215 lines
27 KiB
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215 lines
27 KiB
XML
<document id="6FD216E8405585680D8B2E97E3681E4F" ID-DOI="10.11646/phytotaxa.606.2.1" ID-ISSN="1179-3163" ID-Zenodo-Dep="8202610" IM.bibliography_approvedBy="jonas" IM.illustrations_approvedBy="jonas" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_approvedBy="jonas" IM.taxonomicNames_approvedBy="felipe" IM.treatments_approvedBy="jonas" checkinTime="1690879740706" checkinUser="plazi" docAuthor="Macagnan, Leonardo B., Venturin, Claudia S., Azevedo, Marina L., Harvey, Adela & Gurgel, C. Frederico D." docDate="2023" docId="03F187C8FF9AFFD5FF4CFE548A32FC0D" docLanguage="en" docName="phytotaxa.606.2.1.pdf" docOrigin="Phytotaxa 606 (2)" docSource="http://dx.doi.org/10.11646/phytotaxa.606.2.1" docStyle="DocumentStyle:96748F8F1B6C902996E134952A3A36B9.6:Phytotaxa.2014-.journal_article" docStyleId="96748F8F1B6C902996E134952A3A36B9" docStyleName="Phytotaxa.2014-.journal_article" docStyleVersion="6" docTitle="Jania sagittata Blainville" docType="treatment" docVersion="1" lastPageNumber="99" masterDocId="FFC8FFB0FF96FFD9FFF1FFEA8E02FFA1" masterDocTitle="Molecular systematics of Jania species (Corallinales, Rhodophyta) from south-eastern Australia based on cox 1 and psbA DNA sequence analyses" masterLastPageNumber="103" masterPageNumber="87" pageNumber="99" updateTime="1691525050864" updateUser="jonas" zenodo-license-figures="UNSPECIFIED" zenodo-license-treatments="UNSPECIFIED">
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<mods:title id="4C0BEC90D466C3C5D0473A5A8EA60068">Molecular systematics of Jania species (Corallinales, Rhodophyta) from south-eastern Australia based on cox 1 and psbA DNA sequence analyses</mods:title>
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<mods:namePart id="C89468FD89E8A28C9661E678F25CB4A4">Macagnan, Leonardo B.</mods:namePart>
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<mods:affiliation id="B0B687D99F754BD80018299AE1CFA930">Universidade Federal de Santa Catarina, Centro de Cie ̂ ncias Biolo ́ gicas, Departamento de Bota ̂ nica, Floriano ́ polis, SC 88040 - 900, Brazil</mods:affiliation>
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<mods:namePart id="F1385E3422D61E8EA16BF11C18FECCAB">Venturin, Claudia S.</mods:namePart>
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<mods:affiliation id="FD554F993D613D4B2B8A63C50699F4F3">Universidade Federal de Santa Catarina, Centro de Cie ̂ ncias Biolo ́ gicas, Departamento de Bota ̂ nica, Floriano ́ polis, SC 88040 - 900, Brazil</mods:affiliation>
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<mods:namePart id="7CC8BCFAC486156A551644DD523D2782">Azevedo, Marina L.</mods:namePart>
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<mods:affiliation id="7A74C5E9109D6911D0F4847D46F19865">Universidade Federal de Santa Catarina, Centro de Cie ̂ ncias Biolo ́ gicas, Departamento de Bota ̂ nica, Floriano ́ polis, SC 88040 - 900, Brazil</mods:affiliation>
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<mods:namePart id="DCF0B5C2BB3287CFA11ECFFA834694F6">Harvey, Adela</mods:namePart>
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<mods:affiliation id="D93A0A143095684699792E38F438DDB0">La Trobe University, Department of Environment and Genetics, Plenty Road, Bundoora, Vic. 3083, Australia</mods:affiliation>
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<mods:namePart id="048822F68C6EC7BD87CBFBBEFE49FB4D">Gurgel, C. Frederico D.</mods:namePart>
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<mods:affiliation id="3D02379F09CC9EA06351C1B513429C7E">Universidade Federal do Rio de Janeiro, Instituto de Biodiversidade e Sustentabilidade - NUPEM, Macaé, RJ 27965 - 045, Brazil & Former address: The University of Adelaide, School of Biological Sciences, Adelaide SA 5000, Australia; State Herbarium of South Australia, Department for Environment and Water, SA Government, PO Box 2732, Kent Town, SA 5071, Australia; & SARDI Aquatic Sciences, Department of Primary Industries & Regions, SA Government, PO Box 120, Henley Beach SA 5022, Australia. Corresponding author: fredgurgel @ nupem. ufrj. br</mods:affiliation>
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<mods:title id="20B70E7AE8AF6747600AA76A0BC9A3BD">Phytotaxa</mods:title>
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<mods:part id="7F2E00B507CDDF35706740AB8D57B493">
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<mods:date id="904D2559E7ACEB86B8AD23C3810EC936">2023</mods:date>
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<mods:number id="1C0069E1B58E9C63BB8C9841F0E32085">2023-07-28</mods:number>
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<mods:number id="31ADBB60B636EB91C4046E92969E9773">606</mods:number>
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<mods:start id="5C1C756733724F16A58373412271434F">87</mods:start>
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<mods:url id="29012BE1308107009ABD63BFEB66FB93">http://dx.doi.org/10.11646/phytotaxa.606.2.1</mods:url>
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<mods:classification id="52DFE92AA5B7794A26AB2F5BC4D400CC">journal article</mods:classification>
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<mods:identifier id="955858FE996955EDD633CCDB98963A1E" type="DOI">10.11646/phytotaxa.606.2.1</mods:identifier>
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<mods:identifier id="0DCDBEB8014861C40FAA82040D12622B" type="ISSN">1179-3163</mods:identifier>
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<mods:identifier id="A482CAF774E4041D04C9AA46D0A7D899" type="Zenodo-Dep">8202610</mods:identifier>
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<treatment id="03F187C8FF9AFFD5FF4CFE548A32FC0D" LSID="urn:lsid:plazi:treatment:03F187C8FF9AFFD5FF4CFE548A32FC0D" httpUri="http://treatment.plazi.org/id/03F187C8FF9AFFD5FF4CFE548A32FC0D" lastPageNumber="99" pageId="12" pageNumber="99">
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<subSubSection id="C3426555FF9AFFD5FF4CFE548CB7FE79" box="[189,693,446,472]" pageId="12" pageNumber="99" type="nomenclature">
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<paragraph id="8BE736DEFF9AFFD5FF4CFE548CB7FE79" blockId="12.[136,1452,158,2021]" box="[189,693,446,472]" pageId="12" pageNumber="99">
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<taxonomicName id="4C584D5DFF9AFFD5FF4CFE548CB7FE79" authority="(J. V. Lamouroux) Blainville" authorityName="Blainville" baseAuthorityName="J. V. Lamouroux" box="[189,693,446,472]" family="Corallinaceae" genus="Jania" kingdom="Plantae" order="Cryptonemiales" pageId="12" pageNumber="99" phylum="Rhodophyta" rank="species" species="sagittata">
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<emphasis id="B92CEACCFF9AFFD5FF4CFE548F6CFE79" bold="true" box="[189,366,446,472]" italics="true" pageId="12" pageNumber="99">Jania sagittata</emphasis>
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(J.V.Lamouroux) Blainville
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</taxonomicName>
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</paragraph>
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</subSubSection>
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<subSubSection id="C3426555FF9AFFD5FD47FE548A32FC0D" pageId="12" pageNumber="99" type="discussion">
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<paragraph id="8BE736DEFF9AFFD5FD47FE548CCAFD59" blockId="12.[136,1452,158,2021]" pageId="12" pageNumber="99">
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—
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<taxonomicName id="4C584D5DFF9AFFD5FD22FE558D83FE79" box="[723,897,447,472]" family="Corallinaceae" genus="Jania" kingdom="Plantae" order="Cryptonemiales" pageId="12" pageNumber="99" phylum="Rhodophyta" rank="species" species="sagittata">
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<emphasis id="B92CEACCFF9AFFD5FD22FE558D83FE79" box="[723,897,447,472]" italics="true" pageId="12" pageNumber="99">Jania sagittata</emphasis>
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</taxonomicName>
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is considered a worldwide distributed species (
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<bibRefCitation id="EFC94B2FFF9AFFD5FF61FE088FADFE5D" author="Johansen, H. W. & Silva, P. C." box="[144,431,482,508]" pageId="12" pageNumber="99" pagination="413 - 417" refId="ref12692" refString="Johansen, H. W. & Silva, P. C. (1978) Janieae and Lithotricheae: two new tribes of articulated Corallinaceae (Rhodophyta). Phycologia 17 (4): 413 - 417. https: // doi. org / 10.2216 / i 0031 - 8884 - 17 - 4 - 413.1" type="journal article" year="1978">Johansen and Silva 1978</bibRefCitation>
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,
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<bibRefCitation id="EFC94B2FFF9AFFD5FE4DFE088CBDFE5D" author="Guiry, M. D. & Guiry, G. M." box="[444,703,482,508]" pageId="12" pageNumber="99" refId="ref12254" refString="Guiry, M. D. & Guiry, G. M. (2022) [continuously updated] AlgaeBase. World-wide electronic publication, National University of Ireland, Galway. Available from: https: // www. algaebase. org (accessed 27 July 2023)" type="url" year="2022">Guiry and Guiry 2022</bibRefCitation>
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||
). Its typical morphology has been reported in temperate
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<collectingCountry id="F34F764EFF9AFFD5FAB4FE088BAEFE5D" box="[1349,1452,482,508]" name="Australia" pageId="12" pageNumber="99">Australia</collectingCountry>
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including
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<collectingRegion id="499CF83CFF9AFFD5FF08FDEC8F65FD81" box="[249,359,518,544]" country="Australia" name="Tasmania" pageId="12" pageNumber="99">Tasmania</collectingRegion>
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,
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<collectingCountry id="F34F764EFF9AFFD5FE83FDEC8FBBFD81" box="[370,441,518,544]" name="Brazil" pageId="12" pageNumber="99">Brazil</collectingCountry>
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,
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<collectingCountry id="F34F764EFF9AFFD5FE34FDEC8C37FD81" box="[453,565,518,544]" name="Indonesia" pageId="12" pageNumber="99">Indonesia</collectingCountry>
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,
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<collectingCountry id="F34F764EFF9AFFD5FDB1FDED8C8EFD80" box="[576,652,519,545]" name="Kenya" pageId="12" pageNumber="99">Kenya</collectingCountry>
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,
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<collectingCountry id="F34F764EFF9AFFD5FD66FDEC8D05FD81" box="[663,775,518,544]" name="Mauritius" pageId="12" pageNumber="99">Mauritius</collectingCountry>
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,
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<collectingCountry id="F34F764EFF9AFFD5FCE3FDED8DAEFD81" box="[786,940,518,545]" name="New Zealand" pageId="12" pageNumber="99">New Zealand</collectingCountry>
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,
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<collectingCountry id="F34F764EFF9AFFD5FC46FDEC8A3AFD81" box="[951,1080,518,544]" name="Philippines" pageId="12" pageNumber="99">Philippines</collectingCountry>
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,
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<collectingCountry id="F34F764EFF9AFFD5FBB2FDEC8AA0FD81" box="[1091,1186,518,544]" name="Somalia" pageId="12" pageNumber="99">Somalia</collectingCountry>
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, and
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<collectingCountry id="F34F764EFF9AFFD5FB2CFDEC8B6EFD81" box="[1245,1388,518,544]" name="South Africa" pageId="12" pageNumber="99">South Africa</collectingCountry>
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(
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<bibRefCitation id="EFC94B2FFF9AFFD5FA8AFDEC8F03FDE5" author="Farr, T. & Broom, J. & Hart, D. & Neill, K. & Nelson, W." pageId="12" pageNumber="99" refId="ref12029" refString="Farr, T., Broom, J., Hart, D., Neill, K. & Nelson, W. (2009) Common coralline algae of northern New Zealand: An identification guide. NIWA Information Series 125." type="book" year="2009">
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Farr
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<emphasis id="B92CEACCFF9AFFD5FF79FDC18EC2FDE5" box="[136,192,554,580]" italics="true" pageId="12" pageNumber="99">et al.</emphasis>
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2009
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||
</bibRefCitation>
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||
,
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<bibRefCitation id="EFC94B2FFF9AFFD5FEFAFDC18FDCFDE5" author="Harvey, A. S. & Woelkerling, W. J. & De Reviers, B." box="[267,478,554,581]" pageId="12" pageNumber="99" pagination="221 - 277" refId="ref12396" refString="Harvey, A. S., Woelkerling, W. J. & De Reviers, B. (2020) A taxonomic analysis of Jania (Corallinaceae, Rhodophyta) in south-eastern Australia. Australian Systematic Botany 33 (3): 221 - 277. https: // doi. org / 10.1071 / SB 18064" type="journal article" year="2020">
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Harvey
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<emphasis id="B92CEACCFF9AFFD5FE95FDC18F99FDE5" box="[356,411,554,580]" italics="true" pageId="12" pageNumber="99">et al.</emphasis>
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2020
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||
</bibRefCitation>
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||
). However, according to
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<bibRefCitation id="EFC94B2FFF9AFFD5FD02FDC18DD5FDE5" author="Harvey, A. S. & Woelkerling, W. J. & De Reviers, B." box="[755,983,554,581]" pageId="12" pageNumber="99" pagination="221 - 277" refId="ref12396" refString="Harvey, A. S., Woelkerling, W. J. & De Reviers, B. (2020) A taxonomic analysis of Jania (Corallinaceae, Rhodophyta) in south-eastern Australia. Australian Systematic Botany 33 (3): 221 - 277. https: // doi. org / 10.1071 / SB 18064" type="journal article" year="2020">
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Harvey
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<emphasis id="B92CEACCFF9AFFD5FCBDFDC18D86FDE5" box="[844,900,554,580]" italics="true" pageId="12" pageNumber="99">et al.</emphasis>
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||
(2020)
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||
</bibRefCitation>
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||
, ‘Most published records and geographicdistribution statements for
|
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<taxonomicName id="4C584D5DFF9AFFD5FE4CFDA58C3FFDC9" box="[445,573,591,616]" family="Corallinaceae" genus="Jania" kingdom="Plantae" order="Cryptonemiales" pageId="12" pageNumber="99" phylum="Rhodophyta" rank="species" species="sagittata">
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<emphasis id="B92CEACCFF9AFFD5FE4CFDA58C3FFDC9" box="[445,573,591,616]" italics="true" pageId="12" pageNumber="99">J. sagittata</emphasis>
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</taxonomicName>
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require verification by voucher specimen examination’. The
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<taxonomicName id="4C584D5DFF9AFFD5FAF0FDA58B2AFDC9" box="[1281,1320,591,616]" family="Corallinaceae" genus="Jania" kingdom="Plantae" order="Cryptonemiales" pageId="12" pageNumber="99" phylum="Rhodophyta" rank="species" species="cox">
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||
<emphasis id="B92CEACCFF9AFFD5FAF0FDA58B2AFDC9" box="[1281,1320,591,616]" italics="true" pageId="12" pageNumber="99">cox</emphasis>
|
||
</taxonomicName>
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||
1 and
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<taxonomicName id="4C584D5DFF9AFFD5FA83FDA48B9BFDC9" box="[1394,1433,590,616]" family="Corallinaceae" genus="Jania" kingdom="Plantae" order="Cryptonemiales" pageId="12" pageNumber="99" phylum="Rhodophyta" rank="species" species="psb">
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<emphasis id="B92CEACCFF9AFFD5FA83FDA48B9BFDC9" box="[1394,1433,590,616]" italics="true" pageId="12" pageNumber="99">psb</emphasis>
|
||
</taxonomicName>
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||
<collectionCode id="ED49AE1BFF9AFFD5FA68FDA48BAEFDC9" box="[1433,1452,590,616]" country="USA" lsid="urn:lsid:biocol.org:col:15406" name="Harvard University - Arnold Arboretum" pageId="12" pageNumber="99" type="Herbarium">A</collectionCode>
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||
results here agree with published molecular data (
|
||
<bibRefCitation id="EFC94B2FFF9AFFD5FD2DFD988A07FD2D" author="Hind, K. R. & Saunders, G. W." box="[732,1029,626,652]" pageId="12" pageNumber="99" pagination="103 - 114" refId="ref12556" refString="Hind, K. R. & Saunders, G. W. (2013) A molecular phylogenetic study of the tribe Corallineae (Corallinales, Rhodophyta) with an assessment of genus - level taxonomic features and descriptions of novel genera. Journal of Phycology 49 (1): 103 - 114. https: // doi. org / 10.1111 / jpy. 12019" type="journal article" year="2013">Hind and Saunders 2013</bibRefCitation>
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||
) that also sequenced and identified Australian specimens morphologically identified as stereotypical
|
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<taxonomicName id="4C584D5DFF9AFFD5FC92FD7D8DDDFD11" box="[867,991,663,688]" family="Corallinaceae" genus="Jania" kingdom="Plantae" order="Cryptonemiales" pageId="12" pageNumber="99" phylum="Rhodophyta" rank="species" species="sagittata">
|
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<emphasis id="B92CEACCFF9AFFD5FC92FD7D8DDDFD11" box="[867,991,663,688]" italics="true" pageId="12" pageNumber="99">J. sagittata</emphasis>
|
||
</taxonomicName>
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||
in
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||
<collectingCountry id="F34F764EFF9AFFD5FBF1FD7C8A65FD11" box="[1024,1127,662,688]" name="Australia" pageId="12" pageNumber="99">Australia</collectingCountry>
|
||
and
|
||
<collectingCountry id="F34F764EFF9AFFD5FB6DFD7D8B37FD11" box="[1180,1333,662,689]" name="New Zealand" pageId="12" pageNumber="99">New Zealand</collectingCountry>
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||
. However, the topotype or
|
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<typeStatus id="54E3887CFF9AFFD5FEC8FD518F6BFD74" box="[313,361,699,725]" pageId="12" pageNumber="99">type</typeStatus>
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||
material of
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<taxonomicName id="4C584D5DFF9AFFD5FE00FD518C6FFD75" box="[497,621,699,724]" family="Corallinaceae" genus="Jania" kingdom="Plantae" order="Cryptonemiales" pageId="12" pageNumber="99" phylum="Rhodophyta" rank="species" species="sagittata">
|
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<emphasis id="B92CEACCFF9AFFD5FE00FD518C6FFD75" box="[497,621,699,724]" italics="true" pageId="12" pageNumber="99">J. sagittata</emphasis>
|
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</taxonomicName>
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from
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<collectingCountry id="F34F764EFF9AFFD5FD43FD508D1DFD75" box="[690,799,698,724]" name="Mauritius" pageId="12" pageNumber="99">Mauritius</collectingCountry>
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has not been analyzed to conclusively confirm the correct application of this name in other parts of the world.
|
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</paragraph>
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||
<paragraph id="8BE736DEFF9AFFD5FF4CFCE88A32FC0D" blockId="12.[136,1452,158,2021]" pageId="12" pageNumber="99">
|
||
All of the phylogenetic and
|
||
<collectionCode id="ED49AE1BFF9AFFD5FE1EFCE88C2EFCBD" box="[495,556,770,796]" country="United Kingdom" httpUri="http://grbio.org/cool/gw1v-bpc3" name="Stroud and District Museum" pageId="12" pageNumber="99">SDM</collectionCode>
|
||
analyses reported here for
|
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<taxonomicName id="4C584D5DFF9AFFD5FCA5FCE98D79FCBD" box="[852,891,771,796]" family="Corallinaceae" genus="Jania" kingdom="Plantae" order="Cryptonemiales" pageId="12" pageNumber="99" phylum="Rhodophyta" rank="species" species="cox">
|
||
<emphasis id="B92CEACCFF9AFFD5FCA5FCE98D79FCBD" box="[852,891,771,796]" italics="true" pageId="12" pageNumber="99">cox</emphasis>
|
||
</taxonomicName>
|
||
1 and
|
||
<taxonomicName id="4C584D5DFF9AFFD5FC4DFCE88DE1FCBD" box="[956,995,770,796]" family="Corallinaceae" genus="Jania" kingdom="Plantae" order="Cryptonemiales" pageId="12" pageNumber="99" phylum="Rhodophyta" rank="species" species="psb">
|
||
<emphasis id="B92CEACCFF9AFFD5FC4DFCE88DE1FCBD" box="[956,995,770,796]" italics="true" pageId="12" pageNumber="99">psb</emphasis>
|
||
</taxonomicName>
|
||
<collectionCode id="ED49AE1BFF9AFFD5FC12FCE88DF4FCBD" box="[995,1014,770,796]" country="USA" lsid="urn:lsid:biocol.org:col:15406" name="Harvard University - Arnold Arboretum" pageId="12" pageNumber="99" type="Herbarium">A</collectionCode>
|
||
markers were consistent in recognizing that all south-eastern Australian and
|
||
<collectingCountry id="F34F764EFF9AFFD5FDD2FCCD8CB8FCE1" box="[547,698,806,833]" name="New Zealand" pageId="12" pageNumber="99">New Zealand</collectingCountry>
|
||
sequenced specimens of
|
||
<taxonomicName id="4C584D5DFF9AFFD5FC29FCCD8A56FCE1" box="[984,1108,807,832]" family="Corallinaceae" genus="Jania" kingdom="Plantae" order="Cryptonemiales" pageId="12" pageNumber="99" phylum="Rhodophyta" rank="species" species="sagittata">
|
||
<emphasis id="B92CEACCFF9AFFD5FC29FCCD8A56FCE1" box="[984,1108,807,832]" italics="true" pageId="12" pageNumber="99">J. sagittata</emphasis>
|
||
</taxonomicName>
|
||
correspond to a single species (
|
||
<figureCitation id="13632A5BFF9AFFD5FF61FCA08EF7FCC5" box="[144,245,842,868]" captionStart-0="FIGURE 1" captionStart-1="FIGURE 2" captionStart-2="FIGURE 3" captionStart-3="FIGURE 4" captionStartId-0="5.[136,229,1918,1940]" captionStartId-1="6.[136,229,1344,1366]" captionStartId-2="7.[136,229,1863,1885]" captionStartId-3="8.[136,229,1086,1108]" captionTargetBox-0="[277,1313,1036,1872]" captionTargetBox-1="[143,739,614,1277]" captionTargetBox-2="[149,1424,196,1818]" captionTargetBox-3="[136,1450,202,1075]" captionTargetId-0="figure-357@5.[273,1314,1032,1890]" captionTargetId-1="graphics-201@6.[134,740,615,1277]" captionTargetId-2="figure-19@7.[143,1444,190,1838]" captionTargetId-3="graphics-30@8.[142,820,237,1023]" captionTargetPageId-0="5" captionTargetPageId-1="6" captionTargetPageId-2="7" captionTargetPageId-3="8" captionText-0="FIGURE 1. Maximum likelihood phylogenetic tree of Jania species (Rhodophyta) based on cox1 gene with focus on specimens from south-eastern Australia. Numbers above branches represent non-parametric bootstrap support (values <70 omitted). Tree tip names are composed by species name, GenBank accession number and specimen locality (for sequences downloaded from GenBank), or species name, herbarium code for all sequenced specimens presented by that sequence, and specimen locality (for sequences produced in this study, all marked in bold). Scale bar = substitutions per site." captionText-1="FIGURE 2. Bayesian phylogenetic tree of Jania species (Rhodophyta) based on cox1 gene with focus on specimens from south-eastern Australia. Numbers above branches represent posterior probabilities (values <0.5 were omitted). Some branches were shortened to fit the figure. Specimens sequenced in this study marked in bold and have their herbarium code identified. Colored columns indicate species delimitation methods results: ABGD; ASAP P (p-value partition), ASAP W (w rank partition); GMYC S (single-threshold), GMYC M (multiple-threshold); PTP B (Bayesian inference), PTP M (Heuristic or Maximum Likelihood); and SPN 95% and 99% of parsimony probability limit. Black column indicates the consensus across all species delimitation results. Numbers below to each column indicate the total number of species partitions for each method or the consensus. Jania squamata in the PTP B result was divided into three different species." captionText-2="FIGURE 3. Maximum likelihood phylogeny of Jania species based on psbA gene focusing on specimens from south-eastern Australia. Numbers above branches represent non-parametric bootstrap support (values <70 omitted). Species names are followed by GenBank accession number and specimen locality (for sequences downloaded from GenBank), or species name, herbarium codes for all specimens sharing that particular haplotype, and specimen locality (marked in bold for sequences produced in this study). Scale bar = substitutions per site." captionText-3="FIGURE 4. Bayesian phylogenetic tree of Jania species based on psbA gene with focus on specimens from south-eastern Australia. Numbers above branches represent posterior probabilities (values <0.5 omitted). Specimens sequenced in this study are marked in bold and have their herbarium code identified. Colored columns indicate species delimitation results: ABGD; ASAP P (p-value partition), ASAP W (w rank partition); GMYC S (single-threshold), GMYC M (multiple-threshold); PTP B (Bayesian inference), PTP M (Heuristic or Maximum Likelihood); and SPN 95% and 99% of parsimony probability limit. Black column indicates the consensus across all species delimitation results. Numbers below each column indicate the total number of species partitions for each method, including the consensus." figureDoi-0="http://doi.org/10.5281/zenodo.8202612" figureDoi-1="http://doi.org/10.5281/zenodo.8202614" figureDoi-2="http://doi.org/10.5281/zenodo.8202616" figureDoi-3="http://doi.org/10.5281/zenodo.8202618" httpUri-0="https://zenodo.org/record/8202612/files/figure.png" httpUri-1="https://zenodo.org/record/8202614/files/figure.png" httpUri-2="https://zenodo.org/record/8202616/files/figure.png" httpUri-3="https://zenodo.org/record/8202618/files/figure.png" pageId="12" pageNumber="99">Figs 1–4</figureCitation>
|
||
). In
|
||
<taxonomicName id="4C584D5DFF9AFFD5FED4FCA18F4EFCC5" box="[293,332,843,868]" family="Corallinaceae" genus="Jania" kingdom="Plantae" order="Cryptonemiales" pageId="12" pageNumber="99" phylum="Rhodophyta" rank="species" species="cox">
|
||
<emphasis id="B92CEACCFF9AFFD5FED4FCA18F4EFCC5" box="[293,332,843,868]" italics="true" pageId="12" pageNumber="99">cox</emphasis>
|
||
</taxonomicName>
|
||
1 phylogenies (
|
||
<figureCitation id="13632A5BFF9AFFD5FE04FCA08C37FCC5" box="[501,565,842,868]" captionStart="FIGURE 1" captionStartId="5.[136,229,1918,1940]" captionTargetBox="[277,1313,1036,1872]" captionTargetId="figure-357@5.[273,1314,1032,1890]" captionTargetPageId="5" captionText="FIGURE 1. Maximum likelihood phylogenetic tree of Jania species (Rhodophyta) based on cox1 gene with focus on specimens from south-eastern Australia. Numbers above branches represent non-parametric bootstrap support (values <70 omitted). Tree tip names are composed by species name, GenBank accession number and specimen locality (for sequences downloaded from GenBank), or species name, herbarium code for all sequenced specimens presented by that sequence, and specimen locality (for sequences produced in this study, all marked in bold). Scale bar = substitutions per site." figureDoi="http://doi.org/10.5281/zenodo.8202612" httpUri="https://zenodo.org/record/8202612/files/figure.png" pageId="12" pageNumber="99">Fig. 1</figureCitation>
|
||
),
|
||
<taxonomicName id="4C584D5DFF9AFFD5FDBDFCA18CC5FCC5" box="[588,711,843,868]" family="Corallinaceae" genus="Jania" kingdom="Plantae" order="Cryptonemiales" pageId="12" pageNumber="99" phylum="Rhodophyta" rank="species" species="sagittata">
|
||
<emphasis id="B92CEACCFF9AFFD5FDBDFCA18CC5FCC5" box="[588,711,843,868]" italics="true" pageId="12" pageNumber="99">J. sagittata</emphasis>
|
||
</taxonomicName>
|
||
was sister to
|
||
<taxonomicName id="4C584D5DFF9AFFD5FCAAFCA18B25FCC5" authority="(Harvey) Kim, Guiry and Choi" authorityName="Kim, Guiry and Choi" baseAuthorityName="Harvey" box="[859,1319,842,868]" family="Corallinaceae" genus="Jania" kingdom="Plantae" order="Cryptonemiales" pageId="12" pageNumber="99" phylum="Rhodophyta" rank="species" species="cultrata">
|
||
<emphasis id="B92CEACCFF9AFFD5FCAAFCA18DCFFCC5" box="[859,973,842,868]" italics="true" pageId="12" pageNumber="99">J. cultrata</emphasis>
|
||
(Harvey) Kim, Guiry and Choi
|
||
</taxonomicName>
|
||
from
|
||
<collectingCountry id="F34F764EFF9AFFD5FA9BFCA08ED2FC29" name="South Africa" pageId="12" pageNumber="99">South Africa</collectingCountry>
|
||
and differed by a 5.8% sequence divergence.
|
||
<emphasis id="B92CEACCFF9AFFD5FD24FC848CFDFC29" box="[725,767,878,904]" italics="true" pageId="12" pageNumber="99">Psb</emphasis>
|
||
<collectionCode id="ED49AE1BFF9AFFD5FD0EFC848D10FC29" box="[767,786,878,904]" country="USA" lsid="urn:lsid:biocol.org:col:15406" name="Harvard University - Arnold Arboretum" pageId="12" pageNumber="99" type="Herbarium">A</collectionCode>
|
||
phylogenies showed that
|
||
<collectingCountry id="F34F764EFF9AFFD5FBC4FC848A9EFC29" box="[1077,1180,878,904]" name="Australia" pageId="12" pageNumber="99">Australia</collectingCountry>
|
||
and
|
||
<collectingCountry id="F34F764EFF9AFFD5FB22FC858B6BFC29" box="[1235,1385,878,905]" name="New Zealand" pageId="12" pageNumber="99">New Zealand</collectingCountry>
|
||
share the same
|
||
<taxonomicName id="4C584D5DFF9AFFD5FF03FC798F6CFC0D" box="[242,366,915,940]" family="Corallinaceae" genus="Jania" kingdom="Plantae" order="Cryptonemiales" pageId="12" pageNumber="99" phylum="Rhodophyta" rank="species" species="sagittata">
|
||
<emphasis id="B92CEACCFF9AFFD5FF03FC798F6CFC0D" box="[242,366,915,940]" italics="true" pageId="12" pageNumber="99">J. sagittata</emphasis>
|
||
</taxonomicName>
|
||
species with 0.81% intraspecific sequence divergence (
|
||
<figureCitation id="13632A5BFF9AFFD5FC2FFC788A20FC0D" box="[990,1058,914,940]" captionStart="FIGURE 3" captionStartId="7.[136,229,1863,1885]" captionTargetBox="[149,1424,196,1818]" captionTargetId="figure-19@7.[143,1444,190,1838]" captionTargetPageId="7" captionText="FIGURE 3. Maximum likelihood phylogeny of Jania species based on psbA gene focusing on specimens from south-eastern Australia. Numbers above branches represent non-parametric bootstrap support (values <70 omitted). Species names are followed by GenBank accession number and specimen locality (for sequences downloaded from GenBank), or species name, herbarium codes for all specimens sharing that particular haplotype, and specimen locality (marked in bold for sequences produced in this study). Scale bar = substitutions per site." figureDoi="http://doi.org/10.5281/zenodo.8202616" httpUri="https://zenodo.org/record/8202616/files/figure.png" pageId="12" pageNumber="99">Fig. 3</figureCitation>
|
||
).
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |