621 lines
64 KiB
XML
621 lines
64 KiB
XML
<document id="E8E2612C0BA09C89E02457417C72C5B8" ID-DOI="10.5281/zenodo.189906" ID-GBIF-Dataset="edef0c93-6e0f-4fce-8215-c61c1f02d5ae" ID-ISSN="1175-5326" ID-Zenodo-Dep="189906" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.taxonomicNames_approvedBy="felipe" checkinTime="1461106080151" checkinUser="plazi" docAuthor="Chesser, Terry, Claramunt, Santiago, Derryberry, Elizabeth & Brumfield, Robb T." docDate="2009" docId="03F58782FF914671FF24FAE1FC2AE2A9" docLanguage="en" docName="zt02213p068.pdf" docOrigin="Zootaxa 2213" docStyle="DocumentStyle:890A69B780ED73D6DB8551B71C8AC79E.4:Zootaxa.2009-2012.journal_article" docStyleId="890A69B780ED73D6DB8551B71C8AC79E" docStyleName="Zootaxa.2009-2012.journal_article" docStyleVersion="4" docTitle="Geocerthia Chesser and Claramunt" docType="treatment" docVersion="7" lastPageNumber="67" masterDocId="FFCCFFFAFF914672FFB3FFA2F83CE50C" masterDocTitle="Geocerthia, a new genus of terrestrial ovenbird (Aves: Passeriformes: Furnariidae)" masterLastPageNumber="68" masterPageNumber="64" pageNumber="64" updateTime="1698593060296" updateUser="plazi">
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<mods:mods id="2E82B123A7340695FF80566272491057" xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo id="045E5D09EB31072FF9C40AA1AA5AD839">
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<mods:title id="622A944EED3BCD80F413BC6EB990AB46">Geocerthia, a new genus of terrestrial ovenbird (Aves: Passeriformes: Furnariidae)</mods:title>
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</mods:titleInfo>
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<mods:name id="AC977A395911772C978C9BA9C36661C5" type="personal">
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<mods:role id="A936C61C2A2449D069D7BC6F70E61E17">
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<mods:roleTerm id="542D647E5FF96BE43D1E8FE05B569C82">Author</mods:roleTerm>
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<mods:namePart id="AEA916CA3760787F12EDCE94DA1E33B6">Chesser, Terry</mods:namePart>
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</mods:name>
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<mods:role id="E0BA727F5065B93A148D8E8CFB7671EE">
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<mods:roleTerm id="228C0D6D9950544FFDC88850D02D8AA3">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="E2AAF222037E320EC0BD26D8FF4DA5F3">Claramunt, Santiago</mods:namePart>
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</mods:name>
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<mods:name id="F416A8B2EFF51220C6B2574B4B45F585" type="personal">
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<mods:roleTerm id="E649B4FFD211747CA923473327FA5A7A">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="DC770173CB0131FE8723544046CD529D">Derryberry, Elizabeth</mods:namePart>
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</mods:name>
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<mods:name id="1EB1E55BF121FAE01B95F7F59DCA7696" type="personal">
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<mods:role id="02C7F5D4B35FFA1B18BEC9B09CFD5B9C">
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<mods:roleTerm id="B2C6A0ACEC5C65844E6E4AED1BD27158">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="E6B23CF87E5C63B98B0BF24FDDF81A17">Brumfield, Robb T.</mods:namePart>
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<mods:typeOfResource id="D8AD9831B3793C6C6944CBFB002011D3">text</mods:typeOfResource>
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<mods:titleInfo id="01E732DF6688900ADD51D9CC095CC191">
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<mods:title id="158420F05F436CEF52735C0905A8EC53">Zootaxa</mods:title>
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</mods:titleInfo>
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<mods:part id="44F8CEA61FE15C5F821F9E37BFC1563B">
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<mods:date id="794449A91A68108F7CC594F28534A7E2">2009</mods:date>
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<mods:detail id="BAFF1896552437A2716727C8526EDB0F" type="volume">
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<mods:number id="80C22D7D7FE6F54C373507F40B1699A7">2213</mods:number>
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<mods:start id="127A00C3EEA65878687389A1C009E5E9">64</mods:start>
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<mods:end id="F6B2F005E1EB274C2AC8854591A9ACE6">68</mods:end>
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<mods:classification id="DB1CFF876729AF2806D60D1DB5B0749D">journal article</mods:classification>
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<mods:identifier id="41609124DD44A43086E0B792873B61D0" type="DOI">10.5281/zenodo.189906</mods:identifier>
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<mods:identifier id="FFE6E837CFC27EE1139416D5240B77E5" type="ISSN">1175-5326</mods:identifier>
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<mods:identifier id="E641829F59E2A13B4F495112A9F544C6" type="Zenodo-Dep">189906</mods:identifier>
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<treatment id="03F58782FF914671FF24FAE1FC2AE2A9" ID-DOI="http://doi.org/10.5281/zenodo.6220760" ID-GBIF-Taxon="119623236" ID-Zenodo-Dep="6220760" LSID="urn:lsid:plazi:treatment:03F58782FF914671FF24FAE1FC2AE2A9" httpUri="http://treatment.plazi.org/id/03F58782FF914671FF24FAE1FC2AE2A9" lastPageId="3" lastPageNumber="67" pageId="0" pageNumber="64">
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<subSubSection id="C346651FFF914672FF24FAE1FA90E057" box="[151,684,1347,1371]" pageId="0" pageNumber="64" type="nomenclature">
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<paragraph id="8BE33694FF914672FF24FAE1FA90E057" blockId="0.[151,684,1347,1371]" box="[151,684,1347,1371]" pageId="0" pageNumber="64">
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<heading id="D0AB81F8FF914672FF24FAE1FA90E057" bold="true" box="[151,684,1347,1371]" fontSize="10" level="2" pageId="0" pageNumber="64" reason="2">
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<emphasis id="B928EA86FF914672FF24FAE1FA90E057" bold="true" box="[151,684,1347,1371]" pageId="0" pageNumber="64">
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<taxonomicName id="4C5C4D17FF914672FF24FAE1FA15E057" authority="Chesser and Claramunt" authorityName="Chesser and Claramunt" box="[151,553,1347,1371]" class="Aves" family="Furnariidae" genus="Geocerthia" higherTaxonomySource="GBIF" kingdom="Animalia" order="Passeriformes" pageId="0" pageNumber="64" phylum="Chordata" rank="genus">
|
||
<emphasis id="B928EA86FF914672FF24FAE1F92DE057" bold="true" box="[151,273,1347,1371]" italics="true" pageId="0" pageNumber="64">Geocerthia</emphasis>
|
||
Chesser and Claramunt
|
||
</taxonomicName>
|
||
, genus nov.
|
||
</emphasis>
|
||
</heading>
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="C346651FFF914672FF24FA24FC8DE0CC" pageId="0" pageNumber="64" type="materials_examined">
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<paragraph id="8BE33694FF914672FF24FA24FAE3E091" blockId="0.[151,1438,1414,2027]" box="[151,735,1414,1438]" pageId="0" pageNumber="64">
|
||
<emphasis id="B928EA86FF914672FF24FA24F917E092" bold="true" box="[151,299,1414,1438]" pageId="0" pageNumber="64">
|
||
<typeStatus id="54E78836FF914672FF24FA24F8F3E092" box="[151,207,1414,1438]" pageId="0" pageNumber="64">Type</typeStatus>
|
||
species.
|
||
</emphasis>
|
||
<taxonomicName id="4C5C4D17FF914672FE82FA24FAE7E091" authority="Taczanowski, 1875" authorityName="Taczanowski" authorityYear="1875" box="[305,731,1414,1437]" class="Aves" family="Furnariidae" genus="Upucerthia" kingdom="Animalia" order="Passeriformes" pageId="0" pageNumber="64" phylum="Chordata" rank="species" species="serrana">
|
||
<emphasis id="B928EA86FF914672FE82FA24FA38E091" box="[305,516,1414,1437]" italics="true" pageId="0" pageNumber="64">Upucerthia serrana</emphasis>
|
||
<bibRefCitation id="EFCD4B65FF914672FDB9FA24FAE7E091" author="Taczanowski" box="[522,731,1414,1437]" pageId="0" pageNumber="68" refString="Taczanowski, L. (1875) Liste des oiseaux recueillis par M. Constantin Jelksi dans la partie centrale du Perou occidental. Proceedings of the Zoological Society of London, 1874 (1875), 501 - 564." type="journal article" year="1875">Taczanowski, 1875</bibRefCitation>
|
||
</taxonomicName>
|
||
.
|
||
</paragraph>
|
||
<paragraph id="8BE33694FF914672FF76FA0BFC8DE0CC" blockId="0.[151,1438,1414,2027]" box="[197,1201,1449,1473]" pageId="0" pageNumber="64">
|
||
<emphasis id="B928EA86FF914672FF76FA0BF9BAE0CD" bold="true" box="[197,390,1449,1473]" pageId="0" pageNumber="64">Included species.</emphasis>
|
||
<taxonomicName id="4C5C4D17FF914672FE3FFA0BFB78E0CC" authority="Taczanowski, 1875" authorityName="Taczanowski" authorityYear="1875" box="[396,836,1449,1472]" class="Aves" family="Furnariidae" genus="Geocerthia" higherTaxonomySource="GBIF" kingdom="Animalia" order="Passeriformes" pageId="0" pageNumber="64" phylum="Chordata" rank="species" species="serrana" status="comb. nov.">
|
||
<emphasis id="B928EA86FF914672FE3FFA0BFA62E0CC" box="[396,606,1449,1472]" italics="true" pageId="0" pageNumber="64">Geocerthia serrana</emphasis>
|
||
(
|
||
<bibRefCitation id="EFCD4B65FF914672FDD8FA0BFB07E0CC" author="Taczanowski" box="[619,827,1449,1472]" pageId="0" pageNumber="68" refString="Taczanowski, L. (1875) Liste des oiseaux recueillis par M. Constantin Jelksi dans la partie centrale du Perou occidental. Proceedings of the Zoological Society of London, 1874 (1875), 501 - 564." type="journal article" year="1875">Taczanowski, 1875</bibRefCitation>
|
||
)
|
||
</taxonomicName>
|
||
<emphasis id="B928EA86FF914672FCF9FA0BFBFFE0CC" box="[842,963,1449,1472]" italics="true" pageId="0" pageNumber="64">
|
||
<taxonomicNameLabel id="A21B57FDFF914672FCF9FA0BFB83E0CC" box="[842,959,1449,1472]" pageId="0" pageNumber="64">comb. nov.</taxonomicNameLabel>
|
||
,
|
||
</emphasis>
|
||
Striated Earthcreeper.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="C346651FFF914672FF76FA69FA3FE3BF" pageId="0" pageNumber="64" type="diagnosis">
|
||
<paragraph id="8BE33694FF914672FF76FA69FA3FE3BF" blockId="0.[151,1438,1414,2027]" pageId="0" pageNumber="64">
|
||
<emphasis id="B928EA86FF914672FF76FA69F9E0E0EF" bold="true" box="[197,476,1483,1507]" pageId="0" pageNumber="64">Diagnosis, morphology.</emphasis>
|
||
Large earthcreeper (
|
||
<quantity id="4CA49B71FF914672FD74FA6EFB07E0EF" box="[711,827,1484,1507]" metricMagnitude="-1" metricUnit="m" metricValue="1.95" metricValueMax="2.0" metricValueMin="1.9" pageId="0" pageNumber="64" unit="cm" value="19.5" valueMax="20.0" valueMin="19.0">19–20 cm</quantity>
|
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,
|
||
<quantity id="4CA49B71FF914672FCF4FA6EFB98E0EF" box="[839,932,1484,1507]" metricMagnitude="-2" metricUnit="kg" metricValue="4.8" metricValueMax="5.2" metricValueMin="4.4" pageId="0" pageNumber="64" unit="g" value="48.0" valueMax="52.0" valueMin="44.0">44–52 g</quantity>
|
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,
|
||
<bibRefCitation id="EFCD4B65FF914672FC01FA6EFC6CE0EF" author="Remsen" box="[946,1104,1484,1507]" pageId="0" pageNumber="68" refString="Remsen, J. V., Jr. (2003) Family Furnariidae (Ovenbirds). Pp. 162 - 357 in del Hoyo, J., Elliott, A. & Christie, D. A. (eds.), Handbook of Birds of the World, Vol. 8: Broadbills to Tapaculos. Lynx Edicions, Barcelona." type="book chapter" year="2003">Remsen 2003</bibRefCitation>
|
||
). Bill longish, decurved; face grizzled brown and whitish; whitish superciliary; crown medium-dark brown with pale streaking, especially on forehead; back medium brown with faint pale streaking; wings, tail, and uppertail coverts rufous; throat whitish; underparts dull gray-brown with prominent pale streaking.
|
||
<taxonomicName id="4C5C4D17FF914672FDD0F996FAE7E347" box="[611,731,1588,1611]" class="Aves" family="Furnariidae" genus="Geocerthia" higherTaxonomySource="GBIF" kingdom="Animalia" order="Passeriformes" pageId="0" pageNumber="64" phylum="Chordata" rank="genus">
|
||
<emphasis id="B928EA86FF914672FDD0F996FAE7E347" box="[611,731,1588,1611]" italics="true" pageId="0" pageNumber="64">Geocerthia</emphasis>
|
||
</taxonomicName>
|
||
differs from true
|
||
<taxonomicName id="4C5C4D17FF914672FC25F996FC33E347" box="[918,1039,1588,1611]" class="Aves" family="Furnariidae" genus="Upucerthia" kingdom="Animalia" order="Passeriformes" pageId="0" pageNumber="64" phylum="Chordata" rank="genus">
|
||
<emphasis id="B928EA86FF914672FC25F996FC33E347" box="[918,1039,1588,1611]" italics="true" pageId="0" pageNumber="64">Upucerthia</emphasis>
|
||
</taxonomicName>
|
||
earthcreepers, which have long, thin, highly decurved bills, by its comparatively shorter and stouter decurved bill and its overall darker plumage. Distinguished from all
|
||
<taxonomicName id="4C5C4D17FF914672FE3FF9DBF9CBE39C" box="[396,503,1657,1680]" class="Aves" family="Furnariidae" genus="Cinclodes" kingdom="Animalia" order="Passeriformes" pageId="0" pageNumber="64" phylum="Chordata" rank="genus">
|
||
<emphasis id="B928EA86FF914672FE3FF9DBF9CBE39C" box="[396,503,1657,1680]" italics="true" pageId="0" pageNumber="64">Cinclodes</emphasis>
|
||
</taxonomicName>
|
||
and
|
||
<taxonomicName id="4C5C4D17FF914672FD99F9DBFA9FE39C" box="[554,675,1657,1680]" class="Aves" family="Furnariidae" genus="Upucerthia" kingdom="Animalia" order="Passeriformes" pageId="0" pageNumber="64" phylum="Chordata" rank="genus">
|
||
<emphasis id="B928EA86FF914672FD99F9DBFA9FE39C" box="[554,675,1657,1680]" italics="true" pageId="0" pageNumber="64">Upucerthia</emphasis>
|
||
</taxonomicName>
|
||
species by its rufous wings, uppertail coverts, and tail. Lacks the wingband typical of
|
||
<taxonomicName id="4C5C4D17FF914672FE8EF93EF99BE3BF" box="[317,423,1692,1715]" class="Aves" family="Furnariidae" genus="Cinclodes" kingdom="Animalia" order="Passeriformes" pageId="0" pageNumber="64" phylum="Chordata" rank="genus">
|
||
<emphasis id="B928EA86FF914672FE8EF93EF99BE3BF" box="[317,423,1692,1715]" italics="true" pageId="0" pageNumber="64">Cinclodes</emphasis>
|
||
</taxonomicName>
|
||
species.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="C346651FFF914673FF75F91CFE1CE665" lastPageId="1" lastPageNumber="65" pageId="0" pageNumber="64" type="etymology">
|
||
<paragraph id="8BE33694FF914672FF75F91CFA2AE217" blockId="0.[151,1438,1414,2027]" pageId="0" pageNumber="64">
|
||
<emphasis id="B928EA86FF914672FF75F91CF97BE3DA" bold="true" box="[198,327,1726,1750]" pageId="0" pageNumber="64">Etymology.</emphasis>
|
||
From the Greek
|
||
<emphasis id="B928EA86FF914672FE4FF91DFA1FE3DA" box="[508,547,1727,1750]" italics="true" pageId="0" pageNumber="64">geo</emphasis>
|
||
(earth) and
|
||
<emphasis id="B928EA86FF914672FD10F91DFAD2E3DA" box="[675,750,1727,1750]" italics="true" pageId="0" pageNumber="64">certhia</emphasis>
|
||
(treecreeper), referring to the terrestrial habits of
|
||
<taxonomicName id="4C5C4D17FF914672FB4CF91DFD53E3DA" box="[1279,1391,1727,1750]" class="Aves" family="Furnariidae" genus="Geocerthia" higherTaxonomySource="GBIF" kingdom="Animalia" order="Passeriformes" pageId="0" pageNumber="64" phylum="Chordata" rank="species" species="serrana">
|
||
<emphasis id="B928EA86FF914672FB4CF91DFD53E3DA" box="[1279,1391,1727,1750]" italics="true" pageId="0" pageNumber="64">G. serrana</emphasis>
|
||
</taxonomicName>
|
||
and to its bill, which resembles those of the treecreepers. The construction of the name is a direct parallel to the English name earthcreeper. The name is feminine.
|
||
</paragraph>
|
||
<paragraph id="8BE33694FF914673FF75F884FD5BE435" blockId="0.[151,1438,1414,2027]" lastBlockId="1.[151,1437,152,313]" lastPageId="1" lastPageNumber="65" pageId="0" pageNumber="64">
|
||
<emphasis id="B928EA86FF914672FF75F884F992E232" bold="true" box="[198,430,1830,1854]" pageId="0" pageNumber="64">Molecular analyses.</emphasis>
|
||
A molecular analysis of furnariid species revealed that
|
||
<taxonomicName id="4C5C4D17FF914672FB8DF885FC8AE232" box="[1086,1206,1831,1854]" class="Aves" family="Furnariidae" genus="Geocerthia" higherTaxonomySource="GBIF" kingdom="Animalia" order="Passeriformes" pageId="0" pageNumber="64" phylum="Chordata" rank="genus">
|
||
<emphasis id="B928EA86FF914672FB8DF885FC8AE232" box="[1086,1206,1831,1854]" italics="true" pageId="0" pageNumber="64">Geocerthia</emphasis>
|
||
</taxonomicName>
|
||
is sister to a clade composed of all species of
|
||
<taxonomicName id="4C5C4D17FF914672FE78F8EBFA07E26C" box="[459,571,1865,1888]" class="Aves" family="Furnariidae" genus="Cinclodes" kingdom="Animalia" order="Passeriformes" pageId="0" pageNumber="64" phylum="Chordata" rank="genus">
|
||
<emphasis id="B928EA86FF914672FE78F8EBFA07E26C" box="[459,571,1865,1888]" italics="true" pageId="0" pageNumber="64">Cinclodes</emphasis>
|
||
</taxonomicName>
|
||
and all species of
|
||
<emphasis id="B928EA86FF914672FCA3F8EBFC19E26C" box="[784,1061,1865,1888]" italics="true" pageId="0" pageNumber="64">
|
||
<taxonomicName id="4C5C4D17FF914672FCA3F8EBFBE9E26C" box="[784,981,1865,1888]" class="Aves" family="Furnariidae" genus="Upucerthia" kingdom="Animalia" order="Passeriformes" pageId="0" pageNumber="64" phylum="Chordata" rank="species" species="sensu">
|
||
Upucerthia
|
||
<taxonomicNameLabel id="A21B57FDFF914672FC24F8EBFBE9E26C" box="[919,981,1865,1888]" pageId="0" pageNumber="64" sensu="stricto">sensu</taxonomicNameLabel>
|
||
</taxonomicName>
|
||
stricto
|
||
</emphasis>
|
||
, which in turn are sister taxa. To demonstrate that
|
||
<taxonomicName id="4C5C4D17FF914672FEE0F8CEF9F1E28F" box="[339,461,1900,1923]" class="Aves" family="Furnariidae" genus="Geocerthia" higherTaxonomySource="GBIF" kingdom="Animalia" order="Passeriformes" pageId="0" pageNumber="64" phylum="Chordata" rank="genus">
|
||
<emphasis id="B928EA86FF914672FEE0F8CEF9F1E28F" box="[339,461,1900,1923]" italics="true" pageId="0" pageNumber="64">Geocerthia</emphasis>
|
||
</taxonomicName>
|
||
and
|
||
<taxonomicName id="4C5C4D17FF914672FDB7F8CEFA43E28F" box="[516,639,1900,1923]" class="Aves" family="Furnariidae" genus="Upucerthia" kingdom="Animalia" order="Passeriformes" pageId="0" pageNumber="64" phylum="Chordata" rank="genus">
|
||
<emphasis id="B928EA86FF914672FDB7F8CEFA43E28F" box="[516,639,1900,1923]" italics="true" pageId="0" pageNumber="64">Upucerthia</emphasis>
|
||
</taxonomicName>
|
||
are not sister genera, we present an analysis of a subset of taxa from the larger study. Taxon sampling for this subset (Table 1) included representatives of
|
||
<taxonomicName id="4C5C4D17FF914672FBAFF82DFCA8E2AA" box="[1052,1172,1935,1958]" class="Aves" family="Furnariidae" genus="Geocerthia" higherTaxonomySource="GBIF" kingdom="Animalia" order="Passeriformes" pageId="0" pageNumber="64" phylum="Chordata" rank="species" species="serrana">
|
||
<emphasis id="B928EA86FF914672FBAFF82DFCA8E2AA" box="[1052,1172,1935,1958]" italics="true" pageId="0" pageNumber="64">U. serrana</emphasis>
|
||
</taxonomicName>
|
||
, all other species of the traditional genus
|
||
<taxonomicName id="4C5C4D17FF914672FEE3F813F9F6E2C4" box="[336,458,1969,1992]" class="Aves" family="Furnariidae" genus="Upucerthia" kingdom="Animalia" order="Passeriformes" pageId="0" pageNumber="64" phylum="Chordata" rank="genus">
|
||
<emphasis id="B928EA86FF914672FEE3F813F9F6E2C4" box="[336,458,1969,1992]" italics="true" pageId="0" pageNumber="64">Upucerthia</emphasis>
|
||
</taxonomicName>
|
||
(
|
||
<taxonomicName id="4C5C4D17FF914672FE6AF813FA6EE2C4" box="[473,594,1969,1992]" class="Aves" family="Furnariidae" genus="Upucerthia" kingdom="Animalia" order="Passeriformes" pageId="0" pageNumber="64" phylum="Chordata" rank="genus">
|
||
<emphasis id="B928EA86FF914672FE6AF813FA6EE2C4" box="[473,594,1969,1992]" italics="true" pageId="0" pageNumber="64">Upucerthia</emphasis>
|
||
</taxonomicName>
|
||
,
|
||
<taxonomicName id="4C5C4D17FF914672FDD3F813FACEE2C4" box="[608,754,1969,1992]" class="Aves" family="Furnariidae" genus="Tarphonomus" higherTaxonomySource="GBIF" kingdom="Animalia" order="Passeriformes" pageId="0" pageNumber="64" phylum="Chordata" rank="genus">
|
||
<emphasis id="B928EA86FF914672FDD3F813FACEE2C4" box="[608,754,1969,1992]" italics="true" pageId="0" pageNumber="64">Tarphonomus</emphasis>
|
||
</taxonomicName>
|
||
,
|
||
<taxonomicName id="4C5C4D17FF914672FD4CF813FB91E2C4" box="[767,941,1969,1992]" class="Aves" family="Furnariidae" genus="Ochetorhynchus" higherTaxonomySource="CoL" kingdom="Animalia" order="Passeriformes" pageId="0" pageNumber="64" phylum="Chordata" rank="genus">
|
||
<emphasis id="B928EA86FF914672FD4CF813FB91E2C4" box="[767,941,1969,1992]" italics="true" pageId="0" pageNumber="64">Ochetorhynchus</emphasis>
|
||
</taxonomicName>
|
||
), two species of
|
||
<taxonomicName id="4C5C4D17FF914672FBD0F813FCF2E2C4" box="[1123,1230,1969,1992]" class="Aves" family="Furnariidae" genus="Cinclodes" kingdom="Animalia" order="Passeriformes" pageId="0" pageNumber="64" phylum="Chordata" rank="genus">
|
||
<emphasis id="B928EA86FF914672FBD0F813FCF2E2C4" box="[1123,1230,1969,1992]" italics="true" pageId="0" pageNumber="64">Cinclodes</emphasis>
|
||
</taxonomicName>
|
||
, and single species of the genera
|
||
<taxonomicName id="4C5C4D17FF914672FE9BF876F9A8E2E7" box="[296,404,2004,2027]" class="Aves" family="Furnariidae" genus="Furnarius" kingdom="Animalia" order="Passeriformes" pageId="0" pageNumber="64" phylum="Chordata" rank="genus">
|
||
<emphasis id="B928EA86FF914672FE9BF876F9A8E2E7" box="[296,404,2004,2027]" italics="true" pageId="0" pageNumber="64">Furnarius</emphasis>
|
||
</taxonomicName>
|
||
,
|
||
<taxonomicName id="4C5C4D17FF914672FE11F876FA00E2E7" box="[418,572,2004,2027]" class="Aves" family="Furnariidae" genus="Leptasthenura" kingdom="Animalia" order="Passeriformes" pageId="0" pageNumber="64" phylum="Chordata" rank="genus">
|
||
<emphasis id="B928EA86FF914672FE11F876FA00E2E7" box="[418,572,2004,2027]" italics="true" pageId="0" pageNumber="64">Leptasthenura</emphasis>
|
||
</taxonomicName>
|
||
,
|
||
<taxonomicName id="4C5C4D17FF914672FDFAF876FA8BE2E7" box="[585,695,2004,2027]" class="Aves" family="Furnariidae" genus="Synallaxis" kingdom="Animalia" order="Passeriformes" pageId="0" pageNumber="64" phylum="Chordata" rank="genus">
|
||
<emphasis id="B928EA86FF914672FDFAF876FA8BE2E7" box="[585,695,2004,2027]" italics="true" pageId="0" pageNumber="64">Synallaxis</emphasis>
|
||
</taxonomicName>
|
||
,
|
||
<taxonomicName id="4C5C4D17FF914672FD77F876FB0FE2E7" box="[708,819,2004,2027]" class="Aves" family="Furnariidae" genus="Certhiaxis" kingdom="Animalia" order="Passeriformes" pageId="0" pageNumber="64" phylum="Chordata" rank="genus">
|
||
<emphasis id="B928EA86FF914672FD77F876FB0FE2E7" box="[708,819,2004,2027]" italics="true" pageId="0" pageNumber="64">Certhiaxis</emphasis>
|
||
</taxonomicName>
|
||
,
|
||
<taxonomicName id="4C5C4D17FF914672FCF3F876FBDBE2E7" box="[832,999,2004,2027]" class="Aves" family="Furnariidae" genus="Pseudocolaptes" kingdom="Animalia" order="Passeriformes" pageId="0" pageNumber="64" phylum="Chordata" rank="genus">
|
||
<emphasis id="B928EA86FF914672FCF3F876FBDBE2E7" box="[832,999,2004,2027]" italics="true" pageId="0" pageNumber="64">Pseudocolaptes</emphasis>
|
||
</taxonomicName>
|
||
,
|
||
<taxonomicName id="4C5C4D17FF914672FC47F876FC6CE2E7" box="[1012,1104,2004,2027]" class="Aves" family="Furnariidae" genus="Philydor" kingdom="Animalia" order="Passeriformes" pageId="0" pageNumber="64" phylum="Chordata" rank="genus">
|
||
<emphasis id="B928EA86FF914672FC47F876FC6CE2E7" box="[1012,1104,2004,2027]" italics="true" pageId="0" pageNumber="64">Philydor</emphasis>
|
||
</taxonomicName>
|
||
,
|
||
<taxonomicName id="4C5C4D17FF914672FBEDF876FCD5E2E7" box="[1118,1257,2004,2027]" class="Aves" family="Furnariidae" genus="Thripadectes" kingdom="Animalia" order="Passeriformes" pageId="0" pageNumber="64" phylum="Chordata" rank="genus">
|
||
<emphasis id="B928EA86FF914672FBEDF876FCD5E2E7" box="[1118,1257,2004,2027]" italics="true" pageId="0" pageNumber="64">Thripadectes</emphasis>
|
||
</taxonomicName>
|
||
,
|
||
<taxonomicName id="4C5C4D17FF914672FB45F876FD54E2E7" box="[1270,1384,2004,2027]" class="Aves" family="Furnariidae" genus="Automolus" kingdom="Animalia" order="Passeriformes" pageId="0" pageNumber="64" phylum="Chordata" rank="genus">
|
||
<emphasis id="B928EA86FF914672FB45F876FD54E2E7" box="[1270,1384,2004,2027]" italics="true" pageId="0" pageNumber="64">Automolus</emphasis>
|
||
</taxonomicName>
|
||
, and
|
||
<taxonomicName id="4C5C4D17FF904673FF24FF3AF8C3E5A3" box="[151,255,152,175]" class="Aves" family="Furnariidae" genus="Lochmias" kingdom="Animalia" order="Passeriformes" pageId="1" pageNumber="65" phylum="Chordata" rank="genus">
|
||
<emphasis id="B928EA86FF904673FF24FF3AF8C3E5A3" box="[151,255,152,175]" italics="true" pageId="1" pageNumber="65">Lochmias</emphasis>
|
||
</taxonomicName>
|
||
. We used as outgroups the dendrocolaptines
|
||
<taxonomicName id="4C5C4D17FF904673FD68FF3AFBE1E5A3" box="[731,989,152,175]" class="Aves" family="Furnariidae" genus="Dendrocincla" kingdom="Animalia" order="Passeriformes" pageId="1" pageNumber="65" phylum="Chordata" rank="species" species="fuliginosa">
|
||
<emphasis id="B928EA86FF904673FD68FF3AFBE1E5A3" box="[731,989,152,175]" italics="true" pageId="1" pageNumber="65">Dendrocincla fuliginosa</emphasis>
|
||
</taxonomicName>
|
||
,
|
||
<taxonomicName id="4C5C4D17FF904673FC5AFF3AFCFEE5A3" box="[1001,1218,152,175]" class="Aves" family="Furnariidae" genus="Drymornis" kingdom="Animalia" order="Passeriformes" pageId="1" pageNumber="65" phylum="Chordata" rank="species" species="bridgesii">
|
||
<emphasis id="B928EA86FF904673FC5AFF3AFCFEE5A3" box="[1001,1218,152,175]" italics="true" pageId="1" pageNumber="65">Drymornis bridgesii</emphasis>
|
||
</taxonomicName>
|
||
, and
|
||
<emphasis id="B928EA86FF904673FB48FF3AF8D4E5DD" italics="true" pageId="1" pageNumber="65">
|
||
<taxonomicName id="4C5C4D17FF904673FB48FF3AF8D8E5DD" class="Aves" family="Furnariidae" genus="Xiphorhynchus" kingdom="Animalia" order="Passeriformes" pageId="1" pageNumber="65" phylum="Chordata" rank="species" species="fuscus">Xiphorhynchus fuscus</taxonomicName>
|
||
,
|
||
</emphasis>
|
||
as well as the basal furnariid
|
||
<taxonomicName id="4C5C4D17FF904673FDFEFF18FB11E5DD" box="[589,813,186,209]" class="Aves" family="Furnariidae" genus="Geositta" kingdom="Animalia" order="Passeriformes" pageId="1" pageNumber="65" phylum="Chordata" rank="species" species="isabellina">
|
||
<emphasis id="B928EA86FF904673FDFEFF18FB11E5DD" box="[589,813,186,209]" italics="true" pageId="1" pageNumber="65">Geositta isabellina</emphasis>
|
||
</taxonomicName>
|
||
.
|
||
<collectingCountry id="F34B7604FF904673FC8EFF18FB61E5DD" box="[829,861,186,209]" name="American Samoa" pageId="1" pageNumber="65">As</collectingCountry>
|
||
a simple test of its monophyly and phylogenetic relationships, a second individual of
|
||
<taxonomicName id="4C5C4D17FF904673FD87FF7FFB32E5F8" box="[564,782,221,244]" class="Aves" family="Furnariidae" genus="Geocerthia" higherTaxonomySource="GBIF" kingdom="Animalia" order="Passeriformes" pageId="1" pageNumber="65" phylum="Chordata" rank="species" species="serrana">
|
||
<emphasis id="B928EA86FF904673FD87FF7FFB32E5F8" box="[564,782,221,244]" italics="true" pageId="1" pageNumber="65">Geocerthia serrana</emphasis>
|
||
</taxonomicName>
|
||
(ZMUC [Zoological Museum, University of Copenhagen] S444; GenBank Accession #s:
|
||
<accessionNumber id="940FAB77FF904673FE50FEA2FA69E41B" box="[483,597,256,279]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/EF635339" pageId="1" pageNumber="65">EF635339</accessionNumber>
|
||
,
|
||
<accessionNumber id="940FAB77FF904673FDD3FEA2FAEEE41B" box="[608,722,256,279]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/EF635358" pageId="1" pageNumber="65">EF635358</accessionNumber>
|
||
,
|
||
<accessionNumber id="940FAB77FF904673FD6EFEA2FB71E41B" box="[733,845,256,279]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/EF635319" pageId="1" pageNumber="65">EF635319</accessionNumber>
|
||
) was sequenced. This individual differed from the first by only one nucleotide substitution and grouped with it in all analyses in which it was included (results not shown).
|
||
</paragraph>
|
||
<paragraph id="8BE33694FF904673FFC4FD71FA83E7E0" blockId="1.[119,703,723,748]" box="[119,703,723,748]" pageId="1" pageNumber="65">Table 1. Tissues used in the phylogenetic analysis.</paragraph>
|
||
<paragraph id="8BE33694FF904673FFC4FC82FB08E635" blockId="1.[119,1568,800,873]" box="[119,820,800,825]" pageId="1" pageNumber="65">Taxon Museum Tissue ID Locality</paragraph>
|
||
<paragraph id="8BE33694FF904673FFC4FCF2FE1CE665" blockId="1.[119,1568,800,873]" box="[119,1568,848,873]" pageId="1" pageNumber="65">
|
||
<taxonomicName id="4C5C4D17FF904673FFC4FCF2F96EE665" box="[119,338,848,873]" class="Aves" family="Furnariidae" genus="Geositta" kingdom="Animalia" order="Passeriformes" pageId="1" pageNumber="65" phylum="Chordata" rank="species" species="isabellina">
|
||
<emphasis id="B928EA86FF904673FFC4FCF2F96EE665" box="[119,338,848,873]" italics="true" pageId="1" pageNumber="65">Geositta isabellina</emphasis>
|
||
</taxonomicName>
|
||
AMNH 12181
|
||
<collectingCountry id="F34B7604FF904673FD67FCF2FB11E665" box="[724,813,848,873]" name="Chile" pageId="1" pageNumber="65">CHILE</collectingCountry>
|
||
: Region Metropolitana,
|
||
<quantity id="4CA49B71FF904673FBF0FCF2FCB0E665" box="[1091,1164,848,873]" metricMagnitude="4" metricUnit="m" metricValue="1.5" pageId="1" pageNumber="65" unit="km" value="15.0">15 km</quantity>
|
||
ENE Embalse El Yeso, ca.
|
||
<quantity id="4CA49B71FF904673FA7CFCF2FE1CE665" box="[1487,1568,848,873]" metricMagnitude="3" metricUnit="m" metricValue="3.4" pageId="1" pageNumber="65" unit="m" value="3400.0">3400m</quantity>
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="C346651FFF904671FFC4FC00FC2AE2A9" lastPageId="3" lastPageNumber="67" pageId="1" pageNumber="65" type="description">
|
||
<paragraph id="8BE33694FF904673FFC4FC00FD01E6B7" blockId="1.[119,1657,930,1239]" box="[119,1341,930,955]" pageId="1" pageNumber="65">
|
||
<taxonomicName id="4C5C4D17FF904673FFC4FC00F94BE6B7" box="[119,375,930,955]" class="Aves" family="Furnariidae" genus="Upucerthia" kingdom="Animalia" order="Passeriformes" pageId="1" pageNumber="65" phylum="Chordata" rank="species" species="dumetaria">
|
||
<emphasis id="B928EA86FF904673FFC4FC00F94BE6B7" box="[119,375,930,955]" italics="true" pageId="1" pageNumber="65">Upucerthia dumetaria</emphasis>
|
||
</taxonomicName>
|
||
AMNH 10396
|
||
<collectingCountry id="F34B7604FF904673FD67FC00FBBCE6B7" box="[724,896,930,955]" name="Argentina" pageId="1" pageNumber="65">ARGENTINA</collectingCountry>
|
||
: Prov. Neuquén, Sierra Auca Mahuida
|
||
</paragraph>
|
||
<paragraph id="8BE33694FF904673FF3CFC76FD7DE6E1" blockId="1.[119,1657,930,1239]" box="[143,1345,980,1005]" pageId="1" pageNumber="65">
|
||
.
|
||
<emphasis id="B928EA86FF904673FF29FC76F8C6E6E1" box="[154,250,980,1005]" italics="true" pageId="1" pageNumber="65">albigula</emphasis>
|
||
LSUMNS B61491
|
||
<collectingCountry id="F34B7604FF904673FD67FC76FB1EE6E1" box="[724,802,980,1005]" name="Peru" pageId="1" pageNumber="65">PERU</collectingCountry>
|
||
: Depto. Arequipa,
|
||
<quantity id="4CA49B71FF904673FC48FC76FC78E6E1" box="[1019,1092,980,1005]" metricMagnitude="4" metricUnit="m" metricValue="1.4" pageId="1" pageNumber="65" unit="km" value="14.0">14 km</quantity>
|
||
E Pancarpata,
|
||
<quantity id="4CA49B71FF904673FB42FC76FD7DE6E1" box="[1265,1345,980,1005]" metricMagnitude="3" metricUnit="m" metricValue="3.222" pageId="1" pageNumber="65" unit="m" value="3222.0">3222m</quantity>
|
||
</paragraph>
|
||
<paragraph id="8BE33694FF904673FF3CFBA5FE45E1BA" blockId="1.[119,1657,930,1239]" pageId="1" pageNumber="65">
|
||
.
|
||
<emphasis id="B928EA86FF904673FF29FBA5F8E3E12C" box="[154,223,1031,1056]" italics="true" pageId="1" pageNumber="65">jelskii</emphasis>
|
||
LSUMNS B103886
|
||
<collectingCountry id="F34B7604FF904673FD67FBA5FB1EE12C" box="[724,802,1031,1056]" name="Peru" pageId="1" pageNumber="65">PERU</collectingCountry>
|
||
: Depto. Tacna, Tacna-Ilave Road, ca
|
||
<quantity id="4CA49B71FF904673FB60FBA5FD20E12C" box="[1235,1308,1031,1056]" metricMagnitude="4" metricUnit="m" metricValue="2.5" pageId="1" pageNumber="65" unit="km" value="25.0">25 km</quantity>
|
||
NE Tarata,
|
||
<quantity id="4CA49B71FF904673FA1BFBA5FDC4E12C" box="[1448,1528,1031,1056]" metricMagnitude="3" metricUnit="m" metricValue="4.05" pageId="1" pageNumber="65" unit="m" value="4050.0">4050m</quantity>
|
||
.
|
||
<emphasis id="B928EA86FF904673FF29FB9BF91BE15E" box="[154,295,1081,1106]" italics="true" pageId="1" pageNumber="65">validirostris</emphasis>
|
||
LSUMNS B17160
|
||
<collectingCountry id="F34B7604FF904673FD67FB9BFBBCE15E" box="[724,896,1081,1106]" name="Argentina" pageId="1" pageNumber="65">ARGENTINA</collectingCountry>
|
||
: Prov. Tucumán,
|
||
<quantity id="4CA49B71FF904673FBF8FB9BFCA8E15E" box="[1099,1172,1081,1106]" metricMagnitude="4" metricUnit="m" metricValue="1.2" pageId="1" pageNumber="65" unit="km" value="12.0">12 km</quantity>
|
||
N,
|
||
<quantity id="4CA49B71FF904673FB05FB9BFCCDE15E" box="[1206,1265,1081,1106]" metricMagnitude="3" metricUnit="m" metricValue="4.0" pageId="1" pageNumber="65" unit="km" value="4.0">4 km</quantity>
|
||
W Tafi de Valle,
|
||
<quantity id="4CA49B71FF904673FA72FB9BFE24E15E" box="[1473,1560,1081,1106]" metricMagnitude="3" metricUnit="m" metricValue="3.06" pageId="1" pageNumber="65" unit="m" value="3060.0">3060 m</quantity>
|
||
.
|
||
<taxonomicName id="4C5C4D17FF904673FF29FBC9F8C8E188" box="[154,244,1131,1156]" class="Aves" family="Furnariidae" genus="Geocerthia" higherTaxonomySource="GBIF" kingdom="Animalia" order="Passeriformes" pageId="1" pageNumber="65" phylum="Chordata" rank="species" species="serrana">
|
||
<emphasis id="B928EA86FF904673FF29FBC9F8C8E188" box="[154,244,1131,1156]" italics="true" pageId="1" pageNumber="65">serrana</emphasis>
|
||
</taxonomicName>
|
||
LSUMNS B49662
|
||
<collectingCountry id="F34B7604FF904673FD67FBC9FB1EE188" box="[724,802,1131,1156]" name="Peru" pageId="1" pageNumber="65">PERU</collectingCountry>
|
||
: Depto. Lima, Santa Eulalia road, ca
|
||
<quantity id="4CA49B71FF904673FB7CFBC9FD24E188" box="[1231,1304,1131,1156]" metricMagnitude="4" metricUnit="m" metricValue="8.6" pageId="1" pageNumber="65" unit="km" value="86.0">86 km</quantity>
|
||
NE Lima
|
||
<taxonomicName id="4C5C4D17FF904673FFC4FB3FF9A2E1BA" box="[119,414,1181,1206]" class="Aves" family="Furnariidae" genus="Tarphonomus" higherTaxonomySource="GBIF" kingdom="Animalia" order="Passeriformes" pageId="1" pageNumber="65" phylum="Chordata" rank="species" species="certhioides">
|
||
<emphasis id="B928EA86FF904673FFC4FB3FF9A2E1BA" box="[119,414,1181,1206]" italics="true" pageId="1" pageNumber="65">Tarphonomus certhioides</emphasis>
|
||
</taxonomicName>
|
||
LSUMNS B18872
|
||
<collectingCountry id="F34B7604FF904673FD67FB3FFB73E1BA" box="[724,847,1181,1206]" name="Bolivia" pageId="1" pageNumber="65">BOLIVIA</collectingCountry>
|
||
: Depto. Santa Cruz, Estancia Perforación, ca
|
||
<quantity id="4CA49B71FF904673FAE9FB3FFD8DE1BA" box="[1370,1457,1181,1206]" metricMagnitude="5" metricUnit="m" metricValue="1.3" pageId="1" pageNumber="65" unit="km" value="130.0">130 km</quantity>
|
||
E Charagua, 520
|
||
</paragraph>
|
||
<paragraph id="8BE33694FF904673FD67FB1CFAD6E1DB" blockId="1.[119,1657,930,1239]" box="[724,746,1214,1239]" pageId="1" pageNumber="65">m</paragraph>
|
||
<paragraph id="8BE33694FF904673FF25FB59FE7FE04A" blockId="1.[119,1603,1275,1383]" pageId="1" pageNumber="65">
|
||
<taxonomicName id="4C5C4D17FF904673FF25FB59F8D2E018" box="[150,238,1275,1300]" class="Aves" family="Furnariidae" genus="Upucerthia" kingdom="Animalia" order="Passeriformes" pageId="1" pageNumber="65" phylum="Chordata" rank="species" species="harterti">
|
||
<emphasis id="B928EA86FF904673FF25FB59F8D2E018" box="[150,238,1275,1300]" italics="true" pageId="1" pageNumber="65">harterti</emphasis>
|
||
</taxonomicName>
|
||
LSUMNS B34573
|
||
<collectingCountry id="F34B7604FF904673FD67FB59FB73E018" box="[724,847,1275,1300]" name="Bolivia" pageId="1" pageNumber="65">BOLIVIA</collectingCountry>
|
||
: Depto. Santa Cruz, Tambo,
|
||
<quantity id="4CA49B71FF904673FB2FFB59FCD9E018" box="[1180,1253,1275,1300]" metricMagnitude="4" metricUnit="m" metricValue="1.4" pageId="1" pageNumber="65" unit="km" value="14.0">14 km</quantity>
|
||
SE Camarapa
|
||
<taxonomicName id="4C5C4D17FF904673FFC4FA8FF98FE04A" box="[119,435,1325,1350]" class="Aves" family="Furnariidae" genus="Ochetorhynchus" higherTaxonomySource="CoL" kingdom="Animalia" order="Passeriformes" pageId="1" pageNumber="65" phylum="Chordata" rank="species" species="andaecola">
|
||
<emphasis id="B928EA86FF904673FFC4FA8FF98FE04A" box="[119,435,1325,1350]" italics="true" pageId="1" pageNumber="65">Ochetorhynchus andaecola</emphasis>
|
||
</taxonomicName>
|
||
LSUMNS B1199
|
||
<collectingCountry id="F34B7604FF904673FD67FA8FFB73E04A" box="[724,847,1325,1350]" name="Bolivia" pageId="1" pageNumber="65">BOLIVIA</collectingCountry>
|
||
: Depto. La Paz;,
|
||
<quantity id="4CA49B71FF904673FBA7FA8FFC58E04A" box="[1044,1124,1325,1350]" metricMagnitude="3" metricUnit="m" metricValue="2.5" pageId="1" pageNumber="65" unit="km" value="2.5">2.5 km</quantity>
|
||
by road S Mecapaca, ca
|
||
<quantity id="4CA49B71FF904673FA37FA8FFDF1E04A" box="[1412,1485,1325,1350]" metricMagnitude="4" metricUnit="m" metricValue="2.6" pageId="1" pageNumber="65" unit="km" value="26.0">26 km</quantity>
|
||
by road S
|
||
</paragraph>
|
||
<paragraph id="8BE33694FF904673FD67FAECFBA5E06B" blockId="1.[119,1603,1275,1383]" box="[724,921,1358,1383]" pageId="1" pageNumber="65">
|
||
Calacoto,
|
||
<quantity id="4CA49B71FF904673FCFAFAECFBA5E06B" box="[841,921,1358,1383]" metricMagnitude="3" metricUnit="m" metricValue="3.05" pageId="1" pageNumber="65" unit="m" value="3050.0">3050m</quantity>
|
||
</paragraph>
|
||
<paragraph id="8BE33694FF904673FF3CFA2AFE40E0AD" blockId="1.[119,1660,1416,1659]" box="[143,1660,1416,1441]" pageId="1" pageNumber="65">
|
||
.
|
||
<taxonomicName id="4C5C4D17FF904673FF29FA2AF929E0AD" box="[154,277,1416,1441]" class="Aves" family="Furnariidae" genus="Upucerthia" kingdom="Animalia" order="Passeriformes" pageId="1" pageNumber="65" phylum="Chordata" rank="species" species="ruficaudus">
|
||
<emphasis id="B928EA86FF904673FF29FA2AF929E0AD" box="[154,277,1416,1441]" italics="true" pageId="1" pageNumber="65">ruficaudus</emphasis>
|
||
</taxonomicName>
|
||
LSUMNS B103908
|
||
<collectingCountry id="F34B7604FF904673FD67FA2AFB1EE0AD" box="[724,802,1416,1441]" name="Peru" pageId="1" pageNumber="65">PERU</collectingCountry>
|
||
: Depto. Arequipa, km 60 on Div. Arequipa-Juliaca road, ca 10 road km W
|
||
</paragraph>
|
||
<paragraph id="8BE33694FF904673FD67FA0BFB7CE0CE" blockId="1.[119,1660,1416,1659]" box="[724,832,1449,1474]" pageId="1" pageNumber="65">Chaguata</paragraph>
|
||
<paragraph id="8BE33694FF904673FF3CFA7DFE54E326" blockId="1.[119,1660,1416,1659]" pageId="1" pageNumber="65">
|
||
.
|
||
<taxonomicName id="4C5C4D17FF904673FF29FA7DF914E0F4" box="[154,296,1503,1528]" class="Aves" family="Furnariidae" genus="Eremobius" kingdom="Animalia" order="Passeriformes" pageId="1" pageNumber="65" phylum="Chordata" rank="species" species="phoenicurus">
|
||
<emphasis id="B928EA86FF904673FF29FA7DF914E0F4" box="[154,296,1503,1528]" italics="true" pageId="1" pageNumber="65">phoenicurus</emphasis>
|
||
</taxonomicName>
|
||
AMNH 9943
|
||
<collectingCountry id="F34B7604FF904673FD67FA7DFBBCE0F4" box="[724,896,1503,1528]" name="Argentina" pageId="1" pageNumber="65">ARGENTINA</collectingCountry>
|
||
: Prov. Río Negro,
|
||
<quantity id="4CA49B71FF904673FBE4FA7DFC9CE0F4" box="[1111,1184,1503,1528]" metricMagnitude="4" metricUnit="m" metricValue="2.0" pageId="1" pageNumber="65" unit="km" value="20.0">20 km</quantity>
|
||
E Ñorquinco,
|
||
<quantity id="4CA49B71FF904673FAFAFA7DFD9CE0F4" box="[1353,1440,1503,1528]" metricMagnitude="3" metricUnit="m" metricValue="1.0" pageId="1" pageNumber="65" unit="m" value="1000.0">1000 m</quantity>
|
||
.
|
||
<taxonomicName id="4C5C4D17FF904673FF29F9B3F934E326" box="[154,264,1553,1578]" class="Aves" family="Furnariidae" genus="Chilia" kingdom="Animalia" order="Passeriformes" pageId="1" pageNumber="65" phylum="Chordata" rank="species" species="melanura">
|
||
<emphasis id="B928EA86FF904673FF29F9B3F934E326" box="[154,264,1553,1578]" italics="true" pageId="1" pageNumber="65">melanura</emphasis>
|
||
</taxonomicName>
|
||
AMNH 12148
|
||
<collectingCountry id="F34B7604FF904673FD67F9B3FB11E326" box="[724,813,1553,1578]" name="Chile" pageId="1" pageNumber="65">CHILE</collectingCountry>
|
||
: Region Metropolitana, ca
|
||
<quantity id="4CA49B71FF904673FBD7F9B3FCA3E326" box="[1124,1183,1553,1578]" metricMagnitude="3" metricUnit="m" metricValue="4.0" pageId="1" pageNumber="65" unit="km" value="4.0">4 km</quantity>
|
||
SSW by road from peak of Cerro de El
|
||
</paragraph>
|
||
<paragraph id="8BE33694FF904673FD67F990FBA3E347" blockId="1.[119,1660,1416,1659]" box="[724,927,1586,1611]" pageId="1" pageNumber="65">
|
||
Roble, ca
|
||
<quantity id="4CA49B71FF904673FCFBF990FBA3E347" box="[840,927,1586,1611]" metricMagnitude="3" metricUnit="m" metricValue="1.6" pageId="1" pageNumber="65" unit="m" value="1600.0">1600 m</quantity>
|
||
</paragraph>
|
||
<paragraph id="8BE33694FF904670FFC4F9C0FBB4E789" blockId="1.[119,1660,1416,1659]" lastBlockId="2.[124,1823,617,1291]" lastPageId="2" lastPageNumber="66" pageId="1" pageNumber="65">
|
||
<taxonomicName id="4C5C4D17FF904673FFC4F9C0F905E377" box="[119,313,1634,1659]" class="Aves" family="Furnariidae" genus="Cinclodes" kingdom="Animalia" order="Passeriformes" pageId="1" pageNumber="65" phylum="Chordata" rank="species" species="fuscus">
|
||
<emphasis id="B928EA86FF904673FFC4F9C0F905E377" box="[119,313,1634,1659]" italics="true" pageId="1" pageNumber="65">Cinclodes fuscus</emphasis>
|
||
</taxonomicName>
|
||
AMNH 12169
|
||
<collectingCountry id="F34B7604FF904673FD67F9C0FB11E377" box="[724,813,1634,1659]" name="Chile" pageId="1" pageNumber="65">CHILE</collectingCountry>
|
||
: Region Metropolitana,
|
||
<quantity id="4CA49B71FF904673FBF7F9C0FC42E377" box="[1092,1150,1634,1659]" metricMagnitude="3" metricUnit="m" metricValue="2.0" pageId="1" pageNumber="65" unit="km" value="2.0">2 km</quantity>
|
||
ENE Embalse El Yeso, ca.
|
||
<quantity id="4CA49B71FF904673FA72F9C0FE24E377" box="[1473,1560,1634,1659]" metricMagnitude="3" metricUnit="m" metricValue="2.5" pageId="1" pageNumber="65" unit="m" value="2500.0">2500 m</quantity>
|
||
Taxon Museum Tissue ID Locality
|
||
</paragraph>
|
||
<paragraph id="8BE33694FF934670FF26FD3FFDD3E7FC" blockId="2.[124,1823,617,1291]" pageId="2" pageNumber="66">
|
||
.
|
||
<emphasis id="B928EA86FF934670FF11FD3FF96CE7B5" box="[162,336,669,697]" italics="true" pageId="2" pageNumber="66">nigrofumosus</emphasis>
|
||
AMNH 12164
|
||
<collectingCountry id="F34B7604FF934670FCAFFD3FFB43E7B5" box="[796,895,669,697]" name="Chile" pageId="2" pageNumber="66">CHILE</collectingCountry>
|
||
: Region Valparaíso, Roca Brava, ca.
|
||
<quantity id="4CA49B71FF934670FAEEFD3FFDA2E7B5" box="[1373,1438,669,697]" metricMagnitude="3" metricUnit="m" metricValue="2.0" pageId="2" pageNumber="66" unit="km" value="2.0">2 km</quantity>
|
||
N Zapallar
|
||
<taxonomicName id="4C5C4D17FF934670FFCFFD76F961E7FC" box="[124,349,724,752]" class="Aves" family="Furnariidae" genus="Furnarius" kingdom="Animalia" order="Passeriformes" pageId="2" pageNumber="66" phylum="Chordata" rank="species" species="figulus">
|
||
<emphasis id="B928EA86FF934670FFCFFD76F961E7FC" box="[124,349,724,752]" italics="true" pageId="2" pageNumber="66">Furnarius figulus</emphasis>
|
||
</taxonomicName>
|
||
FMNH 392828
|
||
<collectingCountry id="F34B7604FF934670FCAFFD76FBA8E7FC" box="[796,916,724,752]" name="Brazil" pageId="2" pageNumber="66">BRAZIL</collectingCountry>
|
||
: Estado Alagoas, Piranhas, Fazenda Bela Vista
|
||
</paragraph>
|
||
<paragraph id="8BE33694FF934670FF23FCAEFD78E624" blockId="2.[124,1823,617,1291]" box="[144,1348,780,808]" pageId="2" pageNumber="66">
|
||
.
|
||
<emphasis id="B928EA86FF934670FF13FCAEF8DEE624" box="[160,226,780,808]" italics="true" pageId="2" pageNumber="66">rufus</emphasis>
|
||
AMNH 10431
|
||
<collectingCountry id="F34B7604FF934670FCAFFCAEFBE0E624" box="[796,988,780,808]" name="Argentina" pageId="2" pageNumber="66">ARGENTINA</collectingCountry>
|
||
: Prov. Neuquén, Centenario
|
||
</paragraph>
|
||
<paragraph id="8BE33694FF934670FFCFFCE6FDF6E66C" blockId="2.[124,1823,617,1291]" box="[124,1482,836,864]" pageId="2" pageNumber="66">
|
||
<taxonomicName id="4C5C4D17FF934670FFCFFCE6F9D5E66C" box="[124,489,836,864]" class="Aves" family="Furnariidae" genus="Leptasthenura" kingdom="Animalia" order="Passeriformes" pageId="2" pageNumber="66" phylum="Chordata" rank="species" species="aegithaloides">
|
||
<emphasis id="B928EA86FF934670FFCFFCE6F9D5E66C" box="[124,489,836,864]" italics="true" pageId="2" pageNumber="66">Leptasthenura aegithaloides</emphasis>
|
||
</taxonomicName>
|
||
AMNH 10306
|
||
<collectingCountry id="F34B7604FF934670FCAFFCE6FBE7E66C" box="[796,987,836,864]" name="Argentina" pageId="2" pageNumber="66">ARGENTINA</collectingCountry>
|
||
: Prov. Neuquén, Sierra Auca Mahuida
|
||
</paragraph>
|
||
<paragraph id="8BE33694FF934670FFCFFCDEFD40E133" blockId="2.[124,1823,617,1291]" pageId="2" pageNumber="66">
|
||
<taxonomicName id="4C5C4D17FF934670FFCFFCDEF9B8E694" box="[124,388,892,920]" class="Aves" family="Furnariidae" genus="Synallaxis" kingdom="Animalia" order="Passeriformes" pageId="2" pageNumber="66" phylum="Chordata" rank="species" species="albescens">
|
||
<emphasis id="B928EA86FF934670FFCFFCDEF9B8E694" box="[124,388,892,920]" italics="true" pageId="2" pageNumber="66">Synallaxis albescens</emphasis>
|
||
</taxonomicName>
|
||
AMNH 2295
|
||
<collectingCountry id="F34B7604FF934670FCAEFCDEFB99E694" box="[797,933,892,920]" name="Bolivia" pageId="2" pageNumber="66">BOLIVIA</collectingCountry>
|
||
: Depto. Santa Cruz,
|
||
<quantity id="4CA49B71FF934670FB1FFCDEFCC1E694" box="[1196,1277,892,920]" metricMagnitude="2" metricUnit="m" metricValue="3.0" pageId="2" pageNumber="66" unit="m" value="300.0">300 m</quantity>
|
||
N of Rio Mercedes,
|
||
<quantity id="4CA49B71FF934670F9BAFCDEFE66E694" box="[1545,1626,892,920]" metricMagnitude="2" metricUnit="m" metricValue="6.0" pageId="2" pageNumber="66" unit="m" value="600.0">600 m</quantity>
|
||
<taxonomicName id="4C5C4D17FF934670FFCFFC11F986E6C3" box="[124,442,947,975]" class="Aves" family="Furnariidae" genus="Certhiaxis" kingdom="Animalia" order="Passeriformes" pageId="2" pageNumber="66" phylum="Chordata" rank="species" species="cinnamomeus">
|
||
<emphasis id="B928EA86FF934670FFCFFC11F986E6C3" box="[124,442,947,975]" italics="true" pageId="2" pageNumber="66">Certhiaxis cinnamomeus</emphasis>
|
||
</taxonomicName>
|
||
AMNH 6190
|
||
<collectingCountry id="F34B7604FF934670FCAEFC11FB99E6C3" box="[797,933,947,975]" name="Bolivia" pageId="2" pageNumber="66">BOLIVIA</collectingCountry>
|
||
: Depto. Santa Cruz,
|
||
<quantity id="4CA49B71FF934670FB1FFC11FCC1E6C3" box="[1196,1277,947,975]" metricMagnitude="2" metricUnit="m" metricValue="3.0" pageId="2" pageNumber="66" unit="m" value="300.0">300 m</quantity>
|
||
N of Rio Mercedes,
|
||
<quantity id="4CA49B71FF934670F9BAFC11FE66E6C3" box="[1545,1626,947,975]" metricMagnitude="2" metricUnit="m" metricValue="6.0" pageId="2" pageNumber="66" unit="m" value="600.0">600 m</quantity>
|
||
<taxonomicName id="4C5C4D17FF934670FFCFFC49F9FAE10B" box="[124,454,1003,1031]" class="Aves" family="Furnariidae" genus="Pseudocolaptes" kingdom="Animalia" order="Passeriformes" pageId="2" pageNumber="66" phylum="Chordata" rank="species" species="lawrencii">
|
||
<emphasis id="B928EA86FF934670FFCFFC49F9FAE10B" box="[124,454,1003,1031]" italics="true" pageId="2" pageNumber="66">Pseudocolaptes lawrencii</emphasis>
|
||
</taxonomicName>
|
||
AMNH 3694
|
||
<collectingCountry id="F34B7604FF934670FCAEFC49FBE2E10B" box="[797,990,1003,1031]" name="Costa Rica" pageId="2" pageNumber="66">COSTA RICA</collectingCountry>
|
||
: Prov. Herodia,
|
||
<quantity id="4CA49B71FF934670FB1DFC49FCD3E10B" box="[1198,1263,1003,1031]" metricMagnitude="3" metricUnit="m" metricValue="3.0" pageId="2" pageNumber="66" unit="km" value="3.0">3 km</quantity>
|
||
N Porrosati,
|
||
<quantity id="4CA49B71FF934670FA29FC49FDC7E10B" box="[1434,1531,1003,1031]" metricMagnitude="3" metricUnit="m" metricValue="2.2" pageId="2" pageNumber="66" unit="m" value="2200.0">2200 m</quantity>
|
||
<taxonomicName id="4C5C4D17FF934670FFCFFB81F94AE133" box="[124,374,1059,1087]" class="Aves" family="Furnariidae" genus="Philydor" kingdom="Animalia" order="Passeriformes" pageId="2" pageNumber="66" phylum="Chordata" rank="species" species="pyrrhodes">
|
||
<emphasis id="B928EA86FF934670FFCFFB81F94AE133" box="[124,374,1059,1087]" italics="true" pageId="2" pageNumber="66">Philydor pyrrhodes</emphasis>
|
||
</taxonomicName>
|
||
AMNH 8864
|
||
<collectingCountry id="F34B7604FF934670FCAFFB81FBE3E133" box="[796,991,1059,1087]" name="Venezuela" pageId="2" pageNumber="66">VENEZUELA</collectingCountry>
|
||
: Estado Amazonas, Mrakapiwie
|
||
</paragraph>
|
||
<paragraph id="8BE33694FF934670FFCFFBF9FED2E1EA" blockId="2.[124,1823,617,1291]" pageId="2" pageNumber="66">
|
||
<taxonomicName id="4C5C4D17FF934670FFCFFBF9F9E4E17B" box="[124,472,1115,1143]" class="Aves" family="Furnariidae" genus="Thripadectes" kingdom="Animalia" order="Passeriformes" pageId="2" pageNumber="66" phylum="Chordata" rank="species" species="rufobrunneus">
|
||
<emphasis id="B928EA86FF934670FFCFFBF9F9E4E17B" box="[124,472,1115,1143]" italics="true" pageId="2" pageNumber="66">Thripadectes rufobrunneus</emphasis>
|
||
</taxonomicName>
|
||
AMNH 3651
|
||
<collectingCountry id="F34B7604FF934670FCAEFBF9FBE2E17B" box="[797,990,1115,1143]" name="Costa Rica" pageId="2" pageNumber="66">COSTA RICA</collectingCountry>
|
||
: Prov. San Jose, Cerro de la Muerte,
|
||
<quantity id="4CA49B71FF934670FA0AFBF9FE26E17B" box="[1465,1562,1115,1143]" metricMagnitude="3" metricUnit="m" metricValue="3.35" pageId="2" pageNumber="66" unit="m" value="3350.0">3350 m</quantity>
|
||
<taxonomicName id="4C5C4D17FF934670FFCFFB31F99DE1A3" box="[124,417,1171,1199]" class="Aves" family="Furnariidae" genus="Automolus" kingdom="Animalia" order="Passeriformes" pageId="2" pageNumber="66" phylum="Chordata" rank="species" species="rufipileatus">
|
||
<emphasis id="B928EA86FF934670FFCFFB31F99DE1A3" box="[124,417,1171,1199]" italics="true" pageId="2" pageNumber="66">Automolus rufipileatus</emphasis>
|
||
</taxonomicName>
|
||
LSUMNS B1074
|
||
<collectingCountry id="F34B7604FF934670FCAFFB31FB98E1A3" box="[796,932,1171,1199]" name="Bolivia" pageId="2" pageNumber="66">BOLIVIA</collectingCountry>
|
||
: Depto. La Paz, Río Beni, ca
|
||
<quantity id="4CA49B71FF934670FAADFB31FD53E1A3" box="[1310,1391,1171,1199]" metricMagnitude="4" metricUnit="m" metricValue="2.0" pageId="2" pageNumber="66" unit="km" value="20.0">20 km</quantity>
|
||
by river N Puerto Linares,
|
||
<quantity id="4CA49B71FF934670F97DFB31FF23E1A3" box="[1742,1823,1171,1199]" metricMagnitude="2" metricUnit="m" metricValue="6.0" pageId="2" pageNumber="66" unit="m" value="600.0">600 m</quantity>
|
||
<taxonomicName id="4C5C4D17FF934670FFCFFB68F940E1EA" box="[124,380,1226,1254]" class="Aves" family="Furnariidae" genus="Lochmias" kingdom="Animalia" order="Passeriformes" pageId="2" pageNumber="66" phylum="Chordata" rank="species" species="nematura">
|
||
<emphasis id="B928EA86FF934670FFCFFB68F940E1EA" box="[124,380,1226,1254]" italics="true" pageId="2" pageNumber="66">Lochmias nematura</emphasis>
|
||
</taxonomicName>
|
||
AMNH 12074
|
||
<collectingCountry id="F34B7604FF934670FCAEFB68FBE1E1EA" box="[797,989,1226,1254]" name="Argentina" pageId="2" pageNumber="66">ARGENTINA</collectingCountry>
|
||
: Prov. Misiones, Parque Provincal Urugua-i, ca.
|
||
<quantity id="4CA49B71FF934670F9FAFB68FEBAE1EA" box="[1609,1670,1226,1254]" metricMagnitude="3" metricUnit="m" metricValue="1.0" pageId="2" pageNumber="66" unit="km" value="1.0">1 km</quantity>
|
||
W park
|
||
</paragraph>
|
||
<paragraph id="8BE33694FF934670FCAFFB4DFD79E007" blockId="2.[124,1823,617,1291]" box="[796,1349,1263,1291]" pageId="2" pageNumber="66">
|
||
headquarters, Ruta Provincial 19, ca
|
||
<quantity id="4CA49B71FF934670FB47FB4DFD79E007" box="[1268,1349,1263,1291]" metricMagnitude="2" metricUnit="m" metricValue="4.0" pageId="2" pageNumber="66" unit="m" value="400.0">400 m</quantity>
|
||
</paragraph>
|
||
<paragraph id="8BE33694FF934670FFCFFA90FDBEE08A" blockId="2.[124,1853,1330,1521]" pageId="2" pageNumber="66">
|
||
<taxonomicName id="4C5C4D17FF934670FFCFFA90F988E042" box="[124,436,1330,1358]" class="Aves" family="Furnariidae" genus="Dendrocincla" kingdom="Animalia" order="Passeriformes" pageId="2" pageNumber="66" phylum="Chordata" rank="species" species="fuliginosa">
|
||
<emphasis id="B928EA86FF934670FFCFFA90F988E042" box="[124,436,1330,1358]" italics="true" pageId="2" pageNumber="66">Dendrocincla fuliginosa</emphasis>
|
||
</taxonomicName>
|
||
AMNH 12706
|
||
<collectingCountry id="F34B7604FF934670FCAFFA90FBE3E042" box="[796,991,1330,1358]" name="Venezuela" pageId="2" pageNumber="66">VENEZUELA</collectingCountry>
|
||
: Estado Amazonas; Río Baria, Cerro de la Neblina Base Camp
|
||
<taxonomicName id="4C5C4D17FF934670FFCFFAC8F9BDE08A" box="[124,385,1386,1414]" class="Aves" family="Furnariidae" genus="Drymornis" kingdom="Animalia" order="Passeriformes" pageId="2" pageNumber="66" phylum="Chordata" rank="species" species="bridgesii">
|
||
<emphasis id="B928EA86FF934670FFCFFAC8F9BDE08A" box="[124,385,1386,1414]" italics="true" pageId="2" pageNumber="66">Drymornis bridgesii</emphasis>
|
||
</taxonomicName>
|
||
LSUMNS B25799
|
||
<collectingCountry id="F34B7604FF934670FCAFFAC8FBEFE08A" box="[796,979,1386,1414]" name="Paraguay" pageId="2" pageNumber="66">PARAGUAY</collectingCountry>
|
||
: Depto. Alto
|
||
<collectingCountry id="F34B7604FF934670FBCDFAC8FCC4E08A" box="[1150,1272,1386,1414]" name="Paraguay" pageId="2" pageNumber="66">Paraguay</collectingCountry>
|
||
, Madrejón
|
||
</paragraph>
|
||
<paragraph id="8BE33694FF934670FFCFFA03FF01E0FD" blockId="2.[124,1853,1330,1521]" pageId="2" pageNumber="66">
|
||
<taxonomicName id="4C5C4D17FF934670FFCFFA03F9AAE0B1" box="[124,406,1441,1469]" class="Aves" family="Furnariidae" genus="Xiphorhynchus" kingdom="Animalia" order="Passeriformes" pageId="2" pageNumber="66" phylum="Chordata" rank="species" species="fuscus">
|
||
<emphasis id="B928EA86FF934670FFCFFA03F9AAE0B1" box="[124,406,1441,1469]" italics="true" pageId="2" pageNumber="66">Xiphorhynchus fuscus</emphasis>
|
||
</taxonomicName>
|
||
LSUMNS B35576
|
||
<collectingCountry id="F34B7604FF934670FCAFFA03FBA8E0B1" box="[796,916,1441,1469]" name="Brazil" pageId="2" pageNumber="66">BRAZIL</collectingCountry>
|
||
: Estado Bahia, ca
|
||
<quantity id="4CA49B71FF934670FBCCFA03FCECE0B1" box="[1151,1232,1441,1469]" metricMagnitude="4" metricUnit="m" metricValue="1.6" pageId="2" pageNumber="66" unit="km" value="16.0">16 km</quantity>
|
||
W Porto Seguro RPPN Vera Cruz Tissue collections: LSUMNS – Louisiana State University Museum of Natural Science, Baton Rouge; AMNH – American Museum of
|
||
</paragraph>
|
||
<paragraph id="8BE33694FF934670FFCFF9BDFCABE337" blockId="2.[124,1175,1567,1595]" box="[124,1175,1567,1595]" pageId="2" pageNumber="66">Natural History, New York; FMNH – Field Museum of Natural History, Chicago.</paragraph>
|
||
<caption id="DF23661CFF924671FF24FBAAF9D0E169" httpUri="https://zenodo.org/record/189907/files/figure.png" pageId="3" pageNumber="67" targetBox="[192,1391,200,1006]" targetPageId="3">
|
||
<paragraph id="8BE33694FF924671FF24FBAAF9D0E169" blockId="3.[151,1436,1032,1125]" pageId="3" pageNumber="67">
|
||
<emphasis id="B928EA86FF924671FF24FBAAF925E12C" bold="true" box="[151,281,1032,1056]" pageId="3" pageNumber="67">FIGURE 1.</emphasis>
|
||
A maximum-likelihood phylogeny highlighting the lack of a sister relationship between
|
||
<taxonomicName id="4C5C4D17FF924671FB7AFBABFDA0E12C" box="[1225,1436,1033,1056]" class="Aves" family="Furnariidae" genus="Upucerthia" kingdom="Animalia" order="Passeriformes" pageId="3" pageNumber="67" phylum="Chordata" rank="species" species="serrana">
|
||
<emphasis id="B928EA86FF924671FB7AFBABFDA0E12C" box="[1225,1436,1033,1056]" italics="true" pageId="3" pageNumber="67">Upucerthia serrana</emphasis>
|
||
</taxonomicName>
|
||
and other species of
|
||
<emphasis id="B928EA86FF924671FECFFB89FAB0E14E" box="[380,652,1067,1090]" italics="true" pageId="3" pageNumber="67">
|
||
<taxonomicName id="4C5C4D17FF924671FECFFB89FA02E14E" box="[380,574,1067,1090]" class="Aves" family="Furnariidae" genus="Upucerthia" kingdom="Animalia" order="Passeriformes" pageId="3" pageNumber="67" phylum="Chordata" rank="species" species="sensu">
|
||
Upucerthia
|
||
<taxonomicNameLabel id="A21B57FDFF924671FDB2FB89FA02E14E" box="[513,574,1067,1090]" pageId="3" pageNumber="67" sensu="stricto">sensu</taxonomicNameLabel>
|
||
</taxonomicName>
|
||
stricto
|
||
</emphasis>
|
||
. Numbers above the branches indicate bootstrap support based on 150 maximum-likelihood replicates.
|
||
</paragraph>
|
||
</caption>
|
||
<paragraph id="8BE33694FF924671FF75FB31FD1BE309" blockId="3.[151,1437,1171,1957]" pageId="3" pageNumber="67">
|
||
Total DNA was extracted from
|
||
<quantity id="4CA49B71FF924671FDA8FB31FA63E1A6" box="[539,607,1171,1194]" metricMagnitude="-5" metricUnit="kg" metricValue="2.5" pageId="3" pageNumber="67" unit="mg" value="25.0">25 mg</quantity>
|
||
of pectoral muscle using the DNeasy kit (Qiagen) and the standard protocol. Following methods described in Chesser
|
||
<emphasis id="B928EA86FF924671FDE9FB14FAADE1C1" box="[602,657,1206,1229]" italics="true" pageId="3" pageNumber="67">et al.</emphasis>
|
||
(2007), we amplified and sequenced the mitochondrial genes ND3 and CO2, and the autosomal nuclear gene beta-fibrinogen intron 7. Following the same methods, we amplified and sequenced an additional mitochondrial gene (ND2) using the primers H6313 (
|
||
<bibRefCitation id="EFCD4B65FF924671FC55FB59FD24E01E" author="Johnson" box="[998,1304,1275,1298]" pageId="3" pageNumber="68" refString="Johnson, K. P. & Sorenson, M. D. (1998) Comparing molecular evolution in two mitochondrial protein coding genes (cytochrome b and ND 2) in the dabbling ducks (tribe: Anatini). Molecular Phylogenetics and Evolution, 10, 82 - 94." type="journal article" year="1998">Johnson and Sorenson 1998</bibRefCitation>
|
||
) and L5215 (
|
||
<bibRefCitation id="EFCD4B65FF924671FF2DFABCF90FE039" author="Hackett" box="[158,307,1310,1333]" pageId="3" pageNumber="68" refString="Hackett, S. J. (1996) Molecular phylogenetics and biogeography of tanagers in the genus Ramphocelus (Aves). Molecular Phylogenetics and Evolution, 5, 368 - 382." type="journal article" year="1996">Hackett 1996</bibRefCitation>
|
||
). Two additional nuclear protein-coding genes (RAG1 and RAG2) were included for one individual from each genus. These RAG sequences were taken from
|
||
<bibRefCitation id="EFCD4B65FF924671FD7CFAE3FB9CE054" box="[719,928,1345,1368]" pageId="3" pageNumber="68" refString="Moyle, R. G., Chesser, R. T., Brumfield, R. T., Tello, J. G., Marchese, D. J. & Cracraft, J. (2009) Phylogeny and phylogenetic classification of the antbirds, ovenbirds, woodcreepers, and allies (Aves: Passeriformes: Furnariides). Cladistics, 25, 386 - 405." type="journal article">
|
||
Moyle
|
||
<emphasis id="B928EA86FF924671FCAFFAE3FB6EE054" box="[796,850,1345,1368]" italics="true" pageId="3" pageNumber="67">et al.</emphasis>
|
||
(2009)
|
||
</bibRefCitation>
|
||
except for those of
|
||
<taxonomicName id="4C5C4D17FF924671FBCAFAE3FD70E054" box="[1145,1356,1345,1368]" class="Aves" family="Furnariidae" genus="Geocerthia" higherTaxonomySource="GBIF" kingdom="Animalia" order="Passeriformes" pageId="3" pageNumber="67" phylum="Chordata" rank="species" species="serrana">
|
||
<emphasis id="B928EA86FF924671FBCAFAE3FD70E054" box="[1145,1356,1345,1368]" italics="true" pageId="3" pageNumber="67">Geocerthia serrana</emphasis>
|
||
</taxonomicName>
|
||
, which we amplified and sequenced following the methods in
|
||
<bibRefCitation id="EFCD4B65FF924671FD54FAC1FB81E076" box="[743,957,1379,1402]" pageId="3" pageNumber="68" refString="Moyle, R. G., Chesser, R. T., Brumfield, R. T., Tello, J. G., Marchese, D. J. & Cracraft, J. (2009) Phylogeny and phylogenetic classification of the antbirds, ovenbirds, woodcreepers, and allies (Aves: Passeriformes: Furnariides). Cladistics, 25, 386 - 405." type="journal article">
|
||
Moyle
|
||
<emphasis id="B928EA86FF924671FC87FAC1FB56E076" box="[820,874,1379,1402]" italics="true" pageId="3" pageNumber="67">et al.</emphasis>
|
||
(2009)
|
||
</bibRefCitation>
|
||
. The six-gene concatenated dataset included 6,970 base pairs after alignment issues and unique inserts were excluded from BF7, the nuclear intron. An exception to a complete dataset was a partial BF7 sequence for the individual representing
|
||
<taxonomicName id="4C5C4D17FF924671FC74FA0BFCD0E0CC" box="[967,1260,1449,1472]" class="Aves" family="Furnariidae" genus="Ochetorhynchus" higherTaxonomySource="CoL" kingdom="Animalia" order="Passeriformes" pageId="3" pageNumber="67" phylum="Chordata" rank="species" species="andaecola">
|
||
<emphasis id="B928EA86FF924671FC74FA0BFCD0E0CC" box="[967,1260,1449,1472]" italics="true" pageId="3" pageNumber="67">Ochetorhynchus andaecola</emphasis>
|
||
</taxonomicName>
|
||
. In addition, the ND2 gene could not be amplified for the selected individuals of
|
||
<taxonomicName id="4C5C4D17FF924671FCC7FA69FC73E0EE" box="[884,1103,1483,1506]" class="Aves" family="Furnariidae" genus="Philydor" kingdom="Animalia" order="Passeriformes" pageId="3" pageNumber="67" phylum="Chordata" rank="species" species="pyrrhodes">
|
||
<emphasis id="B928EA86FF924671FCC7FA69FC73E0EE" box="[884,1103,1483,1506]" italics="true" pageId="3" pageNumber="67">Philydor pyrrhodes</emphasis>
|
||
</taxonomicName>
|
||
or
|
||
<taxonomicName id="4C5C4D17FF924671FBC4FA69FD6BE0EE" box="[1143,1367,1483,1506]" class="Aves" family="Furnariidae" genus="Lochmias" kingdom="Animalia" order="Passeriformes" pageId="3" pageNumber="67" phylum="Chordata" rank="species" species="nematura">
|
||
<emphasis id="B928EA86FF924671FBC4FA69FD6BE0EE" box="[1143,1367,1483,1506]" italics="true" pageId="3" pageNumber="67">Lochmias nematura</emphasis>
|
||
</taxonomicName>
|
||
; ND2 sequence from a second individual of these same species (amplified for a separate analysis) was used instead.
|
||
</paragraph>
|
||
<paragraph id="8BE33694FF924671FF75F9B3FC2AE2A9" blockId="3.[151,1437,1171,1957]" pageId="3" pageNumber="67">
|
||
Because the dataset included protein-coding mitochondrial genes, a nuclear intron and protein-coding nuclear genes, it was unlikely that a single nucleotide substitution model would provide the best fit to the data. To determine the best partition of the dataset, we evaluated six different partitioning regimes ranging from unpartitioned to the maximum of sixteen partitions. Partitions were examined by performing maximum likelihood (ML) analyses using RAxML 7.0.4 on the Cipres Portal V 1.5 (http://www.phylo.org/sub_sections/portal/). RAxML implements the GTR+Γ model and this was applied in each partition regime. We used the Akaike Information Criterion (AIC) to choose the best partitioning strategy, which was the GTR+ Γ+I model and fully partitioned dataset. We then used RAxML to evaluate nodal support by performing 150 bootstrap replicates (
|
||
<bibRefCitation id="EFCD4B65FF924671FDF8F8A1FB7EE216" author="Stamatakis" box="[587,834,1795,1818]" pageId="3" pageNumber="68" refString="Stamatakis, A., Hoover, P. & Rougemont, J. (2008) A Rapid Bootstrap Algorithm for the RAxML Web-Servers. Systematic Biology, 75, 758 - 771." type="journal article" year="2008">
|
||
Stamatakis
|
||
<emphasis id="B928EA86FF924671FD79F8A1FB3DE216" box="[714,769,1795,1818]" italics="true" pageId="3" pageNumber="67">et al.</emphasis>
|
||
2008
|
||
</bibRefCitation>
|
||
). The analysis resulted in a single maximum-likelihood tree (-log
|
||
<emphasis id="B928EA86FF924671FEB5F884F929E231" box="[262,277,1830,1853]" italics="true" pageId="3" pageNumber="67">L</emphasis>
|
||
= 28529.0) with high bootstrap support for most relationships (
|
||
<figureCitation id="13672A11FF924671FC6FF884FC22E231" box="[988,1054,1830,1853]" captionStart="FIGURE 1. A" captionStartId="3.[151,255,1032,1056]" captionTargetBox="[192,1391,200,1006]" captionTargetId="figure@3.[186,1401,194,1008]" captionTargetPageId="3" captionText="FIGURE 1. A maximum-likelihood phylogeny highlighting the lack of a sister relationship between Upucerthia serrana and other species of Upucerthia sensu stricto. Numbers above the branches indicate bootstrap support based on 150 maximum-likelihood replicates." httpUri="https://zenodo.org/record/189907/files/figure.png" pageId="3" pageNumber="67">Fig. 1</figureCitation>
|
||
). Individuals of
|
||
<emphasis id="B928EA86FF924671FB69F884F8E7E26C" italics="true" pageId="3" pageNumber="67">
|
||
<taxonomicName id="4C5C4D17FF924671FB69F884FDA0E231" box="[1242,1436,1830,1853]" class="Aves" family="Furnariidae" genus="Upucerthia" kingdom="Animalia" order="Passeriformes" pageId="3" pageNumber="67" phylum="Chordata" rank="species" species="sensu">
|
||
Upucerthia
|
||
<taxonomicNameLabel id="A21B57FDFF924671FAECF884FDA0E231" box="[1375,1436,1830,1853]" pageId="3" pageNumber="67" sensu="stricto">sensu</taxonomicNameLabel>
|
||
</taxonomicName>
|
||
stricto
|
||
</emphasis>
|
||
formed a strongly supported clade (100% bootstrap) that was sister to
|
||
<taxonomicName id="4C5C4D17FF924671FC7AF8EBFC08E26C" box="[969,1076,1865,1888]" class="Aves" family="Furnariidae" genus="Cinclodes" kingdom="Animalia" order="Passeriformes" pageId="3" pageNumber="67" phylum="Chordata" rank="genus">
|
||
<emphasis id="B928EA86FF924671FC7AF8EBFC08E26C" box="[969,1076,1865,1888]" italics="true" pageId="3" pageNumber="67">Cinclodes</emphasis>
|
||
</taxonomicName>
|
||
. The
|
||
<emphasis id="B928EA86FF924671FBC3F8EBFD61E26C" box="[1136,1373,1865,1888]" italics="true" pageId="3" pageNumber="67">
|
||
<taxonomicName id="4C5C4D17FF924671FBC3F8EBFCD5E26C" box="[1136,1257,1865,1888]" class="Aves" family="Furnariidae" genus="Upucerthia" kingdom="Animalia" order="Passeriformes" pageId="3" pageNumber="67" phylum="Chordata" rank="genus">Upucerthia</taxonomicName>
|
||
-
|
||
<taxonomicName id="4C5C4D17FF924671FB40F8EBFD61E26C" box="[1267,1373,1865,1888]" class="Aves" family="Furnariidae" genus="Cinclodes" kingdom="Animalia" order="Passeriformes" pageId="3" pageNumber="67" phylum="Chordata" rank="genus">Cinclodes</taxonomicName>
|
||
</emphasis>
|
||
clade was well supported (100%), and the single species
|
||
<taxonomicName id="4C5C4D17FF924671FD07F8C9FB19E28E" box="[692,805,1899,1922]" class="Aves" family="Furnariidae" genus="Geocerthia" higherTaxonomySource="GBIF" kingdom="Animalia" order="Passeriformes" pageId="3" pageNumber="67" phylum="Chordata" rank="species" species="serrana">
|
||
<emphasis id="B928EA86FF924671FD07F8C9FB19E28E" box="[692,805,1899,1922]" italics="true" pageId="3" pageNumber="67">G. serrana</emphasis>
|
||
</taxonomicName>
|
||
received strong support as sister to this clade (92%). These results clearly demonstrate that
|
||
<taxonomicName id="4C5C4D17FF924671FE59F82CFA66E2A9" box="[490,602,1934,1957]" class="Aves" family="Furnariidae" genus="Geocerthia" higherTaxonomySource="GBIF" kingdom="Animalia" order="Passeriformes" pageId="3" pageNumber="67" phylum="Chordata" rank="species" species="serrana">
|
||
<emphasis id="B928EA86FF924671FE59F82CFA66E2A9" box="[490,602,1934,1957]" italics="true" pageId="3" pageNumber="67">G. serrana</emphasis>
|
||
</taxonomicName>
|
||
is not a member of the
|
||
<taxonomicName id="4C5C4D17FF924671FCE5F82CFBF3E2A9" box="[854,975,1934,1957]" class="Aves" family="Furnariidae" genus="Upucerthia" kingdom="Animalia" order="Passeriformes" pageId="3" pageNumber="67" phylum="Chordata" rank="genus">
|
||
<emphasis id="B928EA86FF924671FCE5F82CFBF3E2A9" box="[854,975,1934,1957]" italics="true" pageId="3" pageNumber="67">Upucerthia</emphasis>
|
||
</taxonomicName>
|
||
clade.
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |