152 lines
16 KiB
XML
152 lines
16 KiB
XML
<document id="C1697613E3C86B2D24784838C6161B83" ID-DOI="10.1051/parasite/2023064" ID-ISSN="1776-1042" ID-PMC="PMC10732139" ID-PubMed="38117272" ID-Zenodo-Dep="12628828" IM.bibliography_approvedBy="guilherme" IM.illustrations_approvedBy="guilherme" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="GgImagineBatch,operationResults" IM.taxonomicNames_approvedBy="guilherme" IM.treatments_approvedBy="guilherme" checkinTime="1719954797701" checkinUser="felipe" docAuthor="Moyaba, Percy, Ouedraogo, Gisele Ms, Pagabeleguem, Soumaïla, Njokou, Flobert, Freitas, Ngambia, Vreysen, Marc Jb & Abd-Alla, Adly Mm" docDate="2023" docId="0B4D879BA1756249FFB9F926FCA84BFF" docLanguage="en" docName="Parasite.30.62.pdf" docOrigin="Parasite (Paris, France) 30 (62)" docSource="http://dx.doi.org/10.1051/parasite/2023064" docStyle="DocumentStyle:A40D95A4C09C797DBB807E438D2BF437.2:Parasite.2013-.journal_article" docStyleId="A40D95A4C09C797DBB807E438D2BF437" docStyleName="Parasite.2013-.journal_article" docStyleVersion="2" docTitle="Spiroplasma" docType="treatment" docVersion="1" lastPageNumber="8" masterDocId="F774FFE3A172624EFFC8FFDDFFD14E49" masterDocTitle="Prevalence of Spiroplasma and interaction with wild Glossina tachinoides microbiota" masterLastPageNumber="14" masterPageNumber="1" pageNumber="8" updateTime="1728043659770" updateUser="guilherme" zenodo-license-document="CC-BY-4.0">
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<mods:titleInfo id="A90E9A3901C8F1352EBB8A957DFA3A55">
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<mods:title id="D4A3971820D576298EC884503D2B8A37">Prevalence of Spiroplasma and interaction with wild Glossina tachinoides microbiota</mods:title>
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<mods:namePart id="4895AF54A50BFC6C08EF9A5B95A598FF">Moyaba, Percy</mods:namePart>
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<mods:affiliation id="3E990AA1CC3FEC2AB970C5AD8DCC7FF5">Insect Pest Control Laboratory, Joint FAO / IAEA Centre of Nuclear Techniques in Food and Agriculture, 1400 Vienna, Austria & Epidemiology, Parasites and Vectors, Agricultural Research Council-Onderstepoort Veterinary Research (ARC-OVR),</mods:affiliation>
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<mods:namePart id="7D35997BC213C0C8A734812BAEBAEA42">Ouedraogo, Gisele Ms</mods:namePart>
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<mods:affiliation id="E92A97794A179C1063FAC29D4AC7666A">Insectarium de Bobo Dioulasso - Campagne d’Eradication de la mouche tsetse et de la Trypanosomose (IBD-CETT),</mods:affiliation>
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<mods:roleTerm id="BF0659447DDD071AFAE597C5406A7498">Author</mods:roleTerm>
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<mods:namePart id="C1CCD0EE1889D610A2D0AA1AF1CEAEB9">Pagabeleguem, Soumaïla</mods:namePart>
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<mods:affiliation id="71177B489B687501748ED678AD56CCA2">Insectarium de Bobo Dioulasso - Campagne d’Eradication de la mouche tsetse et de la Trypanosomose (IBD-CETT), & University of Dedougou, B. P. 176, Dédougou 01, Burkina Faso</mods:affiliation>
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<mods:namePart id="707067AFACB3EC4299078C50BFDB7F1B">Njokou, Flobert</mods:namePart>
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<mods:affiliation id="0E6DBC9A6803A77E7395B9E9A7F087CE">Laboratory of Parasitology and Ecology, Faculty of Sciences, University of Yaounde I, Po. Box 812, Yaoundé, Cameroon</mods:affiliation>
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</mods:name>
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<mods:name id="425309F83741B322AD4B8062ACB20B69" type="personal">
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<mods:namePart id="531666F9BDF3F669DF3976344A7A5313">Freitas, Ngambia</mods:namePart>
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<mods:affiliation id="88732C1E0910A97D2804DF9000598E3E">Centre for Research in Infectious Diseases (CRID), Po. Box 13591, Yaoundé, Cameroon & Insect Pest Control Laboratory, Joint FAO / IAEA Centre of Nuclear Techniques in Food and Agriculture, 1400 Vienna, Austria</mods:affiliation>
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<mods:namePart id="64D3A21E72A7AA6D22B187E19284FAA2">Vreysen, Marc Jb</mods:namePart>
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<mods:affiliation id="B295EFD203C6600F4D06932A35010521">Insect Pest Control Laboratory, Joint FAO / IAEA Centre of Nuclear Techniques in Food and Agriculture, 1400 Vienna, Austria</mods:affiliation>
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<mods:namePart id="E868BE0D8DACB5496AA61D35DC215FC4">Abd-Alla, Adly Mm</mods:namePart>
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<mods:affiliation id="B4544B9CC7BC7C48888D13A66FE568F6">Insect Pest Control Laboratory, Joint FAO / IAEA Centre of Nuclear Techniques in Food and Agriculture, 1400 Vienna, Austria</mods:affiliation>
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<mods:title id="9B1AC1D98E12BA7D78E6910937521120">Parasite</mods:title>
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<mods:date id="DC912ABA0CC49E995191C34E40E2654D">2023</mods:date>
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<mods:title id="86F7DA7EA204C85473892F554EA9FA33">Paris, France</mods:title>
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<mods:number id="F1B45CC147F44A1F641C18CB1D6BFFD4">2023-12-19</mods:number>
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<mods:number id="AC55EE565AE314795C5EEE823F953ED5">30</mods:number>
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<mods:number id="5A78DD9B102B94C29CD80DED3C4626D4">62</mods:number>
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<mods:url id="BBF2F0E636438BF84C50363B4BB9F90B">http://dx.doi.org/10.1051/parasite/2023064</mods:url>
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<mods:classification id="54C626DD1BAA18537FF3B0C9A1DC90BF">journal article</mods:classification>
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<mods:identifier id="B857902D08DB7521D5F061F58649BED2" type="DOI">10.1051/parasite/2023064</mods:identifier>
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<mods:identifier id="220FDA6DB190EBAC74679693A6218AA7" type="ISSN">1776-1042</mods:identifier>
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<mods:identifier id="6C6CC7465AAAF5AE958AB9288E69AD67" type="PMC">PMC10732139</mods:identifier>
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<mods:identifier id="64E617DA794C44B3A33670CF0310B7F3" type="PubMed">38117272</mods:identifier>
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<mods:identifier id="4E956E43E55F97CF85881F498545F2B9" type="Zenodo-Dep">12628828</mods:identifier>
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<treatment id="0B4D879BA1756249FFB9F926FCA84BFF" LSID="urn:lsid:plazi:treatment:0B4D879BA1756249FFB9F926FCA84BFF" httpUri="http://treatment.plazi.org/id/0B4D879BA1756249FFB9F926FCA84BFF" lastPageNumber="8" pageId="7" pageNumber="8">
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<subSubSection id="CBFE6506A1756249FFB9F926FDDB4965" pageId="7" pageNumber="8" type="nomenclature">
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<paragraph id="835B368DA1756249FFB9F926FDDB4965" blockId="7.[113,589,1787,1836]" pageId="7" pageNumber="8">
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<emphasis id="B190EA9FA1756249FFB9F926FD9C4959" bold="true" box="[113,589,1787,1808]" pageId="7" pageNumber="8">Genetic variation and phylogenetic analysis</emphasis>
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<emphasis id="B190EA9FA1756249FFB9F8C5FDDB4965" bold="true" box="[113,522,1815,1836]" pageId="7" pageNumber="8">
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of
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<taxonomicName id="44E44D0EA1756249FF46F8CAFEC44965" ID-CoL="6466Q" authority="Saglio et al. 1973" box="[142,277,1815,1836]" family="Spiroplasmataceae" genus="Spiroplasma" kingdom="Bacteria" order="Entomoplasmatales" pageId="7" pageNumber="8" phylum="Tenericutes" rank="genus">
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<emphasis id="B190EA9FA1756249FF46F8CAFEC44965" bold="true" box="[142,277,1815,1836]" italics="true" pageId="7" pageNumber="8">Spiroplasma</emphasis>
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</taxonomicName>
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in wild
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<emphasis id="B190EA9FA1756249FEA5F8CAFDDB4965" bold="true" box="[365,522,1815,1836]" italics="true" pageId="7" pageNumber="8">G. tachinoides</emphasis>
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</emphasis>
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</paragraph>
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</subSubSection>
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<subSubSection id="CBFE6506A1756249FF51F88DFCA84BFF" pageId="7" pageNumber="8" type="description">
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<paragraph id="835B368DA1756249FF51F88DFCA84BFF" blockId="7.[113,768,1872,2048]" lastBlockId="7.[813,1467,1041,1462]" pageId="7" pageNumber="8">
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Among the 35 samples sequenced, 14 sequences from Comoe in
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<collectingCountry id="FBF3761DA1756249FF2DF8B2FEA749CF" box="[229,374,1903,1926]" name="Burkina Faso" pageId="7" pageNumber="8">Burkina Faso</collectingCountry>
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, two from the CIRDES colony, and two from Walewale in
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<collectingCountry id="FBF3761DA1756249FEA2F850FE7F49ED" box="[362,430,1933,1956]" name="Ghana" pageId="7" pageNumber="8">Ghana</collectingCountry>
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were used for the analysis. For the four genes used for the sequencing, 2,885 base pairs of sequence were generated. The comparison of the sequences showed a global nucleotide mutation rate of 0.06% with two SNPs (
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<tableCitation id="CE660336A1756249FCBDFBCCFC124A61" box="[885,963,1041,1064]" captionStart="Table 4" captionStartId="8.[113,171,1437,1458]" captionTargetPageId="8" captionText="Table 4. Summary of information on nucleotide polymorphisms detected in the partial sequences of Spiroplasma in G. tachinoides." pageId="7" pageNumber="8">Table 4</tableCitation>
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). These two SNPs were found on the
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<emphasis id="B190EA9FA1756249FA87FBCFFA524A60" box="[1359,1411,1042,1065]" italics="true" pageId="7" pageNumber="8">parE</emphasis>
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gene (1
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<collectionCode id="E5F5AE48A1756249FCF4FBEDFCBF4A0E" box="[828,878,1072,1095]" country="Malaysia" httpUri="http://biocol.org/urn:lsid:biocol.org:col:15856" lsid="urn:lsid:biocol.org:col:15856" name="Sabah Parks" pageId="7" pageNumber="8" type="Herbarium">SNP</collectionCode>
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/745 bp) and
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<emphasis id="B190EA9FA1756249FBC3FBEDFBEE4A0E" box="[1035,1087,1072,1095]" italics="true" pageId="7" pageNumber="8">rpoB</emphasis>
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gene (1
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<collectionCode id="E5F5AE48A1756249FB5FFBEDFB1A4A0E" box="[1175,1227,1072,1095]" country="Malaysia" httpUri="http://biocol.org/urn:lsid:biocol.org:col:15856" lsid="urn:lsid:biocol.org:col:15856" name="Sabah Parks" pageId="7" pageNumber="8" type="Herbarium">SNP</collectionCode>
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/1455). None of these substitutions were non-synonymous and the percentage of amino-acid mutations was 0.40% (1/248) for the
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<emphasis id="B190EA9FA1756249FA82FBB0FAAF4ACD" box="[1354,1406,1133,1156]" italics="true" pageId="7" pageNumber="8">parE</emphasis>
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gene and 0.20% (1/485) for the
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<emphasis id="B190EA9FA1756249FB83FB51FBAE4AEA" box="[1099,1151,1164,1187]" italics="true" pageId="7" pageNumber="8">rpoB</emphasis>
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gene. For the
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<emphasis id="B190EA9FA1756249FAD6FB51FA834AEA" box="[1310,1362,1164,1187]" italics="true" pageId="7" pageNumber="8">parE</emphasis>
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gene, the mutation resulted in the replacement of isoleucine to valine, but for the
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<emphasis id="B190EA9FA1756249FC56FB14FC034AA9" box="[926,978,1225,1248]" italics="true" pageId="7" pageNumber="8">rpoB</emphasis>
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gene from phenylalanine to serine. All samples from all locations showed the same profile for the 16S
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<emphasis id="B190EA9FA1756249FAB7FB3AFA6B4AB7" box="[1407,1466,1255,1278]" italics="true" pageId="7" pageNumber="8">rRNA</emphasis>
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and
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<emphasis id="B190EA9FA1756249FC95FADBFC5A4B54" box="[861,907,1286,1309]" italics="true" pageId="7" pageNumber="8">fruR</emphasis>
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genes. In
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<collectingCountry id="FBF3761DA1756249FBCAFADBFB404B54" box="[1026,1169,1286,1309]" name="Burkina Faso" pageId="7" pageNumber="8">Burkina Faso</collectingCountry>
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and
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<collectingCountry id="FBF3761DA1756249FB04FADBFAC34B54" box="[1228,1298,1286,1309]" name="Ghana" pageId="7" pageNumber="8">Ghana</collectingCountry>
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, two genotypes were found, while only one was detected for CIRDES (
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<tableCitation id="CE660336A1756249FAABFAF9FA6B4B72" box="[1379,1466,1316,1339]" captionStart="Table 5" captionStartId="9.[113,171,238,259]" captionTargetPageId="9" captionText="Table 5. Alleles of Spiroplasma in different locations of tested countries. Numbers between brackets indicate the number of sequences tested per each allele." pageId="7" pageNumber="8">Tables 5</tableCitation>
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and
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<tableCitation id="CE660336A1756249FC92FA9EFCB64B13" box="[858,871,1347,1370]" captionStart="Table 6" captionStartId="9.[113,171,532,553]" captionTargetPageId="9" captionText="Table 6. Spiroplasma haplotypes found in the same individuals collected in East and Southern African countries. The frequency of occurrence of the haplotypes is shown in the last column. The number in parentheses indicates the total number of flies in which the haplotype was detected." pageId="7" pageNumber="8">6</tableCitation>
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). Three different haplotypes were found in the sampling areas with a specific haplotype for the CIRDES colony and
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<collectingCountry id="FBF3761DA1756249FCE5FA5DFC664BDE" box="[813,951,1408,1431]" name="Burkina Faso" pageId="7" pageNumber="8">Burkina Faso</collectingCountry>
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and
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<collectingCountry id="FBF3761DA1756249FC22FA5DFBFF4BDE" box="[1002,1070,1408,1431]" name="Ghana" pageId="7" pageNumber="8">Ghana</collectingCountry>
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sharing the same haplotypes (
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<tableCitation id="CE660336A1756249FAAEFA5DFA654BDE" box="[1382,1460,1408,1431]" captionStart="Table 6" captionStartId="9.[113,171,532,553]" captionTargetPageId="9" captionText="Table 6. Spiroplasma haplotypes found in the same individuals collected in East and Southern African countries. The frequency of occurrence of the haplotypes is shown in the last column. The number in parentheses indicates the total number of flies in which the haplotype was detected." pageId="7" pageNumber="8">Table 6</tableCitation>
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,
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<figureCitation id="1BDF2A08A1756249FCE5FA42FCBA4BFF" box="[813,875,1439,1462]" captionStart="Figure 6" captionStartId="9.[113,180,1536,1557]" captionTargetBox="[151,1436,934,1516]" captionTargetId="figure-429@9.[151,1436,934,1516]" captionTargetPageId="9" captionText="Figure 6. Neighbor-Joining consensus tree (A) and Haplotype network analysis (B) of the Spiroplasma in G. tachinoides in Burkina Faso and Ghana. (A) Neighbor-Joining consensus tree was built after alignment of all the concatenated sequences. The method used to calculate the distance was Tamura-Nei. (B) Haplotype network generated based on the ML tree which was generated based on Spiroplasma sequences. The black lineaments on the lines represent mutation events between the haplotypes. The different colors represent the locations. The reference sequence of Spiroplasma in G. fuscipes fuscipes species (KX159391) was used as the outgroup for construction of both phylogenetic tree and haplotype network." figureDoi="http://doi.org/10.5281/zenodo.12628838" httpUri="https://zenodo.org/record/12628838/files/figure.png" pageId="7" pageNumber="8">Fig. 6</figureCitation>
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).
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |