180 lines
16 KiB
XML
180 lines
16 KiB
XML
<document id="D32EC07CA584046AD6A2D4C5C512B8B0" ID-CLB-Dataset="20543" ID-DOI="10.1099/ijsem.0.002886" ID-GBIF-Dataset="1289d439-b362-4154-b687-9ac2739747c2" ID-ISSN="1466-5034" ID-Zenodo-Dep="6223805" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="existingObjects,plazi" IM.taxonomicNames_approvedBy="felipe" checkinTime="1645465723961" checkinUser="felipe" docAuthor="Choi, Kang Duk, Siddiqi, Muhammad Zubair, Liu, Qingmei, Muhammad Shafi, Siddiqi, Durrani, Yasser, Lee, Soon Yeol, Kang, Myung-Suk & Im, Wan Taek" docDate="2018" docId="03A9074F4346FFA6F725F97355FBFBCB" docLanguage="en" docName="IntJSystEvolMicrobiol.68.9.2783-2788.pdf" docOrigin="International Journal of Systematic and Evolutionary Microbiology 68 (9)" docSource="http://dx.doi.org/10.1099/ijsem.0.002886" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.3:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="3" docTitle="Brevibacterium hankyongi Choi & Siddiqi & Liu & Muhammad Shafi & Durrani & Lee & Kang & Im 2018, SP. NOV." docType="treatment" docVersion="8" lastPageNumber="2787" masterDocId="FF907F374345FFA2F41EFFF95777FFB8" masterDocTitle="Brevibacterium hankyongi sp. nov., isolated from compost" masterLastPageNumber="2788" masterPageNumber="2783" pageNumber="2786" updateTime="1699315827410" updateUser="ExternalLinkService">
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<mods:titleInfo id="23EAAFFE91960550D79767CF90D206AF">
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<mods:title id="AB21E0061E86DE54E8C5BCCF860659BA">Brevibacterium hankyongi sp. nov., isolated from compost</mods:title>
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<mods:namePart id="840434969FC90545AFDE6236CEB1776E">Choi, Kang Duk</mods:namePart>
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<mods:namePart id="A34529F98D99FF7B4C6E5D9E5BEF86EB">Siddiqi, Muhammad Zubair</mods:namePart>
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</mods:name>
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<mods:roleTerm id="FD1AF0DB450B4EB00B6EE7CD54B28581">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="5C89BF0D2D19A342CA0B7F328A779293">Liu, Qingmei</mods:namePart>
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</mods:name>
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<mods:name id="AAC85DA658E1E56675ADF0340CEDA14D" type="personal">
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<mods:roleTerm id="CF0F4316D8C7F138BBC460100F7678ED">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="FD3B13A5855253CC282CCABC142A9F38">Muhammad Shafi, Siddiqi</mods:namePart>
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</mods:name>
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<mods:roleTerm id="05613A392CA4513F7DE7FA2CF66448AF">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="625178245FC26B574A0EA6E247C44EEA">Durrani, Yasser</mods:namePart>
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</mods:name>
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<mods:roleTerm id="4A8FE5DECE8417DCBC8B859DC732839E">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="970B5211F9F002597F933161018DB0C0">Lee, Soon Yeol</mods:namePart>
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</mods:name>
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<mods:roleTerm id="095CBB035EA5E7C5971EF1670B527FF4">Author</mods:roleTerm>
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<mods:namePart id="FCB855B8E80093AD27253844E50CBDA5">Kang, Myung-Suk</mods:namePart>
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</mods:role>
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<mods:namePart id="7B7994C1A83DFDB8E898582057BA021D">Im, Wan Taek</mods:namePart>
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<mods:typeOfResource id="199C57164D2C548D7CD0FA3BFC49ED11">text</mods:typeOfResource>
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<mods:title id="3BFEE1CA67B66094090EBF4BBCB0F511">International Journal of Systematic and Evolutionary Microbiology</mods:title>
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</mods:titleInfo>
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<mods:part id="7AD58EA7AFBBA10AD87DBB8C6C64EEFF">
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<mods:date id="EFF7AFA25783AF2953DF3809D843D1AD">2018</mods:date>
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<mods:number id="6A4B08FF77C8593F57D4161B715D7B9B">2018-09-01</mods:number>
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<mods:number id="2D0D7CC04452220F4B06E3E68D892CD7">68</mods:number>
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<mods:url id="7D59B037F8BC4180090E73BF3D297583">http://dx.doi.org/10.1099/ijsem.0.002886</mods:url>
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<mods:classification id="6BE2481EDD09FBD2143A900242DFACB8">journal article</mods:classification>
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<mods:identifier id="93267EB2B9B23B6514DFDDA57A45F31F" type="CLB-Dataset">20543</mods:identifier>
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<mods:identifier id="67EB2583DAE83F7DB65E8A5895A2A819" type="DOI">10.1099/ijsem.0.002886</mods:identifier>
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<mods:identifier id="BA75830F6919047879DFD99CE80F6447" type="GBIF-Dataset">1289d439-b362-4154-b687-9ac2739747c2</mods:identifier>
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<mods:identifier id="066BEC7738CBB5A922C848A2B64F4628" type="ISSN">1466-5034</mods:identifier>
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<mods:identifier id="141B86AFC0AE36BA200D923DBC9236D5" type="Zenodo-Dep">6223805</mods:identifier>
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<treatment id="03A9074F4346FFA6F725F97355FBFBCB" ID-DOI="http://doi.org/10.5281/zenodo.6314469" ID-GBIF-Taxon="193437570" ID-Zenodo-Dep="6314469" LSID="urn:lsid:plazi:treatment:03A9074F4346FFA6F725F97355FBFBCB" httpUri="http://treatment.plazi.org/id/03A9074F4346FFA6F725F97355FBFBCB" lastPageId="4" lastPageNumber="2787" pageId="3" pageNumber="2786">
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<subSubSection id="C31AE5D24346FFA1F725F9735315F974" pageId="3" pageNumber="2786" type="nomenclature">
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<paragraph id="8BBFB6594346FFA1F725F9735315F974" blockId="3.[827,1465,1674,1949]" pageId="3" pageNumber="2786">
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<heading id="D0F701354346FFA1F725F9735315F974" allCaps="true" bold="true" fontSize="12" level="2" pageId="3" pageNumber="2786" reason="3">
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<emphasis id="B9746A4B4346FFA1F725F9735315F974" bold="true" pageId="3" pageNumber="2786">
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DESCRIPTION OF
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<taxonomicName id="4C00CDDA4346FFA1F02EF97354AAF974" authority="Choi & Siddiqi & Liu & Muhammad Shafi & Durrani & Lee & Kang & Im, 2018" authorityName="Choi & Siddiqi & Liu & Muhammad Shafi & Durrani & Lee & Kang & Im" authorityYear="2018" class="Actinobacteridae" family="Brevibacteriaceae" genus="Brevibacterium" kingdom="Bacteria" order="Actinomycetales" pageId="3" pageNumber="2786" phylum="Actinobacteria" rank="species" species="hankyongi" status="sp. nov.">
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<emphasis id="B9746A4B4346FFA1F02EF97354AAF974" bold="true" italics="true" pageId="3" pageNumber="2786">BREVIBACTERIUM HANKYONGI</emphasis>
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</taxonomicName>
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<taxonomicNameLabel id="A247D7304346FFA1F7F8F9565315F974" box="[998,1122,1711,1740]" pageId="3" pageNumber="2786" rank="species">SP. NOV.</taxonomicNameLabel>
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</emphasis>
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</heading>
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</paragraph>
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||
</subSubSection>
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<subSubSection id="C31AE5D24346FFA1F725F92254CDF8F7" pageId="3" pageNumber="2786" type="etymology">
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<paragraph id="8BBFB6594346FFA1F725F92254CDF8F7" blockId="3.[827,1465,1674,1949]" pageId="3" pageNumber="2786">
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||
<taxonomicName id="4C00CDDA4346FFA1F725F9225322F94B" authorityName="Choi & Siddiqi & Liu & Muhammad Shafi & Durrani & Lee & Kang & Im" authorityYear="2018" box="[827,1109,1755,1779]" class="Actinobacteridae" family="Brevibacteriaceae" genus="Brevibacterium" kingdom="Bacteria" order="Actinomycetales" pageId="3" pageNumber="2786" phylum="Actinobacteria" rank="species" species="hankyongi">
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<emphasis id="B9746A4B4346FFA1F725F9225322F94B" box="[827,1109,1755,1779]" italics="true" pageId="3" pageNumber="2786">Brevibacterium hankyongi</emphasis>
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</taxonomicName>
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(hank.yong′ i. N.L. gen. n.
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<taxonomicName id="4C00CDDA4346FFA1F199F92254F7F8AA" authorityName="Choi & Siddiqi & Liu & Muhammad Shafi & Durrani & Lee & Kang & Im" authorityYear="2018" class="Actinobacteridae" family="Brevibacteriaceae" genus="Brevibacterium" kingdom="Bacteria" order="Actinomycetales" pageId="3" pageNumber="2786" phylum="Actinobacteria" rank="species" species="hankyongi">
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<emphasis id="B9746A4B4346FFA1F199F92254F7F8AA" italics="true" pageId="3" pageNumber="2786">hankyongi</emphasis>
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</taxonomicName>
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pertaining to Hankyong National University,
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<collectingCountry id="F317F6C94346FFA1F175F90354B7F888" name="South Korea" pageId="3" pageNumber="2786">Republic of Korea</collectingCountry>
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, where taxonomic studies of this taxon were performed).
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</paragraph>
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||
</subSubSection>
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<subSubSection id="C31AE5D24346FFA6F725F89F5571FBBF" lastPageId="4" lastPageNumber="2787" pageId="3" pageNumber="2786" type="description">
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<paragraph id="8BBFB6594346FFA6F725F89F5571FBBF" blockId="3.[827,1465,1674,1949]" lastBlockId="4.[121,759,182,1139]" lastPageId="4" lastPageNumber="2787" pageId="3" pageNumber="2786">
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||
Cells are Gram-positive, strictly aerobic, non-motile and rod shaped (0.3–1.0 µm wide; 1.3–2.8 µm long). Colonies grown on R2A agar plates for 2 days are smooth, convex, opaque and milky-white to creamy in colour. Positive for catalase and oxidase activities. Growth occurs at 18–42
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<superScript id="7C751B114341FFA6F633FF085543FF44" attach="right" box="[557,564,241,252]" fontSize="6" pageId="4" pageNumber="2787">Ǫ</superScript>
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C and pH 6.0–7.0 with 0–6.0 % NaCl (w/v). Does not grow at 15 and 45
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<superScript id="7C751B114341FFA6F6C9FEE955A9FEA3" attach="right" box="[727,734,272,283]" fontSize="6" pageId="4" pageNumber="2787">Ǫ</superScript>
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C. Optimum growth occurs at 30
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<superScript id="7C751B114341FFA6F5DFFED756BFFE81" attach="right" box="[449,456,302,313]" fontSize="6" pageId="4" pageNumber="2787">Ǫ</superScript>
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C and pH 6.5 without NaCl (w/v) supplement. In the API 20NE and ZYM kits, enzyme activity results are positive for alkaline phosphatase, esterase, leucine arylamidase and cystine arylamidase, and negative for nitrate reduction, indole production, glucose acidification, arginine dihydrolase, urease, b- glucosidas, a- galactosidase, b- galactosidase, b- glucuronidase, a- glucosidase, b- glucosidase,
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<emphasis id="B9746A4B4341FFA6F467FDFE57FCFDA6" box="[121,139,519,542]" italics="true" pageId="4" pageNumber="2787">N</emphasis>
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-acetyl-b- glucosaminidase, a- mannosidase, a- fucosidase, trypsin, a- chymotrypsin, acid phosphatase, naphthol-AS-BIphosphohydrolase, valine arylamidase, esterase lipase and lipase. In the API 20NE and 32GN kits, positive assimilated compounds are: malate, citrate, phenyl-acetate, propionate, caprate, 3-hydroxy-butyrate, 4-hydroxy-benzoate, 5-ketogluconate,
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<subScript id="1784B41C4341FFA6F4CDFD3D5793FD6E" attach="right" box="[211,228,702,726]" fontSize="7" pageId="4" pageNumber="2787">L-</subScript>
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histidine,
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<subScript id="1784B41C4341FFA6F57EFD3D5606FD6E" attach="right" box="[352,369,702,726]" fontSize="7" pageId="4" pageNumber="2787">L-</subScript>
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rhamnose,
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<emphasis id="B9746A4B4341FFA6F5E5FD46557AFD6E" box="[507,525,703,726]" italics="true" pageId="4" pageNumber="2787">N</emphasis>
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-
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<subScript id="1784B41C4341FFA6F60AFD475518FD6E" attach="left" box="[532,623,702,726]" fontSize="7" pageId="4" pageNumber="2787">acetyl-D-</subScript>
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glucosamine, sucrose, maltose, suberate, L- alanine, glycogen, 3-hydroxybenzoate and
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<subScript id="1784B41C4341FFA6F514FCF8566CFCAB" attach="right" box="[266,283,763,787]" fontSize="7" pageId="4" pageNumber="2787">L-</subScript>
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serine, and negatively assimilates: acetate, lactate, malonate, itaconate, D- ribose, inositol, L- proline, 2-ketogluconate, salicin, melibiose, L- fucose, D- sorbitol, D- mannitol, D- glucose, L- arbinose, D- mannose, maltose, gluconate, caprate and adipate. The quinones are MK-8(H
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<subScript id="1784B41C4341FFA6F60FFC86556DFC28" attach="left" box="[529,538,895,912]" fontSize="7" pageId="4" pageNumber="2787">2</subScript>
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) and MK-7(H
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<subScript id="1784B41C4341FFA6F6ACFC8655CCFC28" attach="left" box="[690,699,895,912]" fontSize="7" pageId="4" pageNumber="2787">2</subScript>
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), and anteiso-C
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<subScript id="1784B41C4341FFA6F4C5FC675676FC17" attach="left" box="[219,257,926,943]" fontSize="7" pageId="4" pageNumber="2787">15: 0</subScript>
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, anteiso-C
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<subScript id="1784B41C4341FFA6F56AFC6756EDFC17" attach="left" box="[372,410,926,943]" fontSize="7" pageId="4" pageNumber="2787">17: 0</subScript>
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, iso-C
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<subScript id="1784B41C4341FFA6F5FFFC67557FFC17" attach="left" box="[481,520,926,943]" fontSize="7" pageId="4" pageNumber="2787">16: 0</subScript>
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and iso-C
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<subScript id="1784B41C4341FFA6F665FC6755D5FC17" attach="left" box="[635,674,926,943]" fontSize="7" pageId="4" pageNumber="2787">15: 0</subScript>
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are the major cellular fatty acids. The major polar lipids is phosphatidylglycerol. The peptidoglycan of strain BS05
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<superScript id="7C751B114341FFA6F640FC32551DFC64" attach="left" box="[606,618,971,988]" fontSize="7" pageId="4" pageNumber="2787">T</superScript>
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contains the amino acid
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<emphasis id="B9746A4B4341FFA6F4EFFC095653FBBF" box="[241,292,1008,1031]" italics="true" pageId="4" pageNumber="2787">meso</emphasis>
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-diaminopimelic acid.
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</paragraph>
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</subSubSection>
|
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<paragraph id="8BBFB6594346FFA1F532F8765623F818" blockId="3.[121,759,1574,1952]" box="[300,340,1935,1952]" pageId="3" pageNumber="2786">
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<subScript id="1784B41C4346FFA1F532F8765623F818" attach="left" box="[300,340,1935,1952]" fontSize="7" pageId="3" pageNumber="2786">15: 0</subScript>
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</paragraph>
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<subSubSection id="C31AE5D24341FFA6F467FBE755FBFBCB" pageId="4" pageNumber="2787" type="materials_examined">
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<paragraph id="8BBFB6594341FFA6F467FBE755FBFBCB" blockId="4.[121,759,182,1139]" pageId="4" pageNumber="2787">
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<materialsCitation id="3B68BC044341FFA6F467FBE755FBFBCB" ID-GBIF-Occurrence="3470287301" collectionCode="BS" country="South Korea" location="Island" municipality="Island" pageId="4" pageNumber="2787" specimenCode="BS05T" specimenCount="1" stateProvince="Jeju" typeStatus="holotype">
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The
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<typeStatus id="54BB08FB4341FFA6F4B7FBE757A1FB8E" box="[169,214,1054,1078]" pageId="4" pageNumber="2787">type</typeStatus>
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strain, isolated from sea water,
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<collectingRegion id="49C478BB4341FFA6F635FBE75524FB8E" box="[555,595,1054,1078]" country="South Korea" name="Jeju" pageId="4" pageNumber="2787">Jeju</collectingRegion>
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<collectingMunicipality id="6BDB2C234341FFA6F645FBE755E9FB8E" box="[603,670,1054,1078]" pageId="4" pageNumber="2787">Island</collectingMunicipality>
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,
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<collectingCountry id="F317F6C94341FFA6F6B7FBE75781FBEC" name="South Korea" pageId="4" pageNumber="2787">Republic of Korea</collectingCountry>
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, is
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<specimenCode id="DBA61E224341FFA6F507FBC5562CFBFF" box="[281,347,1078,1108]" pageId="4" pageNumber="2787">
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BS05
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<superScript id="7C751B114341FFA6F551FBCF562CFBFF" attach="left" box="[335,347,1078,1095]" fontSize="7" pageId="4" pageNumber="2787">T</superScript>
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</specimenCode>
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(=KACC 18875
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<superScript id="7C751B114341FFA6F60EFBCF556BFBFF" attach="right" box="[528,540,1078,1095]" fontSize="7" pageId="4" pageNumber="2787">T</superScript>
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=LMG 29562
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<superScript id="7C751B114341FFA6F6B5FBCF55C0FBFF" attach="none" box="[683,695,1078,1095]" fontSize="7" pageId="4" pageNumber="2787">T</superScript>
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). The DNA G+C content of the type strain is 62.3 mol%.
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</materialsCitation>
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |