar ratio 1.1 (Ala):0.8 (Asp):1.0 (Glu):0.7 (Lys):0.1 (Thr):0.1 (Ser), suggesting the cell-wall peptidoglycan
|
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<typeStatus id="9A7D3A92FFD425374349FDF4FBB8240A" box="[1102,1150,551,575]" pageId="15" pageNumber="16">type</typeStatus>
|
||
A4α L-Lys–D-Asp by [
|
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<bibRefCitation id="2157F9C1FFD42537428AFDF4FA68240A" author="Schumann P." box="[1421,1454,551,575]" pageId="15" pageNumber="16" pagination="101 - 129" refId="ref16862" refString="38. Schumann P. Peptidoglycan structure. In: Rainey F, Oren A (editors). Methods in Microbiology. Academic Press; 2011. pp. 101 - 129." type="book chapter" year="2011">38</bibRefCitation>
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].
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<collectorName id="E833E1E6FFD42537443BFD96FCA22468" box="[828,868,581,605]" pageId="15" pageNumber="16">The</collectorName>
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DNA G+C content of WF-MT5-AT is 38.0mol%.
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</paragraph>
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</subSubSection>
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<subSubSection id="0DDCD7BBFFD425374295FD96FAB8248C" pageId="15" pageNumber="16" type="reference_group">
|
||
<paragraph id="45798430FFD425374295FD96FAB8248C" blockId="15.[827,1473,183,697]" pageId="15" pageNumber="16">
|
||
<materialsCitation id="F5AE8E6DFFD425374295FD96FAB8248C" ID-GBIF-Occurrence="3465844309" pageId="15" pageNumber="16" typeStatus="holotype">
|
||
<collectorName id="E833E1E6FFD425374295FD96FA7C2468" box="[1426,1466,581,605]" pageId="15" pageNumber="16">The</collectorName>
|
||
<typeStatus id="9A7D3A92FFD42537443BFDB7FCAD2449" box="[828,875,612,636]" pageId="15" pageNumber="16">type</typeStatus>
|
||
strain is WF-MT5-AT (=DSM 110569
|
||
<superScript id="B2B32978FFD425374201FDB0FAD62444" attach="none" box="[1286,1296,611,625]" fontSize="6" pageId="15" pageNumber="16">T</superScript>
|
||
=LMG 31629
|
||
<superScript id="B2B32978FFD4253742A6FDB0FA6D2444" attach="none" box="[1441,1451,611,625]" fontSize="6" pageId="15" pageNumber="16">T</superScript>
|
||
), which was isolated from the jejunum of field vole (
|
||
<taxonomicName id="82C6FFB3FFD42537425CFD50FC4A248C" ID-CoL="7VV7M" authorityName="Li & Cheng & Zheng & Liu & Quevedo & Li & Roos & Gänzle & Walter" authorityYear="2021" class="Mammalia" family="Cricetidae" genus="Microtus" kingdom="Animalia" order="Rodentia" pageId="15" pageNumber="16" phylum="Chordata" rank="species" species="agrestis">
|
||
<emphasis id="77B25822FFD42537425CFD50FC4A248C" italics="true" pageId="15" pageNumber="16">Microtus agrestis</emphasis>
|
||
</taxonomicName>
|
||
) caught in the
|
||
<collectingRegion id="87024AD2FFD425374335FD72FB47248C" box="[1074,1153,673,697]" country="Lithuania" name="Vilniaus" pageId="15" pageNumber="16">Vilnius</collectingRegion>
|
||
area in
|
||
<collectingCountry id="3DD1C4A0FFD4253743DDFD72FA82248C" box="[1242,1348,673,697]" name="Lithuania" pageId="15" pageNumber="16">Lithuania</collectingCountry>
|
||
[
|
||
<bibRefCitation id="2157F9C1FFD425374255FD72FAB7248C" author="Lin XB & Wang T & Stothard P & Corander J & Wang J" box="[1362,1393,673,697]" pageId="15" pageNumber="16" pagination="2770 - 2784" refId="ref15858" refString="13. Lin XB, Wang T, Stothard P, Corander J, Wang J et al. The evolution of ecological facilitation within mixed-species biofilms in the mouse gastrointestinal tract. Isme J 2018; 12: 2770 - 2784." type="journal article" year="2018">13</bibRefCitation>
|
||
].
|
||
</materialsCitation>
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |