144 lines
14 KiB
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144 lines
14 KiB
XML
<document ID-DOI="http://dx.doi.org/10.3897/mycokeys.85.70552" ID-GBIF-Dataset="5fee9d93-30ed-4be8-8997-0e58d3e15954" ID-PMC="PMC8716509" ID-Pensoft-Pub="1314-4049-85-127" ID-Pensoft-UUID="9BE6BB9F2C2850CD9A64958C2F3D777A" ID-PubMed="35068984" ModsDocID="1314-4049-85-127" checkinTime="1640261778132" checkinUser="pensoft" docAuthor="Szczepanska, Katarzyna, Guzow-Krzeminska, Beata & Urbaniak, Jacek" docDate="2021" docId="ADC70C7B179AF60C75A120E01B22CEFA" docLanguage="en" docName="MycoKeys 85: 127-160" docOrigin="MycoKeys 85" docPubDate="2021-12-22" docSource="http://dx.doi.org/10.3897/mycokeys.85.70552" docTitle="Melanelia agnata (Nyl.) A. Thell" docType="treatment" docVersion="5" id="9BE6BB9F2C2850CD9A64958C2F3D777A" lastPageNumber="127" masterDocId="9BE6BB9F2C2850CD9A64958C2F3D777A" masterDocTitle="Infraspecific variation of some brown Parmeliae (in Poland) - a comparison of ITS rDNA and non-molecular characters" masterLastPageNumber="160" masterPageNumber="127" pageNumber="127" updateTime="1668136762060" updateUser="ExternalLinkService">
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<mods:mods xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo>
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<mods:title>Infraspecific variation of some brown Parmeliae (in Poland) - a comparison of ITS rDNA and non-molecular characters</mods:title>
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</mods:titleInfo>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Szczepanska, Katarzyna</mods:namePart>
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<mods:nameIdentifier type="ORCID">https://orcid.org/0000-0002-7752-3024</mods:nameIdentifier>
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<mods:affiliation>Department of Botany and Plant Ecology, Wroclaw University of Environmental and Life Sciences, pl. Grunwaldzki 24 a, PL- 50 - 363 Wroclaw, Poland</mods:affiliation>
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<mods:nameIdentifier type="email">katarzyna.szczepanska@upwr.edu.pl</mods:nameIdentifier>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Guzow-Krzeminska, Beata</mods:namePart>
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<mods:nameIdentifier type="ORCID">https://orcid.org/0000-0003-0805-7987</mods:nameIdentifier>
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<mods:affiliation>Department of Plant Taxonomy and Nature Conservation, Faculty of Biology, University of Gdansk, Wita Stwosza 59, PL- 80 - 308 Gdansk, Poland</mods:affiliation>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Urbaniak, Jacek</mods:namePart>
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<mods:nameIdentifier type="ORCID">https://orcid.org/0000-0002-1300-0873</mods:nameIdentifier>
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<mods:affiliation>Department of Botany and Plant Ecology, Wroclaw University of Environmental and Life Sciences, pl. Grunwaldzki 24 a, PL- 50 - 363 Wroclaw, Poland</mods:affiliation>
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</mods:name>
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<mods:typeOfResource>text</mods:typeOfResource>
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<mods:relatedItem type="host">
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<mods:titleInfo>
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<mods:title>MycoKeys</mods:title>
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</mods:titleInfo>
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<mods:part>
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<mods:date>2021</mods:date>
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<mods:detail type="pubDate">
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<mods:number>2021-12-22</mods:number>
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</mods:detail>
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<mods:detail type="volume">
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<mods:number>85</mods:number>
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</mods:detail>
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<mods:extent unit="page">
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<mods:start>127</mods:start>
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<mods:end>160</mods:end>
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</mods:extent>
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<mods:location>
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<mods:url>http://dx.doi.org/10.3897/mycokeys.85.70552</mods:url>
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</mods:location>
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<mods:classification>journal article</mods:classification>
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<mods:identifier type="DOI">http://dx.doi.org/10.3897/mycokeys.85.70552</mods:identifier>
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<mods:identifier type="Pensoft-Pub">1314-4049-85-127</mods:identifier>
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<mods:identifier type="Pensoft-UUID">9BE6BB9F2C2850CD9A64958C2F3D777A</mods:identifier>
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<treatment ID-GBIF-Taxon="191723304" LSID="urn:lsid:plazi:treatment:ADC70C7B179AF60C75A120E01B22CEFA" httpUri="http://treatment.plazi.org/id/ADC70C7B179AF60C75A120E01B22CEFA" lastPageNumber="127" pageId="0" pageNumber="127">
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<subSubSection pageId="0" pageNumber="127" type="nomenclature">
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<paragraph pageId="0" pageNumber="127">
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<taxonomicName authority="(Nyl.) A. Thell" authorityName="(Nyl.) A. Thell" class="Lecanoromycetes" family="Parmeliaceae" genus="Melanelia" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Melanelia agnata" order="Lecanorales" pageId="0" pageNumber="127" phylum="Ascomycotina" rank="species" species="agnata">Melanelia agnata (Nyl.) A. Thell</taxonomicName>
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</paragraph>
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</subSubSection>
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<subSubSection pageId="0" pageNumber="127" type="reference_group">
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<paragraph pageId="0" pageNumber="127">
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<taxonomicName class="Lecanoromycetes" family="Parmeliaceae" genus="Platysma" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Platysma agnatum" order="Lecanorales" pageId="0" pageNumber="127" phylum="Ascomycota" rank="species" species="agnatum">Platysma agnatum</taxonomicName>
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Nova Hedwigia 60:416 (1995) ≡
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<taxonomicName class="Lecanoromycetes" family="Parmeliaceae" genus="Platysma" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Platysma agnatum" order="Lecanorales" pageId="0" pageNumber="127" phylum="Ascomycota" rank="species" species="agnatum">Platysma agnatum</taxonomicName>
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Nyl., Flora, Jena 60:562 (1877) ≡
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<taxonomicName class="Lecanoromycetes" family="Parmeliaceae" genus="Cetraria" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Cetraria agnata" order="Lecanorales" pageId="0" pageNumber="127" phylum="Ascomycota" rank="species" species="agnata">Cetraria agnata</taxonomicName>
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(Nyl.) Kristinsson, Lichenologist 6:144 (1974).
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</paragraph>
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</subSubSection>
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<subSubSection pageId="0" pageNumber="127" type="description">
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<paragraph pageId="0" pageNumber="127">Description.</paragraph>
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<paragraph pageId="0" pageNumber="127">
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<taxonomicName class="Lecanoromycetes" family="Parmeliaceae" kingdom="Fungi" lsidName="M. agnata" order="Lecanorales" pageId="0" pageNumber="127" phylum="Ascomycota" rank="species" species="agnata">
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<emphasis italics="true" pageId="0" pageNumber="127">M. agnata</emphasis>
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</taxonomicName>
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has foliose thallus with flat, smooth, 0.25-2 mm broad lobes which are thicker on the margins and rounded at the ends (
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<bibRefCitation DOI="https://doi.org/10.13158/heia.30.1.2017.272" author="Szczepanska, K" journalOrPublisher="Herzogia" pageId="0" pageNumber="127" pagination="272 - 288" refId="B65" refString="Szczepanska, K, Kossowska, M, 2017. Cetrariella commixta and the genus Melanelia (Parmeliaceae, Ascomycota) in Poland. Herzogia 30: 272 - 288, DOI: https://doi.org/10.13158/heia.30.1.2017.272" title="Cetrariella commixta and the genus Melanelia (Parmeliaceae, Ascomycota) in Poland." url="https://doi.org/10.13158/heia.30.1.2017.272" volume="30" year="2017">
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<normalizedToken originalValue="Szczepańska">Szczepanska</normalizedToken>
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and Kossowska 2017
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</bibRefCitation>
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). The upper surface is glossy, olive-brown to dark brown. The lower surface is pale brown to dark brown in the centre, with single, dark rhizines.
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<taxonomicName class="Lecanoromycetes" family="Parmeliaceae" kingdom="Fungi" lsidName="M. agnata" order="Lecanorales" pageId="0" pageNumber="127" phylum="Ascomycota" rank="species" species="agnata">
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<emphasis italics="true" pageId="0" pageNumber="127">M. agnata</emphasis>
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</taxonomicName>
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possess pseudocyphellae which are larger on the lobe margins and smaller, punctiform on the upper surface of the lobes. Pycnidia are mainly marginal to laminal, partially immersed and globose with hyaline bacilliform conidia (4.5-5.5
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<normalizedToken originalValue="×">x</normalizedToken>
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1
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<normalizedToken originalValue="µm">µm</normalizedToken>
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). Apothecia are not seen in examined material.
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</paragraph>
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</subSubSection>
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<subSubSection pageId="0" pageNumber="127" type="chemistry">
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<paragraph pageId="0" pageNumber="127">Chemistry.</paragraph>
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<paragraph pageId="0" pageNumber="127">No secondary metabolites were detected by TLC.</paragraph>
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</subSubSection>
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<subSubSection pageId="0" pageNumber="127" type="distribution">
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<paragraph pageId="0" pageNumber="127">Distribution.</paragraph>
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<paragraph pageId="0" pageNumber="127">
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<taxonomicName class="Lecanoromycetes" family="Parmeliaceae" kingdom="Fungi" lsidName="M. agnata" order="Lecanorales" pageId="0" pageNumber="127" phylum="Ascomycota" rank="species" species="agnata">
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<emphasis italics="true" pageId="0" pageNumber="127">M. agnata</emphasis>
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</taxonomicName>
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is a rare taxon occurring in arctic and boreal regions in North America and Europe, growing in open stands on siliceous and basalt rocks (
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<bibRefCitation DOI="https://doi.org/10.1111/j.1365-2699.2005.01268.x" author="Otte, V" journalOrPublisher="Journal of Biogeography" pageId="0" pageNumber="127" pagination="1221 - 1241" refId="B51" refString="Otte, V, Esslinger, TL, Litterski, B, 2005. Global distribution of the European species of the lichen genus Melanelia Essl. Journal of Biogeography 32: 1221 - 1241, DOI: https://doi.org/10.1111/j.1365-2699.2005.01268.x" title="Global distribution of the European species of the lichen genus Melanelia Essl." url="https://doi.org/10.1111/j.1365-2699.2005.01268.x" volume="32" year="2005">Otte et al. 2005</bibRefCitation>
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). Available molecular data concern samples collected only in North America (Greenland) and North Europe (Iceland, Norway).
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</paragraph>
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</subSubSection>
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<subSubSection pageId="0" pageNumber="127" type="haplotypes differentiation">
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<paragraph pageId="0" pageNumber="127">Haplotypes differentiation.</paragraph>
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<paragraph pageId="0" pageNumber="127">
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Six different haplotypes were identified in
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<taxonomicName class="Lecanoromycetes" family="Parmeliaceae" kingdom="Fungi" lsidName="M. agnata" order="Lecanorales" pageId="0" pageNumber="127" phylum="Ascomycota" rank="species" species="agnata">
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<emphasis italics="true" pageId="0" pageNumber="127">M. agnata</emphasis>
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</taxonomicName>
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(n = 10), of which two Polish specimens, collected in the Karpaty Mountains, have the same, not previously known, haplotype (Fig.
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<figureCitation captionStart="Figure 3" captionStartId="F3" captionText="Figure 3. Haplotype network, based on ITS rDNA sequences from specimens of Melanelia agnata. Newly-generated sequences are described with isolate numbers preceding the species names. Sequences downloaded from GenBank are described with their accession numbers. Mutational changes are presented as numbers in brackets near lines between haplotypes." figureDoi="10.3897/mycokeys.85.70552.figure3" httpUri="https://binary.pensoft.net/fig/626674" pageId="0" pageNumber="127">3</figureCitation>
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, Table
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<tableCitation captionStart="Table 2" captionStartId="T2" captionText="Table 2. List of haplotypes identified in this study and their geographical distribution. Nucleotide diversity for each species is also presented, and the newly generated sequences are in bold." httpUri="http://table.plazi.org/id/56412216170268C6D7BAC46F41BF8662" pageId="0" pageNumber="127" tableUuid="56412216170268C6D7BAC46F41BF8662">2</tableCitation>
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). It differs from other haplotypes in at least seven positions. However, the remaining specimens originate from Greenland, Iceland or Norway and no other samples from Central Europe have been sequenced until now. Four Icelandic specimens have the same haplotype, which is similar to the haplotype from Norwegian specimens. In contrast, Icelandic haplotypes differ from Greenlandic haplotypes in at least eight positions. Whether their genetic diversity supports conclusions from previous papers suggesting potentially unrecognised species lineages in the
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<taxonomicName class="Lecanoromycetes" family="Parmeliaceae" kingdom="Fungi" lsidName="M. agnata" order="Lecanorales" pageId="0" pageNumber="127" phylum="Ascomycota" rank="species" species="agnata">
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<emphasis italics="true" pageId="0" pageNumber="127">M. agnata</emphasis>
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</taxonomicName>
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genus (
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<bibRefCitation DOI="https://doi.org/10.1007/s13127-013-0147-1" author="Leavitt, SD" journalOrPublisher="Organisms Diversity & Evolution" pageId="0" pageNumber="127" pagination="11 - 20" refId="B38" refString="Leavitt, SD, Esslinger, TL, Hansen, ES, Divakar, PK, Crespo, A, Loomis, BF, Lumbsch, HT, 2014. DNA barcoding of brown Parmeliae (Parmeliaceae) species: a molecular approach for accurate specimen identification, emphasizing species in Greenland. Organisms Diversity & Evolution 14: 11 - 20, DOI: https://doi.org/10.1007/s13127-013-0147-1" title="DNA barcoding of brown Parmeliae (Parmeliaceae) species: a molecular approach for accurate specimen identification, emphasizing species in Greenland." url="https://doi.org/10.1007/s13127-013-0147-1" volume="14" year="2014">Leavitt et al. 2014</bibRefCitation>
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;
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<bibRefCitation DOI="https://doi.org/10.1371/journal.pone.0178012" author="Xu, M" journalOrPublisher="Graphis Scripta" pageId="0" pageNumber="127" refId="B72" refString="Xu, M, Heidmarsson, S, Thorsteinsdottir, M, Eiriksson, FF, Omarsdottir, S, Olafsdottir, ES, 2017. DNA barcoding and LC-MS metabolite profiling of the lichen-forming genus Melanelia: Specimen identification and discrimination focusing on Icelandic taxa. PLoS ONE 12(5): e0178012. https://doi.org/10.1371/journal.pone.0178012" title="DNA barcoding and LC-MS metabolite profiling of the lichen-forming genus Melanelia: Specimen identification and discrimination focusing on Icelandic taxa. PLoS ONE 12 (5): e 0178012." url="https://doi.org/10.1371/journal.pone.0178012" year="2017">Xu et al. 2017</bibRefCitation>
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) remains unresolved and should be further studied.
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</paragraph>
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<caption doi="10.3897/mycokeys.85.70552.figure3" httpUri="https://binary.pensoft.net/fig/626674" pageId="0" pageNumber="127" start="Figure 3" startId="F3">
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<paragraph pageId="0" pageNumber="127">
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<emphasis bold="true" pageId="0" pageNumber="127">Figure 3.</emphasis>
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Haplotype network, based on ITS rDNA sequences from specimens of
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<taxonomicName class="Lecanoromycetes" family="Parmeliaceae" genus="Melanelia" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Melanelia agnata" order="Lecanorales" pageId="0" pageNumber="127" phylum="Ascomycotina" rank="species" species="agnata">
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<emphasis italics="true" pageId="0" pageNumber="127">Melanelia agnata</emphasis>
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</taxonomicName>
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. Newly-generated sequences are described with isolate numbers preceding the species names. Sequences downloaded from GenBank are described with their accession numbers. Mutational changes are presented as numbers in brackets near lines between haplotypes.
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</paragraph>
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</caption>
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</subSubSection>
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</treatment>
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</document> |