165 lines
15 KiB
XML
165 lines
15 KiB
XML
<document id="9B6B4075F583F967B71F66223EB709FA" ID-DOI="10.1099/ijsem.0.003808" ID-GBIF-Dataset="e70e39cf-ffb6-4178-989c-6a42a3c0c3bf" ID-ISSN="1466-5034" ID-Zenodo-Dep="3745026" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="existingObjects,plazi" IM.taxonomicNames_approvedBy="felipe" checkinTime="1586370000602" checkinUser="felipe" docAuthor="Saygin, Hayrettin, Nouioui, Imen, Ay, Hilal, Guven, Kiymet, Cetin, Demet, Klenk, Hans-Peter, Goodfellow, Michael & Sahin, Nevzat" docDate="2020" docId="03F78416222DFFA43F53FAEBFAF1FAEB" docLanguage="en" docName="IntJouSysEvoMicro.70.636-647.pdf.imf" docOrigin="International Journal of Systematic and Evolutionary Microbiology 70 (1)" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.3:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="3" docTitle="Nonomuraea diastatica Saygin, Nouioui, Ay, Guven, Cetin, Klenk, Goodfellow & Sahin, 2020, SP. NOV." docType="treatment" docVersion="9" lastPageNumber="644" masterDocId="FFCEFC6E2225FFAC3F2AFFEDFF84FF86" masterDocTitle="Polyphasic classification of Nonomuraea strains isolated from the Karakum Desert and description of Nonomuraea deserti sp. nov., Nonomuraea diastatica sp. nov., Nonomuraea longispora sp. nov. and Nonomuraea mesophila sp. nov." masterLastPageNumber="647" masterPageNumber="636" pageNumber="644" updateTime="1698736564375" updateUser="plazi" zenodo-license-document="CC-BY-4.0">
|
||
<mods:mods id="2B552475C7FE91929039B361ECC30CBF" xmlns:mods="http://www.loc.gov/mods/v3">
|
||
<mods:titleInfo id="70E14516A24E25C4178FF89157326381">
|
||
<mods:title id="84A37579728BE24D6DF28DBCF90F4CE3">Polyphasic classification of Nonomuraea strains isolated from the Karakum Desert and description of Nonomuraea deserti sp. nov., Nonomuraea diastatica sp. nov., Nonomuraea longispora sp. nov. and Nonomuraea mesophila sp. nov.</mods:title>
|
||
</mods:titleInfo>
|
||
<mods:name id="45A0A426701B639153E03BE08F2766C2" type="personal">
|
||
<mods:role id="21A6B5747BAF932C7A3AF9448BE972A6">
|
||
<mods:roleTerm id="8A5F670D166F402E745A7CF0F256B10B">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="9C1D102A987393EDF4FCD50A85A059FD">Saygin, Hayrettin</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="6E80247193A6810AE6D42218945939EF" type="personal">
|
||
<mods:role id="A25A798EFDA78EB880D2176CE749C1D3">
|
||
<mods:roleTerm id="038371EFD045EE56AD63E73A853EE9C2">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="808959484DA89DF1FB33CF1D0E741DD2">Nouioui, Imen</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="4D5A71B4FA5C763ED54190056B7B0CDF" type="personal">
|
||
<mods:role id="C1646AA5ACAA6719EF4BBAD86C9E9963">
|
||
<mods:roleTerm id="64C03CFCC608D1AAAADDE14CC0385CAB">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="AB64B1E7C89BE3AAB88B68AA578824F8">Ay, Hilal</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="107C2C76FFF7137C6027F293EAE49763" type="personal">
|
||
<mods:role id="9F59A7F9E1A160FDA9F00DF1CF5AA697">
|
||
<mods:roleTerm id="7A9B3F8D1F10CB571A1328B1B929DFA9">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="9D84FD88201E802FCEFB88EE579CA6AD">Guven, Kiymet</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="E69D238EC229A4EB9A446AA1F02D5CD4" type="personal">
|
||
<mods:role id="76199684C5573F0D1B583D0B40021221">
|
||
<mods:roleTerm id="8D979BBC46CBACBDF9F8616CF427D50E">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="6A3D9EFB03A353071E48BAB4FA0FEAAE">Cetin, Demet</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="05474B3FE618A37D2B20D442C34C3A25" type="personal">
|
||
<mods:role id="4277DA628B325F208EAD63E75886FE7D">
|
||
<mods:roleTerm id="D71E21FF04B708DA34AE71B2C10F6231">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="1F908E3D186FCDE544D57E55D5B70007">Klenk, Hans-Peter</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="2C40ED5DA2DBC6DC5F1797030EB064F4" type="personal">
|
||
<mods:role id="8AEAA92E90EA586C76F764353D9B973B">
|
||
<mods:roleTerm id="B36ECDD1195DA6C3C60DE6B46E2556FE">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="8B4F07617BDD83504D63C4B858C044E3">Goodfellow, Michael</mods:namePart>
|
||
</mods:name>
|
||
<mods:name id="25F5926F90ECF8640464BF25EC565B9C" type="personal">
|
||
<mods:role id="C32DF568E3469AB92368251975163157">
|
||
<mods:roleTerm id="107E3B4FE04C1512EF33E25ACFAA4684">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="DD4B526CEA91F65D09E6135BE9803F64">Sahin, Nevzat</mods:namePart>
|
||
</mods:name>
|
||
<mods:typeOfResource id="C4E423D2BEABA70B9528DFE887E94648">text</mods:typeOfResource>
|
||
<mods:relatedItem id="CCF1F2D3A7D78E9460A2BBA7F145FC89" type="host">
|
||
<mods:titleInfo id="99EC95DB7710DE5BF70A12089C77508D">
|
||
<mods:title id="A680243A0CB42B5D9B44D14D7C53476C">International Journal of Systematic and Evolutionary Microbiology</mods:title>
|
||
</mods:titleInfo>
|
||
<mods:part id="DE05C6D889D2FC5B2E773EC7D5D84905">
|
||
<mods:date id="158473DCEBAEB67E8707FC6BD14CC597">2020</mods:date>
|
||
<mods:detail id="21E77FC0E92FDE9BF7D12E611F971C2E" type="pubDate">
|
||
<mods:number id="B539185D672F798FA6283D351E788178">2020-02-03</mods:number>
|
||
</mods:detail>
|
||
<mods:detail id="C036F0EBBDEF7262D461C7BCDF7146D4" type="volume">
|
||
<mods:number id="D07C9FF65719512175FDF5E6567A49A7">70</mods:number>
|
||
</mods:detail>
|
||
<mods:detail id="C71472D2E12139AA39AC8407BEE18357" type="issue">
|
||
<mods:number id="4E3DC40571E61DD3B4C88C50F5E7AA6D">1</mods:number>
|
||
</mods:detail>
|
||
<mods:extent id="A8A234B177E44AA182FD4A8223FA95B9" unit="page">
|
||
<mods:start id="CF5D8302465FFC80FC3AD4148EA69A91">636</mods:start>
|
||
<mods:end id="577F1A105E4C72B19A26055FD6936F68">647</mods:end>
|
||
</mods:extent>
|
||
</mods:part>
|
||
</mods:relatedItem>
|
||
<mods:classification id="42FDE1DA52ED0E5D45AEB279362D3469">journal article</mods:classification>
|
||
<mods:identifier id="B42F482D4E5966038C7080D78ECE23D2" type="DOI">10.1099/ijsem.0.003808</mods:identifier>
|
||
<mods:identifier id="764AF5ABC773DA2B2D11ACED33891430" type="GBIF-Dataset">e70e39cf-ffb6-4178-989c-6a42a3c0c3bf</mods:identifier>
|
||
<mods:identifier id="70812449EFFD249680C2655169EA66BF" type="ISSN">1466-5034</mods:identifier>
|
||
<mods:identifier id="64B616E5BEC78F63078553258A45349A" type="Zenodo-Dep">3745026</mods:identifier>
|
||
</mods:mods>
|
||
<treatment id="03F78416222DFFA43F53FAEBFAF1FAEB" ID-DOI="http://doi.org/10.5281/zenodo.3809599" ID-GBIF-Taxon="163540094" ID-Zenodo-Dep="3809599" LSID="urn:lsid:plazi:treatment:03F78416222DFFA43F53FAEBFAF1FAEB" httpUri="http://treatment.plazi.org/id/03F78416222DFFA43F53FAEBFAF1FAEB" lastPageNumber="644" pageId="8" pageNumber="644">
|
||
<subSubSection id="C344668B222DFFA43F53FAEBFF69FACE" pageId="8" pageNumber="644" type="nomenclature">
|
||
<paragraph id="8BE13500222DFFA43F53FAEBFF69FACE" blockId="8.[121,745,1286,1352]" pageId="8" pageNumber="644">
|
||
<heading id="D0A9826C222DFFA43F53FAEBFF69FACE" allCaps="true" bold="true" centered="true" fontSize="12" level="2" pageId="8" pageNumber="644" reason="3">
|
||
<emphasis id="B92AE912222DFFA43F53FAEBFF69FACE" bold="true" pageId="8" pageNumber="644">
|
||
DESCRIPTION OF
|
||
<taxonomicName id="4C5E4E83222DFFA43E58FAEBFD6DFAA5" box="[370,745,1286,1315]" class="Actinobacteridae" family="Streptosporangiaceae" genus="Nonomuraea" higherTaxonomySource="CoL" kingdom="Bacteria" order="Actinomycetales" pageId="8" pageNumber="644" phylum="Actinobacteria" rank="species" species="diastatica" status="sp. nov.">
|
||
<emphasis id="B92AE912222DFFA43E58FAEBFD6DFAA5" bold="true" box="[370,745,1286,1315]" italics="true" pageId="8" pageNumber="644">NONOMURAEA DIASTATICA</emphasis>
|
||
</taxonomicName>
|
||
<taxonomicNameLabel id="A2195469222DFFA43F53FAC6FF69FACE" box="[121,237,1323,1352]" pageId="8" pageNumber="644">SP. NOV.</taxonomicNameLabel>
|
||
</emphasis>
|
||
</heading>
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="C344668B222DFFA43F53FAB5FC23FB23" pageId="8" pageNumber="644" type="description">
|
||
<paragraph id="8BE13500222DFFA43F53FAB5FD02FA2B" blockId="8.[121,760,1365,1453]" pageId="8" pageNumber="644">
|
||
<taxonomicName id="4C5E4E83222DFFA43F53FAB5FEEEFAE9" box="[121,362,1367,1391]" class="Actinobacteridae" family="Streptosporangiaceae" genus="Nonomuraea" higherTaxonomySource="CoL" kingdom="Bacteria" order="Actinomycetales" pageId="8" pageNumber="644" phylum="Actinobacteria" rank="species" species="diastatica">
|
||
<emphasis id="B92AE912222DFFA43F53FAB5FEEEFAE9" box="[121,362,1367,1391]" italics="true" pageId="8" pageNumber="644">Nonomuraea diastatica</emphasis>
|
||
</taxonomicName>
|
||
(di.a.sta
|
||
<emphasis id="B92AE912222DFFA43EEEFAB8FE4EFAE9" bold="true" box="[452,458,1365,1391]" italics="true" pageId="8" pageNumber="644">′</emphasis>
|
||
ti.ca. N.L. fem. adj.
|
||
<taxonomicName id="4C5E4E83222DFFA43DB9FABAFD73FAE9" box="[659,759,1367,1391]" class="Actinobacteridae" family="Streptosporangiaceae" genus="Nonomuraea" higherTaxonomySource="CoL" kingdom="Bacteria" order="Actinomycetales" pageId="8" pageNumber="644" phylum="Actinobacteria" rank="species" species="diastatica">
|
||
<emphasis id="B92AE912222DFFA43DB9FABAFD73FAE9" box="[659,759,1367,1391]" italics="true" pageId="8" pageNumber="644">diastatica</emphasis>
|
||
</taxonomicName>
|
||
from eng. n.
|
||
<emphasis id="B92AE912222DFFA43E20FA9BFEDAFA08" box="[266,350,1398,1422]" italics="true" pageId="8" pageNumber="644">diastase</emphasis>
|
||
, a starch-degrading enzyme, derived from Gr. fem. n.
|
||
<emphasis id="B92AE912222DFFA43E01FA78FE07FA2B" box="[299,387,1429,1453]" italics="true" pageId="8" pageNumber="644">diastasis</emphasis>
|
||
a parting, a separation).
|
||
</paragraph>
|
||
<paragraph id="8BE13500222DFFA43F53FA2FFC23FB23" blockId="8.[121,761,1474,1959]" lastBlockId="8.[828,1467,613,1189]" pageId="8" pageNumber="644">
|
||
Aerobic, Gram-stain-positive, non-motile actinobacter’um that forms extensively branched substrate and aerial mycelia. Aerial hyphae bear clusters of oval spores. Good growth occurs on ISP 2, modified Bennett’s, Czapek’s, tryptic soy and nutrient agar, moderate growth on ISP 4, 5 and 7 agar and weak growth on ISP 6 agar substrate mycelia may be brown or cream, not produce diffusible or melanoid pigments. Grows from 28–37 °C (optimum, 28 °C), from pH 6.0–8.0 (optimum, pH 7.0) and in the presence of up to 4 % (w/v) NaCl. Hydrolyses aesculin and arbutin, reduces nitrate but does not produce H
|
||
<subScript id="17DA3745222DFFA43E7FF8E9FED9F894" attach="both" box="[341,349,1796,1810]" fontSize="6" pageId="8" pageNumber="644">2</subScript>
|
||
S and does not hydrolyse allantoin or urea. Gelatin, hypoxanthine, starch and xylan are degraded, but not adenine, casein, chitin, guanine, Tweens 40 or 80 or xanthine. Cellobiose, dextran, D-glucose, D-mannitol, raffinose and sodium succinate are utilized as sole carbon and energy sources, but not adonitol, D-arabinose, L-arabinose, dextrin, D-fructose, D-galactose, L-glutamine, myo-inositol, inulin, lactose, maltose, D-mannose, melezitose, melibiose, L-rhamnose, D-sorbitol, L-sorbose, sucrose, xylitol or D-xylose. L-Alanine, L-arginine, L-asparagine, L-cysteine, glycine, L-hydroxyproline, α-iso-leucine, L-methionine, L-phenylalanine, L-proline, L-serine, L-tyrosine and L-valine are used as sole nitrogen sources, but not l-histidine. The predominant menaquinones are MK-9(H
|
||
<subScript id="17DA3745222DFFA43BD6FCA6FA87FCDF" attach="left" box="[1276,1283,843,857]" fontSize="6" pageId="8" pageNumber="644">4</subScript>
|
||
) and MK-9(H
|
||
<subScript id="17DA3745222DFFA43A8EFCA6FA2FFCDF" attach="left" box="[1444,1451,843,857]" fontSize="6" pageId="8" pageNumber="644">6</subScript>
|
||
). The polar lipid profile includes diphosphatidylglycerol, phosphatidylmonomethylethanolamine, phosphatidylethanolamine, hydroxy-phosphatidylethanolamine, dihydroxy-phosphatidylethanolamine, phosphatidylglycerol, phosphatidylinositol, three unidentified glycophospholipids, an unidentified phospholipid and three unidentified lipids. Whole-cell hydrolysates contain
|
||
<emphasis id="B92AE912222DFFA43BE0FBF9FA84FBAD" box="[1226,1280,1044,1067]" italics="true" pageId="8" pageNumber="644">meso</emphasis>
|
||
-A
|
||
<subScript id="17DA3745222DFFA43A36FBCFFAA0FBB6" attach="both" box="[1308,1316,1058,1072]" fontSize="6" pageId="8" pageNumber="644">2</subScript>
|
||
pm, glucose, mannose, madurose, ribose and galactose. The major fatty acids are C
|
||
<subScript id="17DA3745222DFFA43C99FBB2FC52FBEB" attach="left" box="[947,982,1119,1134]" fontSize="6" pageId="8" pageNumber="644">17: 0</subScript>
|
||
10-methyl, iso-C
|
||
<subScript id="17DA3745222DFFA43BA1FBB2FB21FBEB" attach="left" box="[1163,1189,1119,1133]" fontSize="6" pageId="8" pageNumber="644">16:0</subScript>
|
||
and C
|
||
<subScript id="17DA3745222DFFA43BC4FBB2FA8CFBEB" attach="left" box="[1262,1288,1119,1133]" fontSize="6" pageId="8" pageNumber="644">16:0</subScript>
|
||
. The DNA G+C content of strain KC712
|
||
<superScript id="7C2B9848222DFFA43B17FB80FBC3FBFD" attach="left" box="[1085,1095,1133,1147]" fontSize="6" pageId="8" pageNumber="644">T</superScript>
|
||
is 70.3 mol% and the genome size 10.6 Mbp.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="C344668B222DFFA43C16FB56FAF1FAEB" pageId="8" pageNumber="644" type="materials_examined">
|
||
<paragraph id="8BE13500222DFFA43C16FB56FAF1FAEB" blockId="8.[828,1467,1209,1389]" pageId="8" pageNumber="644">
|
||
<materialsCitation id="3B363F5D222DFFA43C16FB56FAF5FAEB" ID-GBIF-Occurrence="2597464797" collectingDate="25-10-29" collectionCode="T, DSM, EMBL, DDBJ, MG, SMKP" country="Turkmenistan" location="Karakum Desert" municipality="The GenBank" pageId="8" pageNumber="644" specimenCode="KC712T" specimenCount="1" typeStatus="type">
|
||
The
|
||
<typeStatus id="54E58BA2222DFFA43C57FB51FC28FB52" box="[893,940,1212,1236]" pageId="8" pageNumber="644">type</typeStatus>
|
||
strain,
|
||
<specimenCode id="DBF89D7B222DFFA43B0AFB56FBF1FB41" box="[1056,1141,1209,1235]" pageId="8" pageNumber="644">
|
||
KC712
|
||
<superScript id="7C2B9848222DFFA43B41FB54FBF1FB41" attach="left" box="[1131,1141,1209,1223]" fontSize="6" pageId="8" pageNumber="644">T</superScript>
|
||
</specimenCode>
|
||
(=CGMCC 4.7334
|
||
<superScript id="7C2B9848222DFFA43A42FB54FAF6FB41" attach="none" box="[1384,1394,1209,1223]" fontSize="6" pageId="8" pageNumber="644">T</superScript>
|
||
=DSM 102925
|
||
<superScript id="7C2B9848222DFFA43CA0FB35FC10FB60" attach="none" box="[906,916,1240,1254]" fontSize="6" pageId="8" pageNumber="644">T</superScript>
|
||
=KCTC 39776
|
||
<superScript id="7C2B9848222DFFA43B10FB35FBC0FB60" attach="none" box="[1082,1092,1240,1254]" fontSize="6" pageId="8" pageNumber="644">T</superScript>
|
||
), was isolated from desert soil sample collected from the
|
||
<location id="8E8163DB222DFFA43B77FB14FA96FA96" LSID="urn:lsid:plazi:treatment:03F78416222DFFA43F53FAEBFAF1FAEB:8E8163DB222DFFA43B77FB14FA96FA96" box="[1117,1298,1273,1297]" country="Turkmenistan" municipality="The GenBank" name="Karakum Desert" pageId="8" pageNumber="644">Karakum Desert</location>
|
||
,
|
||
<collectingCountry id="F3497590222DFFA43A34FB14FA33FA97" box="[1310,1463,1273,1297]" name="Turkmenistan" pageId="8" pageNumber="644">Turkmenistan</collectingCountry>
|
||
. The GenBank/EMBL/DDBJ accession number for the 16S rRNA gene sequence of strain KC712
|
||
<superScript id="7C2B9848222DFFA43B97FAD9FB42FAC4" attach="left" box="[1213,1222,1332,1346]" fontSize="6" pageId="8" pageNumber="644">T</superScript>
|
||
is
|
||
<accessionNumber id="940DA8E3222DFFA43BCBFADBFAD3FAC8" box="[1249,1367,1334,1358]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/MG770679" pageId="8" pageNumber="644">MG770679</accessionNumber>
|
||
and draħ genome sequence accession number SMKP00000000
|
||
</materialsCitation>
|
||
.
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |