137 lines
15 KiB
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137 lines
15 KiB
XML
<document id="619C7997C1A9BA638FBE07A373F49083" ID-DOI="10.11646/phytotaxa.388.1.2" ID-ISSN="1179-3163" ID-Zenodo-Dep="13725500" IM.bibliography_approvedBy="felipe" IM.illustrations_approvedBy="felipe" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.taxonomicNames_approvedBy="felipe" IM.treatments_approvedBy="felipe" checkinTime="1725673815287" checkinUser="felipe" docAuthor="Darienko, Tatyana & Pröschold, Thomas" docDate="2019" docId="03BBD82074369832FF2DFC4FFEB6F9A8" docLanguage="en" docName="phytotaxa.388.1.2.pdf" docOrigin="Phytotaxa 388 (1)" docSource="http://dx.doi.org/10.11646/phytotaxa.388.1.2" docStyle="DocumentStyle:96748F8F1B6C902996E134952A3A36B9.13:Phytotaxa.2014-.journal_article" docStyleId="96748F8F1B6C902996E134952A3A36B9" docStyleName="Phytotaxa.2014-.journal_article" docStyleVersion="13" docTitle="Jaagichlorella roystonensis var. epilithica Darienko & Proschold 2019, var. nov." docType="treatment" docVersion="2" lastPageNumber="64" masterDocId="FF82A05874279823FFA5FFF9FFB7FFD5" masterDocTitle="The genus Jaagichlorella Reisigl (Trebouxiophyceae, Chlorophyta) and its close relatives: an evolutionary puzzle" masterLastPageNumber="68" masterPageNumber="47" pageNumber="64" updateTime="1725685413678" updateUser="ExternalLinkService" zenodo-license-figures="UNSPECIFIED" zenodo-license-treatments="UNSPECIFIED">
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<mods:title id="D4BE727D8A457D59FA9A49DDB10ABB64">The genus Jaagichlorella Reisigl (Trebouxiophyceae, Chlorophyta) and its close relatives: an evolutionary puzzle</mods:title>
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<mods:name id="F8216D273281B3638BAAA155FE0B000B" type="personal">
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<mods:roleTerm id="C9DF69B0A9E7E6A25EF91A3E73D46841">Author</mods:roleTerm>
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<mods:namePart id="1F28A759D5A18FC167F5F602490A7C67">Darienko, Tatyana</mods:namePart>
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<mods:affiliation id="D9D2690685754080AEE4B67E6CF68798">University of Göttingen, Albrecht-von-Haller-Institute of Plant Sciences, Experimental Phycology and Sammlung für Algenkulturen, D- 37073 Göttingen, Germany & M. G. Kholodny Institute of Botany, National Academy Science of Ukraine, Kyiv 01601, Ukraine</mods:affiliation>
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<mods:roleTerm id="6820A985DDFC3C66EB40AD8A5E4BD7E6">Author</mods:roleTerm>
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<mods:namePart id="7C8B8C72A5081DFAEFFCCCA8AF043CF1">Pröschold, Thomas</mods:namePart>
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<mods:affiliation id="650FF95D41064CEF36E1DAEF64D9C21F">University of Innsbruck, Research Department for Limnology, A- 5310 Mondsee, Austria</mods:affiliation>
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<mods:typeOfResource id="32BE9AF507DC11EF2164691AF5F8631B">text</mods:typeOfResource>
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<mods:title id="60F09A78164A608D7EC9A2A9856ADBAD">Phytotaxa</mods:title>
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<mods:part id="B06A1874D24F3FBCAFE62DCBB2E51E77">
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<mods:date id="1C8E73863627DB2C8F27CB5CE29C8AD7">2019</mods:date>
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<mods:number id="4E9C085B5274C9ADE32A0D7D16C543AD">2019-01-14</mods:number>
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<mods:number id="BE5C701DE093BC75003D3FDA324A4A04">388</mods:number>
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<mods:url id="BA9D85C444A224B3461DE978A53F1DA4">http://dx.doi.org/10.11646/phytotaxa.388.1.2</mods:url>
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<mods:classification id="A4BBAE69F430DF4C0F67039AC0503163">journal article</mods:classification>
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<mods:identifier id="339BB4A8BDAF391031FB81086DA53631" type="DOI">10.11646/phytotaxa.388.1.2</mods:identifier>
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<mods:identifier id="0EC0B3331A60EC491046FC55667774F8" type="ISSN">1179-3163</mods:identifier>
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<treatment id="03BBD82074369832FF2DFC4FFEB6F9A8" ID-DOI="http://doi.org/10.5281/zenodo.13725520" ID-Zenodo-Dep="13725520" LSID="urn:lsid:plazi:treatment:03BBD82074369832FF2DFC4FFEB6F9A8" httpUri="http://treatment.plazi.org/id/03BBD82074369832FF2DFC4FFEB6F9A8" lastPageNumber="64" pageId="17" pageNumber="64">
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<subSubSection id="C3083ABD74369832FF2DFC4FFBD3FC04" box="[136,1124,950,977]" pageId="17" pageNumber="64" type="nomenclature">
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<paragraph id="8BAD693674369832FF2DFC4FFBD3FC04" blockId="17.[136,1124,950,977]" box="[136,1124,950,977]" pageId="17" pageNumber="64">
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<heading id="D0E5DE5A74369832FF2DFC4FFBD3FC04" box="[136,1124,950,977]" fontSize="11" level="2" pageId="17" pageNumber="64" reason="3">
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<taxonomicName id="4C1212B574369832FF2DFC4FFCD9FC04" authority="Darienko & Proschold" authorityName="Darienko & Proschold" authorityYear="2019" box="[136,878,950,977]" class="Trebouxiophyceae" family="Oocystaceae" genus="Jaagichlorella" kingdom="Plantae" order="Oocystales" pageId="17" pageNumber="64" phylum="Chlorophyta" rank="variety" species="roystonensis" status="var. nov." variety="epilithica">
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<emphasis id="B966B52474369832FF2DFC4FFDDCFC04" bold="true" box="[136,619,950,977]" pageId="17" pageNumber="64">
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<emphasis id="B966B52474369832FF2DFC4FFE72FC05" bold="true" box="[136,453,950,977]" italics="true" pageId="17" pageNumber="64">Jaagichlorella roystonensis</emphasis>
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var.
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<emphasis id="B966B52474369832FDA5FC4FFDDCFC04" bold="true" box="[512,619,950,977]" italics="true" pageId="17" pageNumber="64">epilithica</emphasis>
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</emphasis>
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Darienko & Pröschold
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</taxonomicName>
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<taxonomicNameLabel id="A255085F74369832FCD0FC41FC64FC04" box="[885,979,952,977]" pageId="17" pageNumber="64" rank="variety">
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var.
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<emphasis id="B966B52474369832FC00FC41FC64FC04" box="[933,979,952,977]" italics="true" pageId="17" pageNumber="64">nov.</emphasis>
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</taxonomicNameLabel>
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(
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<figureCitation id="132975B374369832FC47FC41FBEBFC04" box="[994,1116,952,977]" captionStart="FIGURE 5" captionStartId="11.[136,229,1427,1448]" captionTargetBox="[189,1398,190,1402]" captionTargetId="figure-14@11.[189,1398,190,1402]" captionTargetPageId="11" captionText="FIGURE 5. Morphology and phenotypic plasticity of Jaagichlorella roystonensis var. epilithica (SAG 2133; A.–H.) and J. roystonensis var. handai (SAG 2198; I.–G‘.); scale bar = 10 μm." figureDoi="http://doi.org/10.5281/zenodo.13725512" httpUri="https://zenodo.org/record/13725512/files/figure.png" pageId="17" pageNumber="64">Fig. 5A–H</figureCitation>
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)
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection id="C3083ABD74369832FF2DFBF9FAB8FA54" pageId="17" pageNumber="64" type="description">
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<paragraph id="8BAD693674369832FF2DFBF9FDBCFBB4" blockId="17.[136,1452,1024,1661]" pageId="17" pageNumber="64">
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<emphasis id="B966B52474369832FF2DFBF9FEABFBCC" bold="true" box="[136,284,1024,1049]" pageId="17" pageNumber="64">Description:</emphasis>
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Young cells are spherical or sometimes irregular with relative thick cell wall, 6.4–7.3 μm in size. Chloroplast by young cells saucer-shaped, covers a little bit more than a half of the cell; with a single pyrenoid surrounded by many starch grains.
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</paragraph>
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<paragraph id="8BAD693674369832FF18FB95FD88FAC0" blockId="17.[136,1452,1024,1661]" pageId="17" pageNumber="64">Mature vegetative cells are spherical 9.1–10.0 μm, sometimes 11.8 μm in diameter, with cup-shaped chloroplast, sometimes slightly removed from the cell wall in the bottom part of the cell and occupied the middle position of the cell; chloroplast relatively thick, green or yellowish-green. Cells with numerous, colorless vacuoles. Old cells are spherical, 10.9–13.6 μm in size, sometimes up to 17,3 μm, with reduced small chloroplast, cells contain several vacuoles and fill around 1/3 of the cell.</paragraph>
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<paragraph id="8BAD693674369832FF18FAD9FAB8FA54" blockId="17.[136,1452,1024,1661]" pageId="17" pageNumber="64">
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Reproduction is by 2-4-8 unequal autospores. Autosporangia are spherical or very often irregular, (8.2)–9.1–10.0 μm, sometimes they can reach 16.4–20.9 μm. Large autospores 6.4–7.3 μm, (up to 10.0 μm), small autospores 3.7–5.4 μm in size. SSU and ITS rDNA sequences (GenBank: MH780940) and ITS-2 Barcode BC-3a in
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<figureCitation id="132975B374369832FB63FA91FABDFA54" box="[1222,1290,1384,1409]" captionStart="FIGURE 3" captionStartId="9.[136,229,1113,1134]" captionTargetBox="[171,1421,208,1067]" captionTargetId="figure-14@9.[151,1436,187,1085]" captionTargetPageId="9" captionText="FIGURE 3. Comparison of the conserved region of ITS-2 among the species of Jaagichlorella and Kalinella. Extraction of this region and translation into a number code for its usage as barcode. The ‘/’ indicated the position of the site loop in Helix III, which we excluded from the barcode. Number code for each base pair: 1 = A-U; 2 = U-A; 3 = G-C; 4 = C-G; 5 = G•U; 6 = U•G; 7 = pyrimidine-pyrimidine mismatch; 8 = deletion, single or unpaired bases. The phylogenetic tree shown was calculated using the neighbor-joining method based on the data set (69 number-coded positions of 11 haplotypes) using PAUP 4.0b10." figureDoi="http://doi.org/10.5281/zenodo.13725508" httpUri="https://zenodo.org/record/13725508/files/figure.png" pageId="17" pageNumber="64">Fig. 3</figureCitation>
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.
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</paragraph>
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</subSubSection>
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<subSubSection id="C3083ABD74369832FF18FA75FC48F9C4" pageId="17" pageNumber="64" type="materials_examined">
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<paragraph id="8BAD693674369832FF18FA75FD55FA70" blockId="17.[136,1452,1024,1661]" box="[189,738,1420,1445]" pageId="17" pageNumber="64">
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<emphasis id="B966B52474369832FF18FA75FEE8FA70" bold="true" box="[189,351,1420,1445]" pageId="17" pageNumber="64">Type locality:</emphasis>
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Lithophytic on rocks in
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<collectingCountry id="F30529A674369832FDD1FA75FD69FA70" box="[628,734,1420,1445]" name="Germany" pageId="17" pageNumber="64">Germany</collectingCountry>
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.
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</paragraph>
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<paragraph id="8BAD693674369832FF18FA49FC11FA38" blockId="17.[136,1452,1024,1661]" pageId="17" pageNumber="64">
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<materialsCitation id="3B7A636B74369832FF18FA49FC11FA38" collectionCode="SAG" country="Germany" location="Culture Collection of Algae" municipality="University of Gottingen" pageId="17" pageNumber="64" specimenCode="SAG 2133" specimenCount="1" typeStatus="holotype">
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<emphasis id="B966B52474369832FF18FA49FE9DFA1C" bold="true" box="[189,298,1456,1481]" pageId="17" pageNumber="64">
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<typeStatus id="54A9D79474369832FF18FA49FE9DFA1C" box="[189,298,1456,1481]" pageId="17" pageNumber="64" type="holotype">Holotype</typeStatus>
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</emphasis>
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(designated here): The authentic strain
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<specimenCode id="DBB4C14D74369832FD4EFA49FCD5FA1C" box="[747,866,1456,1481]" collectionCode="SAG" country="Germany" httpUri="http://grbio.org/cool/2vvw-hn58" name="Sammlung von Algenkulturen at Universitat Gottingen" pageId="17" pageNumber="64">SAG 2133</specimenCode>
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is cryopreserved in a metabolic inactive state at the
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<location id="8ECD3FED74369832FF2DFA2DFE08FA38" LSID="urn:lsid:plazi:treatment:03BBD82074369832FF2DFC4FFEB6F9A8:8ECD3FED74369832FF2DFA2DFE08FA38" box="[136,447,1492,1517]" country="Germany" municipality="University of Gottingen" name="Culture Collection of Algae" pageId="17" pageNumber="64">Culture Collection of Algae</location>
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(
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<collectionCode id="ED03F1F374369832FE68FA2DFDBDFA38" box="[461,522,1492,1517]" country="Germany" httpUri="http://grbio.org/cool/2vvw-hn58" name="Sammlung von Algenkulturen at Universitat Gottingen" pageId="17" pageNumber="64">SAG</collectionCode>
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),
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<collectingMunicipality id="6BC9F34C74369832FDBBFA2DFC9AFA38" box="[542,813,1492,1517]" pageId="17" pageNumber="64">University of Göttingen</collectingMunicipality>
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,
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<collectingCountry id="F30529A674369832FC9DFA2DFC15FA38" box="[824,930,1492,1517]" name="Germany" pageId="17" pageNumber="64">Germany</collectingCountry>
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.
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</materialsCitation>
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</paragraph>
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<paragraph id="8BAD693674369832FF18FA01FC48F9C4" blockId="17.[136,1452,1024,1661]" box="[189,1023,1528,1553]" pageId="17" pageNumber="64">
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<emphasis id="B966B52474369832FF18FA01FE84F9C4" bold="true" box="[189,307,1528,1553]" pageId="17" pageNumber="64">
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<typeStatus id="54A9D79474369832FF18FA01FE84F9C4" box="[189,307,1528,1553]" pageId="17" pageNumber="64" type="iconotype">Iconotype</typeStatus>
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</emphasis>
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(designated here to support the
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<typeStatus id="54A9D79474369832FD3EFA01FCB4F9C4" box="[667,771,1528,1553]" pageId="17" pageNumber="64" type="holotype">holotype</typeStatus>
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):
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<figureCitation id="132975B374369832FCB0FA01FCDEF9C4" box="[789,873,1528,1553]" captionStart="FIGURE 5" captionStartId="11.[136,229,1427,1448]" captionTargetBox="[189,1398,190,1402]" captionTargetId="figure-14@11.[189,1398,190,1402]" captionTargetPageId="11" captionText="FIGURE 5. Morphology and phenotypic plasticity of Jaagichlorella roystonensis var. epilithica (SAG 2133; A.–H.) and J. roystonensis var. handai (SAG 2198; I.–G‘.); scale bar = 10 μm." figureDoi="http://doi.org/10.5281/zenodo.13725512" httpUri="https://zenodo.org/record/13725512/files/figure.png" pageId="17" pageNumber="64">Fig. 5C</figureCitation>
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in this study.
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</paragraph>
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</subSubSection>
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<subSubSection id="C3083ABD74369832FF18F9E5FC7AF9E0" box="[189,973,1564,1589]" pageId="17" pageNumber="64" type="etymology">
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<paragraph id="8BAD693674369832FF18F9E5FC7AF9E0" blockId="17.[136,1452,1024,1661]" box="[189,973,1564,1589]" pageId="17" pageNumber="64">
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<emphasis id="B966B52474369832FF18F9E5FE89F9E0" bold="true" box="[189,318,1564,1589]" pageId="17" pageNumber="64">Etymology</emphasis>
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: The epithet of this
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<taxonomicName id="4C1212B574369832FD85F9E5FD6EF9E0" box="[544,729,1564,1589]" pageId="17" pageNumber="64" rank="variety" variety="indicates">variety indicates</taxonomicName>
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its epilithic life style.
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</paragraph>
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</subSubSection>
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<subSubSection id="C3083ABD74369832FF18F9B9FEB6F9A8" pageId="17" pageNumber="64" type="discussion">
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<paragraph id="8BAD693674369832FF18F9B9FEB6F9A8" blockId="17.[136,1452,1024,1661]" pageId="17" pageNumber="64">
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<emphasis id="B966B52474369832FF18F9B9FE8AF98C" bold="true" box="[189,317,1600,1625]" pageId="17" pageNumber="64">Comment:</emphasis>
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Differs from the
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<typeStatus id="54A9D79474369832FE59F9B9FD9BF98C" box="[508,556,1600,1625]" pageId="17" pageNumber="64">type</typeStatus>
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variety by ecology and differences in the variable regions of SSU and ITS rDNA sequences.
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |