206 lines
21 KiB
XML
206 lines
21 KiB
XML
<document id="322204DB38B50D045BC435BC488C6EB1" ID-CLB-Dataset="20834" ID-DOI="10.11646/phytotaxa.532.3.6" ID-GBIF-Dataset="78a4ba4e-9873-4489-92f8-9cf970f26a0d" ID-ISSN="1179-3163" ID-Zenodo-Dep="5964718" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="existingObjects,plazi" IM.taxonomicNames_approvedBy="felipe" checkinTime="1643788681942" checkinUser="plazi" docAuthor="Kim, Do-Hyun, Lee, Nam-Ju, Yoon, Sung-Ro, Kim, Taehee, Ki, Jang-Seu & Lee, Ok-Min" docDate="2022" docId="03BC87FCA266A20C5AA6FAEFFE54DB43" docLanguage="en" docName="phytotaxa.532.3.6.pdf" docOrigin="Phytotaxa 532 (3)" docStyle="DocumentStyle:96748F8F1B6C902996E134952A3A36B9.11:Phytotaxa.2014-.journal_article" docStyleId="96748F8F1B6C902996E134952A3A36B9" docStyleName="Phytotaxa.2014-.journal_article" docStyleVersion="11" docTitle="Porphyrosiphon annulatus D. Kim, N. Lee, S. Yoon, T. Kim, Ki & O. Lee 2022, sp. nov." docType="treatment" docVersion="9" lastPageNumber="293" masterDocId="FF85FF84A263A2095A2EFFD3FF96D365" masterDocTitle="Porphyrosiphon annulatus sp. nov. (Oscillatoriales, Cyanobacteria) isolated on moist soil in Suwon, Republic of Korea" masterLastPageNumber="300" masterPageNumber="288" pageNumber="293" updateTime="1702002981473" updateUser="plazi" zenodo-license-figures="UNSPECIFIED" zenodo-license-treatments="UNSPECIFIED">
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<mods:title id="8B70854E9D69C2623E73EB3C3915B680">Porphyrosiphon annulatus sp. nov. (Oscillatoriales, Cyanobacteria) isolated on moist soil in Suwon, Republic of Korea</mods:title>
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<mods:namePart id="FAEB62C5B1B04CA5E365A30ADB4CAC30">Kim, Do-Hyun</mods:namePart>
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<mods:affiliation id="C6B32836F8A05A5EAF9A8C43A4445519">kim 7474747 @ naver. com; https: // orcid. org / 0000 - 0002 - 2075 - 143 X</mods:affiliation>
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<mods:nameIdentifier id="71C59003BB189CFF540D8B873EF0450C" type="email">kim7474747@naver.com</mods:nameIdentifier>
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<mods:roleTerm id="E929F1A246F747190CB85DB3F805C2CA">Author</mods:roleTerm>
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<mods:namePart id="F887D35130507DD904CCC7AD3B1A7970">Lee, Nam-Ju</mods:namePart>
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<mods:affiliation id="706B09C1BBB1B6CBB8596622B9F630CA">njlee @ kyonggi. ac. kr; https: // orcid. org / 0000 - 0002 - 2403 - 1763</mods:affiliation>
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<mods:nameIdentifier id="DC8BDE8310B98DCE5748CD797877B3D7" type="email">njlee@kyonggi.ac.kr</mods:nameIdentifier>
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<mods:namePart id="19324BC77318DFA59B41403E6BD7F88D">Yoon, Sung-Ro</mods:namePart>
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<mods:affiliation id="F56243D94F6C54E89DFB95C2AFB83208">charm 942 @ naver. com; https: // orcid. org / 0000 - 0002 - 3836 - 0760</mods:affiliation>
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<mods:nameIdentifier id="AD92BF59991C8C114C46DCA6E54983FB" type="email">charm942@naver.com</mods:nameIdentifier>
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<mods:namePart id="1BB4D1A2025D19D57D2E6C36D74BD475">Kim, Taehee</mods:namePart>
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<mods:affiliation id="37FBD93F3CEF0168FBDE1DD5514F038E">Department of Biotechnology, Sangmyung University, Seoul 03016, Republic of Korea & xogml 105 @ gmail. com; https: // orcid. org / 0000 - 0002 - 3203 - 1165</mods:affiliation>
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<mods:nameIdentifier id="BF87F39BF343BC3A53A207FF751E4B61" type="email">xogml105@gmail.com</mods:nameIdentifier>
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<mods:namePart id="821293E56759A63156E00BF6C8DE24CE">Ki, Jang-Seu</mods:namePart>
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<mods:affiliation id="2FC04F86EADA41EFCAFA32EDE698772F">Department of Biotechnology, Sangmyung University, Seoul 03016, Republic of Korea & kijs @ smu. ac. kr; https: // orcid. org / 0000 - 0002 - 6007 - 9262</mods:affiliation>
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<mods:nameIdentifier id="5919F3813EFA38E0C50DFA051E836656" type="email">kijs@smu.ac.kr</mods:nameIdentifier>
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<mods:namePart id="0A88032B0FD2418314102E8EF9519D22">Lee, Ok-Min</mods:namePart>
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<mods:nameIdentifier id="C5A159FF797D43256A2281C90D708876" type="ORCID">0000-0003-3313-389X</mods:nameIdentifier>
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<mods:affiliation id="0B58F898441F8AFD751F93018F9E9DDE">omlee @ kyonggi. ac. kr; https: // orcid. org / 0000 - 0003 - 3313 - 389 X</mods:affiliation>
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<mods:nameIdentifier id="808F1DAE21CD4767059C360CBF47F09F" type="email">omlee@kyonggi.ac.kr</mods:nameIdentifier>
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<mods:title id="87E94D3D7735225E8A7BA1EBABBFF603">Phytotaxa</mods:title>
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<mods:part id="42DCE569D9C283E4B3BCC265FCD117D8">
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<mods:date id="68CBBD9F365E660FDB79F7815151E870">2022</mods:date>
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<mods:number id="7493136911B839E3C02D273A1CB650BA">2022-02-02</mods:number>
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<mods:number id="525BD583C4D1A9F61A3C2D07C7507BB0">532</mods:number>
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<mods:classification id="B0CE8EE6B5365B16C3F49FA415B9957A">journal article</mods:classification>
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<mods:identifier id="181CC534195FA2BF5CEE8B19CB71192E" type="CLB-Dataset">20834</mods:identifier>
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<mods:identifier id="9FBF04D8624700503144BD9C6520FCDD" type="DOI">10.11646/phytotaxa.532.3.6</mods:identifier>
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<mods:identifier id="B65C77D051338396BE8E4DEAEED34520" type="ISSN">1179-3163</mods:identifier>
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<mods:identifier id="0BFAFFDFED29F2A0B12E5EDEA5C2EFD2" type="Zenodo-Dep">5964718</mods:identifier>
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<treatment id="03BC87FCA266A20C5AA6FAEFFE54DB43" ID-DOI="http://doi.org/10.5281/zenodo.6301158" ID-GBIF-Taxon="193246769" ID-Zenodo-Dep="6301158" LSID="urn:lsid:plazi:treatment:03BC87FCA266A20C5AA6FAEFFE54DB43" httpUri="http://treatment.plazi.org/id/03BC87FCA266A20C5AA6FAEFFE54DB43" lastPageNumber="293" pageId="5" pageNumber="293">
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<subSubSection id="C30F6561A266A20C5AA6FAEFFB11D633" box="[136,1159,1340,1367]" pageId="5" pageNumber="293" type="nomenclature">
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<paragraph id="8BAA36EAA266A20C5AA6FAEFFB11D633" blockId="5.[136,1159,1340,1367]" box="[136,1159,1340,1367]" pageId="5" pageNumber="293">
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<heading id="D0E28186A266A20C5AA6FAEFFB11D633" box="[136,1159,1340,1367]" fontSize="11" level="2" pageId="5" pageNumber="293" reason="3">
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<taxonomicName id="4C154D69A266A20C5AA6FAEFFC46D632" authority="D. Kim, N. Lee, S. Yoon, T. Kim, Ki & O. Lee" authorityName="D. Kim, N. Lee, S. Yoon, T. Kim, Ki & O. Lee" authorityYear="2022" box="[136,976,1340,1367]" class="Cyanophyceae" family="Oscillatoriaceae" genus="Porphyrosiphon" kingdom="Bacteria" order="Nostocales" pageId="5" pageNumber="293" phylum="Cyanobacteria" rank="species" species="annulatus" status="sp. nov.">
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<emphasis id="B961EAF8A266A20C5AA6FAEFFE29D632" bold="true" box="[136,447,1340,1367]" italics="true" pageId="5" pageNumber="293">Porphyrosiphon annulatus</emphasis>
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D. Kim, N. Lee, S. Yoon, T. Kim, Ki & O. Lee
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</taxonomicName>
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||
<emphasis id="B961EAF8A266A20C59F9FAEEFBBAD633" box="[983,1068,1341,1366]" italics="true" pageId="5" pageNumber="293">
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||
<taxonomicNameLabel id="A2525783A266A20C59F9FAEEFBBAD633" box="[983,1068,1341,1366]" pageId="5" pageNumber="293" rank="species">sp. nov.</taxonomicNameLabel>
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||
</emphasis>
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||
(
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||
<figureCitation id="132E2A6FA266A20C5E14FAEFFBE8D633" box="[1082,1150,1340,1366]" captionStart="FIGURE 2" captionStartId="3.[136,229,1902,1924]" captionTargetBox="[328,1265,256,1878]" captionTargetId="figure-55@3.[314,1273,245,1878]" captionTargetPageId="3" captionText="FIGURE 2. Microphotographs of Porphyrosiphon annulatus the raw (A–C) and culture samples (D–J) from the reference strain (FBCC- A260). (A–B) Yellowish-brown and blue-green filaments, (C) Transversely annular lamellations in the sheath (arrow), (D) Colony of trichomes (sheath initially colorless and later yellow-brown or pink), (E, F) Longitudinal lamellations in the sheath (arrow), (G–I) Transversely annular lamellations in the sheath (arrows), (J) Two trichomes within a sheath; Scale bars = (A–C, E–J) 10 µm, (D) 50 µm." figureDoi="http://doi.org/10.5281/zenodo.5964724" httpUri="https://zenodo.org/record/5964724/files/figure.png" pageId="5" pageNumber="293">Fig. 2</figureCitation>
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)
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</heading>
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||
</paragraph>
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||
</subSubSection>
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||
<subSubSection id="C30F6561A266A20C5AA6FA57FC5CD537" pageId="5" pageNumber="293" type="description">
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||
<paragraph id="8BAA36EAA266A20C5AA6FA57FC5CD537" blockId="5.[136,1452,1412,2087]" pageId="5" pageNumber="293">
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<emphasis id="B961EAF8A266A20C5AA6FA57FE8AD6FB" bold="true" box="[136,284,1412,1438]" pageId="5" pageNumber="293">Description:</emphasis>
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Thallus tomentose, expanded, and blue-green to yellowish-brown. Filament straight or slightly curved and up to 30 µm in width, a filament contains a solitary trichome, but occasionally two. Sheaths firm and thick, longitudinally and transversely annular lamellated, yellowish-brown in nature. Sheaths initially colorless and later yellow-brown or pink in the culture. Trichome blue to green, constricted at the cross-walls, not attenuated at the end, motile. Cells flat rectangle with L/W 1/3–1/4, 4.2–6.1 μm long and 11.1–23.2 μm wide. Apical cells conical or round without calyptra. Reproduction with hormogonia formed by necridic cells.
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</paragraph>
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</subSubSection>
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<subSubSection id="C30F6561A266A20C5A93F98FFE3BD5DB" pageId="5" pageNumber="293" type="diagnosis">
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<paragraph id="8BAA36EAA266A20C5A93F98FFE3BD5DB" blockId="5.[136,1452,1412,2087]" pageId="5" pageNumber="293">
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<emphasis id="B961EAF8A266A20C5A93F98FFEACD513" bold="true" box="[189,314,1628,1654]" pageId="5" pageNumber="293">Diagnosis:</emphasis>
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<taxonomicName id="4C154D69A266A20C5B6FF98FFDFAD513" authorityName="D. Kim, N. Lee, S. Yoon, T. Kim, Ki & O. Lee" authorityYear="2022" box="[321,620,1628,1654]" class="Cyanophyceae" family="Oscillatoriaceae" genus="Porphyrosiphon" kingdom="Bacteria" order="Nostocales" pageId="5" pageNumber="293" phylum="Cyanobacteria" rank="species" species="annulatus">
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<emphasis id="B961EAF8A266A20C5B6FF98FFDFAD513" box="[321,620,1628,1654]" italics="true" pageId="5" pageNumber="293">Porphyrosiphon annulatus</emphasis>
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</taxonomicName>
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had a relatively large trichome by the interspecies comparison, possessed shorter and flatter rectangular cells compared to the
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<typeStatus id="54AE8848A266A20C58DCF952FCB4D5FE" box="[754,802,1665,1691]" pageId="5" pageNumber="293">type</typeStatus>
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species
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<taxonomicName id="4C154D69A266A20C59A4F952FB9FD5FF" authorityName="Kutzing ex Gomont" authorityYear="1892" box="[906,1033,1665,1690]" class="Cyanophyceae" family="Oscillatoriaceae" genus="Porphyrosiphon" kingdom="Bacteria" order="Nostocales" pageId="5" pageNumber="293" phylum="Cyanobacteria" rank="species" species="notarisii">
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<emphasis id="B961EAF8A266A20C59A4F952FB9FD5FF" box="[906,1033,1665,1690]" italics="true" pageId="5" pageNumber="293">P. notarisii</emphasis>
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</taxonomicName>
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, and displayed transversely annular lamellations in the sheath.
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</paragraph>
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</subSubSection>
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<subSubSection id="C30F6561A266A20C5A93F91BFA1FD587" box="[189,1417,1736,1763]" pageId="5" pageNumber="293" type="etymology">
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<paragraph id="8BAA36EAA266A20C5A93F91BFA1FD587" blockId="5.[136,1452,1412,2087]" box="[189,1417,1736,1763]" pageId="5" pageNumber="293">
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<emphasis id="B961EAF8A266A20C5A93F91BFEDED587" bold="true" box="[189,328,1736,1762]" pageId="5" pageNumber="293">Etymology:</emphasis>
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“
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<taxonomicName id="4C154D69A266A20C5B75F91BFE5FD587" authorityName="D. Kim, N. Lee, S. Yoon, T. Kim, Ki & O. Lee" authorityYear="2022" box="[347,457,1736,1762]" class="Cyanophyceae" family="Oscillatoriaceae" genus="Porphyrosiphon" kingdom="Bacteria" order="Nostocales" pageId="5" pageNumber="293" phylum="Cyanobacteria" rank="species" species="annulatus">
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<emphasis id="B961EAF8A266A20C5B75F91BFE5FD587" box="[347,457,1736,1762]" italics="true" pageId="5" pageNumber="293">annulatus</emphasis>
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</taxonomicName>
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” was named so because sheath yielded a feature of transversely annular lamellations.
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</paragraph>
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</subSubSection>
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||
<subSubSection id="C30F6561A266A20C5A93F93FFE54DB43" pageId="5" pageNumber="293" type="materials_examined">
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<paragraph id="8BAA36EAA266A20C5A93F93FFC47D44F" blockId="5.[136,1452,1412,2087]" pageId="5" pageNumber="293">
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||
<materialsCitation id="3B7D3CB7A266A20C5A93F93FFC47D44F" ID-GBIF-Occurrence="3461745302" collectionCode="FBCC-A" country="South Korea" county="Suwon-si" latitude="37.30486" location="Iui-dong" longLatPrecision="1" longitude="127.03428" municipality="Yeongtong-gu" pageId="5" pageNumber="293" specimenCode="FBCC-A1260" specimenCount="1" stateProvince="Gyeonggi-do" typeStatus="holotype">
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||
<emphasis id="B961EAF8A266A20C5A93F93FFD91D463" bold="true" box="[189,519,1772,1798]" pageId="5" pageNumber="293">
|
||
<typeStatus id="54AE8848A266A20C5A93F93FFEBCD463" box="[189,298,1772,1798]" pageId="5" pageNumber="293" type="holotype">Holotype</typeStatus>
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(designated here):
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</emphasis>
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A formalin fixed specimen, NIBRCY0000001276 in the
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<location id="8ECA6031A266A20C5EA9F93FFA96D463" LSID="urn:lsid:plazi:treatment:03BC87FCA266A20C5AA6FAEFFE54DB43:8ECA6031A266A20C5EA9F93FFA96D463" box="[1159,1280,1772,1798]" municipality="National Institute of Biological Resources" name="Herbarium" pageId="5" pageNumber="293">Herbarium</location>
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at the
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<collectingMunicipality id="6BCEAC90A266A20C5F65F93FFE6ED44E" pageId="5" pageNumber="293">National Institute of Biological Resources</collectingMunicipality>
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(KB), from cultured strain
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<specimenCode id="DBB39E91A266A20C5902F8C3FC5AD44F" box="[812,972,1808,1834]" collectionCode="FBCC-A" pageId="5" pageNumber="293">FBCC-A1260</specimenCode>
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.
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</materialsCitation>
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||
</paragraph>
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||
<paragraph id="8BAA36EAA266A20C5A93F8E7FDA1D42B" blockId="5.[136,1452,1412,2087]" box="[189,567,1844,1870]" pageId="5" pageNumber="293">
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<emphasis id="B961EAF8A266A20C5A93F8E7FE1DD42B" bold="true" box="[189,395,1844,1870]" pageId="5" pageNumber="293">Reference strain:</emphasis>
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<collectionCode id="ED04AE2FA266A20C5BBCF8E7FE6AD42B" box="[402,508,1844,1870]" pageId="5" pageNumber="293">FBCC-A</collectionCode>
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1260.
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</paragraph>
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<paragraph id="8BAA36EAA266A20C5A93F88BFC36D416" blockId="5.[136,1452,1412,2087]" box="[189,928,1880,1907]" pageId="5" pageNumber="293">
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<emphasis id="B961EAF8A266A20C5A93F88BFE08D417" bold="true" box="[189,414,1880,1906]" pageId="5" pageNumber="293">Additional strains:</emphasis>
|
||
<collectionCode id="ED04AE2FA266A20C5B8BF88BFD99D417" box="[421,527,1880,1906]" pageId="5" pageNumber="293">FBCC-A</collectionCode>
|
||
1263,
|
||
<collectionCode id="ED04AE2FA266A20C587EF88BFD2FD417" box="[592,697,1880,1906]" pageId="5" pageNumber="293">FBCC-A</collectionCode>
|
||
1264,
|
||
<collectionCode id="ED04AE2FA266A20C58D5F88BFCF3D416" box="[763,869,1880,1907]" pageId="5" pageNumber="293">FBCC-A</collectionCode>
|
||
1265.
|
||
</paragraph>
|
||
<paragraph id="8BAA36EAA266A20C5A93F8AFFF30D4DF" blockId="5.[136,1452,1412,2087]" pageId="5" pageNumber="293">
|
||
<emphasis id="B961EAF8A266A20C5A93F8AFFEF5D4F3" bold="true" box="[189,355,1916,1942]" pageId="5" pageNumber="293">Type locality:</emphasis>
|
||
<location id="8ECA6031A266A20C5B40F8AFFE47D4F3" LSID="urn:lsid:plazi:treatment:03BC87FCA266A20C5AA6FAEFFE54DB43:8ECA6031A266A20C5B40F8AFFE47D4F3" box="[366,465,1916,1942]" country="South Korea" county="Suwon-si" latitude="37.30486" longLatPrecision="1" longitude="127.03428" municipality="Yeongtong-gu" name="Iui-dong" pageId="5" pageNumber="293" stateProvince="Gyeonggi-do">Iui-dong</location>
|
||
,
|
||
<collectingMunicipality id="6BCEAC90A266A20C5BF1F8AEFD17D4F2" box="[479,641,1917,1943]" pageId="5" pageNumber="293">Yeongtong-gu</collectingMunicipality>
|
||
,
|
||
<collectingCounty id="62CB4E66A266A20C58A1F8AFFD6AD4F3" box="[655,764,1916,1942]" pageId="5" pageNumber="293">Suwon-si</collectingCounty>
|
||
,
|
||
<collectingRegion id="49D1F808A266A20C5925F8AFFC34D4F3" box="[779,930,1916,1942]" country="South Korea" name="Gyeonggi" pageId="5" pageNumber="293">Gyeonggi-do</collectingRegion>
|
||
,
|
||
<collectingCountry id="F302767AA266A20C599EF8AEFC62D4F2" box="[944,1012,1917,1943]" name="South Korea" pageId="5" pageNumber="293">Korea</collectingCountry>
|
||
(
|
||
<geoCoordinate id="EE21502DA266A20C5E26F8AFFB3CD4F2" box="[1032,1194,1916,1943]" degrees="37" direction="north" minutes="18" orientation="latitude" pageId="5" pageNumber="293" precision="1" seconds="17.5" value="37.30486">37°18’17.5”N</geoCoordinate>
|
||
;
|
||
<geoCoordinate id="EE21502DA266A20C5E97F8AFFAF5D4F3" box="[1209,1379,1916,1942]" degrees="127" direction="east" minutes="02" orientation="longitude" pageId="5" pageNumber="293" precision="1" seconds="03.4" value="127.03428">127°02’03.4”E</geoCoordinate>
|
||
) (
|
||
<figureCitation id="132E2A6FA266A20C5F50F8AFFF03D4DF" captionStart="FIGURE 1" captionStartId="2.[136,229,899,921]" captionTargetBox="[151,1434,281,872]" captionTargetId="figure-83@2.[151,1436,281,874]" captionTargetPageId="2" captionText="FIGURE 1. Map showing site in the Mt. Gwanggyo, Republic of Korea. (A) The aerial view (A red circle is collection site), (B) The habitat of a collection site." figureDoi="http://doi.org/10.5281/zenodo.5964720" httpUri="https://zenodo.org/record/5964720/files/figure.png" pageId="5" pageNumber="293">Fig. 1</figureCitation>
|
||
).
|
||
</paragraph>
|
||
<paragraph id="8BAA36EAA266A20C5A93F817FCF1D4BB" blockId="5.[136,1452,1412,2087]" box="[189,871,1988,2015]" pageId="5" pageNumber="293">
|
||
<emphasis id="B961EAF8A266A20C5A93F817FEB5D4BB" bold="true" box="[189,291,1988,2014]" pageId="5" pageNumber="293">Habitat:</emphasis>
|
||
On the moist soil under the rock in Mt. Gwanggyo.
|
||
</paragraph>
|
||
<paragraph id="8BAA36EAA266A20C5A93F83BFE54DB43" blockId="5.[136,1452,1412,2087]" pageId="5" pageNumber="293">
|
||
<emphasis id="B961EAF8A266A20C5A93F83BFEEFDB67" bold="true" box="[189,377,2024,2050]" pageId="5" pageNumber="293">Gene sequences</emphasis>
|
||
: 16S rRNA, 16S–23S ITS, and 23S rRNA gene sequences with GenBank accession numbers of
|
||
<accessionNumber id="9446AB09A266A20C5AA6F7DFFE99DB43" box="[136,271,2060,2086]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/MW880693" pageId="5" pageNumber="293">
|
||
<collectionCode id="ED04AE2FA266A20C5AA6F7DFFF2ADB43" box="[136,188,2060,2086]" country="Netherlands" name="Museum Wasmann" pageId="5" pageNumber="293">MW</collectionCode>
|
||
880693
|
||
</accessionNumber>
|
||
to
|
||
<accessionNumber id="9446AB09A266A20C5B1DF7DFFE28DB43" box="[307,446,2060,2086]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/MW880696" pageId="5" pageNumber="293">
|
||
<collectionCode id="ED04AE2FA266A20C5B1DF7DFFEFEDB43" box="[307,360,2060,2086]" country="Netherlands" name="Museum Wasmann" pageId="5" pageNumber="293">MW</collectionCode>
|
||
880696
|
||
</accessionNumber>
|
||
.
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |