159 lines
11 KiB
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159 lines
11 KiB
XML
<document ID-DOI="10.1016/j.ympev.2021.107115" ID-Zenodo-Dep="6643504" approvalRequired="21" approvalRequired_for_document="1" approvalRequired_for_taxonomicNames="20" checkinTime="1654106955118" checkinUser="diego" docAuthor="Bybee, Seth M., Kalkman, Vincent J., Erickson, Robert J., Frandsen, Paul B., Breinholt, Jesse W., Suvorov, Anton, Dijkstra, Klaas-Douwe B., Cordero-Rivera, Adolfo, Skevington, Jeffrey H., Abbott, John C., Herrera, Melissa Sanchez, Lemmon, Alan R., Lemmon, Emily Moriarty & Ware, Jessica L." docDate="2021" docId="039687E7A86FFFD1E433A97FFF17EAD2" docLanguage="en" docName="MolPhylogenetEvol.160.107115.pdf" docOrigin="Molecular Phylogenetics and Evolution 160" docTitle="Insecta" docType="treatment" docVersion="4" lastPageNumber="7" masterDocId="FFAFFF9FA869FFD7E457AC3AFFA9EC75" masterDocTitle="Phylogeny and classification of Odonata using targeted genomics" masterLastPageNumber="107115" masterPageNumber="107115" pageNumber="7" updateTime="1655236780830" updateUser="ExternalLinkService" zenodo-license-document="CC-BY-NC-ND-4.0">
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<mods:titleInfo>
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<mods:title>Phylogeny and classification of Odonata using targeted genomics</mods:title>
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<mods:name type="personal">
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<mods:roleTerm>Author</mods:roleTerm>
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<mods:namePart>Bybee, Seth M.</mods:namePart>
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<mods:roleTerm>Author</mods:roleTerm>
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<mods:namePart>Kalkman, Vincent J.</mods:namePart>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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<mods:namePart>Erickson, Robert J.</mods:namePart>
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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<mods:namePart>Frandsen, Paul B.</mods:namePart>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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<mods:namePart>Breinholt, Jesse W.</mods:namePart>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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<mods:namePart>Suvorov, Anton</mods:namePart>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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<mods:namePart>Dijkstra, Klaas-Douwe B.</mods:namePart>
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<mods:name type="personal">
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<mods:roleTerm>Author</mods:roleTerm>
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<mods:namePart>Cordero-Rivera, Adolfo</mods:namePart>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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<mods:namePart>Skevington, Jeffrey H.</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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<mods:namePart>Abbott, John C.</mods:namePart>
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<mods:name type="personal">
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<mods:roleTerm>Author</mods:roleTerm>
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<mods:namePart>Herrera, Melissa Sanchez</mods:namePart>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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<mods:namePart>Lemmon, Alan R.</mods:namePart>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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<mods:namePart>Lemmon, Emily Moriarty</mods:namePart>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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<mods:namePart>Ware, Jessica L.</mods:namePart>
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<mods:typeOfResource>text</mods:typeOfResource>
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<mods:titleInfo>
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<mods:title>Molecular Phylogenetics and Evolution</mods:title>
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</mods:titleInfo>
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<mods:part>
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<mods:date>2021</mods:date>
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<mods:detail type="pubDate">
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<mods:number>2021-02-18</mods:number>
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</mods:detail>
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<mods:detail type="volume">
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<mods:number>160</mods:number>
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<mods:start>107115</mods:start>
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<mods:end>107115</mods:end>
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<mods:classification>journal article</mods:classification>
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<mods:identifier type="DOI">10.1016/j.ympev.2021.107115</mods:identifier>
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<mods:identifier type="Zenodo-Dep">6643504</mods:identifier>
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<treatment ID-DOI="http://doi.org/10.5281/zenodo.6604171" ID-Zenodo-Dep="6604171" LSID="urn:lsid:plazi:treatment:039687E7A86FFFD1E433A97FFF17EAD2" httpUri="http://treatment.plazi.org/id/039687E7A86FFFD1E433A97FFF17EAD2" lastPageNumber="7" pageId="6" pageNumber="7">
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<subSubSection box="[100,251,1348,1368]" pageId="6" pageNumber="7" type="nomenclature">
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<paragraph blockId="6.[100,770,1348,1703]" box="[100,251,1348,1368]" pageId="6" pageNumber="7">
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<heading box="[100,251,1348,1368]" level="2" pageId="6" pageNumber="7">
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<emphasis bold="true" box="[100,251,1348,1368]" italics="true" pageId="6" pageNumber="7">
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4.1.1.
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<taxonomicName authority="Fabricius, 1793" box="[167,251,1348,1368]" class="Insecta" kingdom="Animalia" pageId="6" pageNumber="7" phylum="Arthropoda" rank="order">Odonata</taxonomicName>
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</emphasis>
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection box="[257,588,1349,1368]" pageId="6" pageNumber="7" type="multiple">
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<paragraph blockId="6.[100,770,1348,1703]" box="[257,588,1349,1368]" pageId="6" pageNumber="7">
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<emphasis bold="true" box="[257,290,1349,1368]" italics="true" pageId="6" pageNumber="7">(BS</emphasis>
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=
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<emphasis bold="true" box="[321,393,1349,1368]" italics="true" pageId="6" pageNumber="7">100, PP</emphasis>
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=
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<emphasis bold="true" box="[424,475,1349,1368]" italics="true" pageId="6" pageNumber="7">1, QS</emphasis>
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=
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<emphasis bold="true" box="[505,588,1349,1368]" italics="true" pageId="6" pageNumber="7">1/NA/1)</emphasis>
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</paragraph>
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</subSubSection>
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<subSubSection pageId="6" pageNumber="7" type="discussion">
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<paragraph blockId="6.[100,770,1348,1703]" pageId="6" pageNumber="7">
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The overall relationships along the backbone of the phylogeny are closely in line with recent phylogenetic hypotheses for
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<taxonomicName box="[632,712,1405,1424]" class="Odonata" kingdom="Animalia" pageId="6" pageNumber="7" phylum="Arthropoda" rank="class">Odonata</taxonomicName>
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using smaller, Sanger-based, molecular datasets with a similarly sized or larger taxon sample (
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<bibRefCitation author="Bybee, S. M. & Ogden, T. H. & Branham, M. A. & Whiting, M. F." box="[295,462,1460,1480]" journalOrPublisher="Cladistics" pageId="6" pageNumber="7" pagination="477 - 514" part="24" refId="ref16610" refString="Bybee, S. M., Ogden, T. H., Branham, M. A., Whiting, M. F., 2008. Molecules, morphology and fossils: a comprehensive approach to odonate phylogeny and the evolution of the odonate wing. Cladistics 24, 477 - 514." title="Molecules, morphology and fossils: a comprehensive approach to odonate phylogeny and the evolution of the odonate wing" type="journal article" year="2008">Bybee et al., 2008</bibRefCitation>
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;
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<bibRefCitation author="Carle, F. L. & Kjer, K. M. & May, M. L." box="[470,630,1460,1480]" journalOrPublisher="Arthropod Syst. Phylogeny" pageId="6" pageNumber="7" pagination="281 - 301" part="73" refId="ref16803" refString="Carle, F. L., Kjer, K. M., May, M. L., 2015. A molecular phylogeny and classification of Anisoptera (Odonata). Arthropod Syst. Phylogeny 73, 281 - 301." title="A molecular phylogeny and classification of Anisoptera (Odonata)" type="journal article" year="2015">Carle et al., 2015</bibRefCitation>
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,
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<bibRefCitation author="Carle, F. L. & Kjer, K. M. & May, M. L." box="[638,688,1461,1480]" journalOrPublisher="Arthropod Syst. Phylogeny" pageId="6" pageNumber="7" pagination="37 - 44" part="66" refId="ref16847" refString="Carle, F. L., Kjer, K. M., May, M. L., 2008. Evolution of Odonata, with special reference to Coenagrionoidea (Zygoptera). Arthropod Syst. Phylogeny 66, 37 - 44." title="Evolution of Odonata, with special reference to Coenagrionoidea (Zygoptera)" type="journal article" year="2008">2008</bibRefCitation>
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;
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<bibRefCitation author="Dijkstra, K. - D. - B. & Kalkman, V. J. & Dow, R. A. & Stokvis, F. R. & Van Tol, J. A. N." journalOrPublisher="Syst. Entomol." pageId="6" pageNumber="7" pagination="68 - 96" part="39" refId="ref17175" refString="Dijkstra, K. - D. - B., Kalkman, V. J., Dow, R. A., Stokvis, F. R., Van Tol, J. A. N., 2014. Redefining the damselfly families: a comprehensive molecular phylogeny of Z ygoptera (O donata). Syst. Entomol. 39, 68 - 96." title="Redefining the damselfly families: a comprehensive molecular phylogeny of Z ygoptera (O donata)" type="journal article" year="2014">Dijkstra et al., 2014</bibRefCitation>
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;
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<bibRefCitation author="Letsch, H. & Gottsberger, B. & Ware, J. L." box="[219,392,1488,1508]" journalOrPublisher="Mol. Ecol." pageId="6" pageNumber="7" pagination="1340 - 1353" part="25" refId="ref18605" refString="Letsch, H., Gottsberger, B., Ware, J. L., 2016 a. Not going with the flow: a comprehensive time-calibrated phylogeny of dragonflies (Anisoptera: Odonata: Insecta) provides evidence for the role of lentic habitats on diversification. Mol. Ecol. 25 (6), 1340 - 1353." title="Not going with the flow: a comprehensive time-calibrated phylogeny of dragonflies (Anisoptera: Odonata: Insecta) provides evidence for the role of lentic habitats on diversification" type="journal article" year="2016">Letsch et al., 2016</bibRefCitation>
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ab). Our hypothesis differs in that nodal support, both traditional and new approaches, give robust phylogenetic support across the topology (
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<figureCitation box="[382,437,1544,1563]" captionStart="Fig" captionStartId="5.[100,130,1791,1808]" captionTargetBox="[173,1414,165,1754]" captionTargetId="graphics-379@5.[173,969,168,1752]" captionTargetPageId="5" captionText="Fig. 2. AHE topology. Results of the phylogenetic reconstruction of Odonata using loci captured from anchored hybridization enrichment. A) ML and Bayesian phylogenetic reconstruction of the Odonata using 478 loci. AZ in the right hand column represents the suborder Anisozygoptera. See “key to nodal support” for a visual guide to nodal support. Support values of 100 bootstrap and 1.0 posterior probability are not shown. Quartet sampling (QS) that shows full support (1/NA/1) is not shown at the node but all other QS is shown at each node along with a measure of taxon rogueness (QF score) at each branch tip. Bolded GF scores represent the lowest values across the topology. Newly established or reestablished families are shown in grey text. B) A representation of the branch lengths are shown with all three suborders designated." figureDoi="http://doi.org/10.5281/zenodo.6643508" httpUri="https://zenodo.org/record/6643508/files/figure.png" pageId="6" pageNumber="7">Fig. 2</figureCitation>
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). Further, our hypothesis includes nearly all major lineages of
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<taxonomicName box="[366,446,1572,1591]" class="Odonata" kingdom="Animalia" pageId="6" pageNumber="7" phylum="Arthropoda" rank="class">Odonata</taxonomicName>
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and is not only the largest molecular phylogeny to date, but the most phylogenetically inclusive hypothesis of
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<taxonomicName box="[218,298,1628,1647]" class="Odonata" kingdom="Animalia" pageId="6" pageNumber="7" phylum="Arthropoda" rank="class">Odonata</taxonomicName>
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classification. What follows is a more detailed discussion for superfamily or superfamily-level groups across the topology.
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |