199 lines
19 KiB
XML
199 lines
19 KiB
XML
<document ID-DOI="http://dx.doi.org/10.3897/mycokeys.65.47704" ID-GBIF-Dataset="00685a01-0785-47ec-aa0b-77c991ee4b08" ID-PMC="PMC7078340" ID-Pensoft-Pub="1314-4049-65-49" ID-Pensoft-UUID="DED2BF86E6FD56179642F7119604CEB9" ID-PubMed="32206025" ModsDocID="1314-4049-65-49" checkinTime="1583860301782" checkinUser="pensoft" docAuthor="Hou, Lingwei, Hernandez-Restrepo, Margarita, Groenewald, Johannes Zacharias, Cai, Lei & Crous, Pedro W." docDate="2020" docId="F8B7455D5AFD5C69B5715DDF3CE976C5" docLanguage="en" docName="MycoKeys 65: 49-99" docOrigin="MycoKeys 65" docSource="http://dx.doi.org/10.3897/mycokeys.65.47704" docTitle="Paraboeremia truiniorum Hern. - Restr., L. W. Hou, L. Cai & Crous 2020, sp. nov." docType="treatment" docVersion="5" id="DED2BF86E6FD56179642F7119604CEB9" lastPageNumber="49" masterDocId="DED2BF86E6FD56179642F7119604CEB9" masterDocTitle="Citizen science project reveals high diversity in Didymellaceae (Pleosporales, Dothideomycetes)" masterLastPageNumber="99" masterPageNumber="49" pageNumber="49" updateTime="1732488328564" updateUser="ExternalLinkService">
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<mods:titleInfo id="ED180884823C87398E84F89328E85EB2">
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<mods:title id="7F97D9F52694DC57333E645A8E034C1D">Citizen science project reveals high diversity in Didymellaceae (Pleosporales, Dothideomycetes)</mods:title>
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<mods:namePart id="D1B8AB1C9011115102BC1B58E269186C">Hou, Lingwei</mods:namePart>
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<mods:roleTerm id="BC2E18CCD3C37F67D78CA77DB5075E6D">Author</mods:roleTerm>
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<mods:namePart id="9B824937AC59A81AEB066BB05CB3F61F">Hernandez-Restrepo, Margarita</mods:namePart>
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<mods:name id="8563065B24B38399A9406B6D13AAF718" type="personal">
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<mods:namePart id="EDCF607B74256E9E41DB50B6CC0F4B53">Groenewald, Johannes Zacharias</mods:namePart>
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<mods:name id="493B69079DCEF6A7967BE2762D662707" type="personal">
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<mods:namePart id="533E67A61E2F35EC2D35D1433DD52277">Cai, Lei</mods:namePart>
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<mods:name id="AA6D6999C485C1432F346597A44B5A64" type="personal">
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<mods:roleTerm id="1F9781D45F3E470DBD9B147341C74D43">Author</mods:roleTerm>
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<mods:namePart id="7E4DE9AA388DACEAE079FA0A0B0BB6A5">Crous, Pedro W.</mods:namePart>
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<mods:title id="6861EC5B1B1820135AB0C4DACEE634FE">MycoKeys</mods:title>
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<mods:date id="6CD545BD6116B3DC657E97DF84F5461C">2020</mods:date>
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<mods:detail id="385F76D70D2782F78DEDE27312C20B0D" type="volume">
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<mods:number id="61DFF41432CB9E3225B26CEAC64D3301">65</mods:number>
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<mods:start id="84F0772B1BBB9C00235F62748F559FE9">49</mods:start>
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<mods:url id="A9373361B97128D83C29153D9E3A864D">http://dx.doi.org/10.3897/mycokeys.65.47704</mods:url>
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<mods:classification id="36E36C4E480F5B00A64DA8E0B7992C26">journal article</mods:classification>
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<mods:identifier id="2E7DB17EFB9293078DD041C4B10C98A6" type="DOI">http://dx.doi.org/10.3897/mycokeys.65.47704</mods:identifier>
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<mods:identifier id="6F06FDB7D294615B0DBF7D7187DCC6FD" type="Pensoft-Pub">1314-4049-65-49</mods:identifier>
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<treatment id="F8B7455D5AFD5C69B5715DDF3CE976C5" ID-GBIF-Taxon="162481730" LSID="urn:lsid:plazi:treatment:F8B7455D5AFD5C69B5715DDF3CE976C5" httpUri="http://treatment.plazi.org/id/F8B7455D5AFD5C69B5715DDF3CE976C5" lastPageNumber="49" pageId="0" pageNumber="49" scope_class="Dothideomycetes" scope_family="Didymellaceae" scope_order="Pleosporales">
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<subSubSection id="C13B413064D92A3D991045FF84B14E6F" pageId="0" pageNumber="49" type="nomenclature">
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<paragraph id="50DEAA77A8FE1FDD32B98960EA33180E" pageId="0" pageNumber="49">
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<taxonomicName id="8A3A4BA296634AD42F7D0DA0EA5A3A26" ID-CoL="9ZCW3" LSID="F8B7455D-5AFD-5C69-B571-5DDF3CE976C5" authority="Hern. - Restr., L. W. Hou, L. Cai & Crous" authorityName="Hern. - Restr., L. W. Hou, L. Cai & Crous" authorityYear="2020" class="Dothideomycetes" family="Didymellaceae" genus="Paraboeremia" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Paraboeremia truiniorum" order="Pleosporales" pageId="0" pageNumber="49" phylum="Ascomycota" rank="species" species="truiniorum" status="sp. nov.">Paraboeremia truiniorum Hern.-Restr., L. W. Hou, L. Cai & Crous</taxonomicName>
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<taxonomicNameLabel id="C77D2578B8CD3BE5AD617131371C9B60" pageId="0" pageNumber="49">sp. nov.</taxonomicNameLabel>
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<figureCitation id="D3757461F7555C79F67B287A77B8EC8F" captionStart="Figure 8" captionStartId="F8" captionText="Figure 8. Paraboeremia truiniorum (CBS 144952). A, B Colony on OA (front and reverse) C, D colony on MEA (front and reverse) E, F colony on PDA (front and reverse) G pycnidia forming on OA H pycnidium I section of pycnidium J section of pycnidial wall K-N conidiogenous cells O conidia. Scale bars: 20 μm (H); 50 μm (I); 5 μm (J-O)." figureDoi="10.3897/mycokeys.65.47704.figure8" httpUri="https://binary.pensoft.net/fig/388211" pageId="0" pageNumber="49">Figure 8</figureCitation>
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</paragraph>
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</subSubSection>
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<subSubSection id="B1D245CEA057396B3211755E57CED7B5" pageId="0" pageNumber="49" type="etymology">
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<paragraph id="15EC9148AF7D21BECFD4C2720226584F" pageId="0" pageNumber="49">Etymology.</paragraph>
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<paragraph id="F8DC31395B31376D54FE5EB8FBC80973" pageId="0" pageNumber="49">
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<taxonomicName id="1C524382F65B4657739AEE8A034D837A" authorityName="Hern. - Restr., L. W. Hou, L. Cai & Crous" authorityYear="2020" class="Dothideomycetes" family="Didymellaceae" genus="Paraboeremia" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="truiniorum" order="Pleosporales" pageId="0" pageNumber="49" phylum="Ascomycota" rank="species" species="truiniorum">
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<emphasis id="0ACC5D04187E2E32DAA18AF12DCC4FD1" italics="true" pageId="0" pageNumber="49">truiniorum</emphasis>
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</taxonomicName>
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refers to Cuno & Tygo Truin who collected the soil sample from which the ex-type strain was isolated.
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</paragraph>
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</subSubSection>
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<subSubSection id="41633FDE8D8E61B3750478197CE4D2C3" pageId="0" pageNumber="49" type="typus">
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<paragraph id="F23B45E4B9EB9068BF43A9A45632535B" pageId="0" pageNumber="49">Typus.</paragraph>
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<paragraph id="538E0B4C277A3F4F6F7B1FD007F9847C" pageId="0" pageNumber="49">
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The Netherlands. Gelderland province, Barneveld, Voorthuizen, isolated from garden soil, Mar. 2017, C. Truin & T. Truin (
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<emphasis id="76E12B671F0F02A28EE4F81DAE4B04B0" bold="true" italics="true" pageId="0" pageNumber="49">holotype</emphasis>
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designated here CBS H-24108, living ex-type culture CBS 144952 = JW 47002).
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</paragraph>
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<paragraph id="F9AE18F0A315C04522E3AC4C1A330E2A" pageId="0" pageNumber="49">
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<emphasis id="0615769CE991004961F4A27CA66BB35B" italics="true" pageId="0" pageNumber="49">Conidiomata</emphasis>
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pycnidial, superficial, scattered or aggregated, most solitary, globose or subglobose, confluent and irregularly-shaped with age, pale brown, thick-walled, covered with abundant mycelial outgrowths, 160-420
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<normalizedToken id="6BBF5D3D3F05C3BD5A37AA65C41C4DBA" originalValue="×">x</normalizedToken>
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135-430
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<normalizedToken id="1BEAEA3773DF98850EAFACC2A4D33DFC" originalValue="μm">μm</normalizedToken>
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; 1-papillate or non-papillate ostioles, sometimes elongated to a short neck; pycnidial wall pseudoparenchymatous, 7-11 layers, 40-70
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<normalizedToken id="BF5AD57C79D4A1AF6F846CAA6FD674F7" originalValue="μm">μm</normalizedToken>
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thick, outer layers composed of brown, flattened polygonal cells of 22-45.5
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<normalizedToken id="49A55A9BFEADFD4A2C4B3BFF72B2E2CF" originalValue="μm">μm</normalizedToken>
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diam.
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<emphasis id="1DCC7D581DEFFD9BB9757EA7DB993F23" italics="true" pageId="0" pageNumber="49">Conidiogenous cells</emphasis>
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phialidic, hyaline, smooth, globose, subglobose, ampulliform or doliiform, 4.5-8.5
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<normalizedToken id="71019C3520B21C1109728D6785912832" originalValue="×">x</normalizedToken>
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4-7
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<normalizedToken id="8F0D67881A8724DB13CA4AAEED9D3F34" originalValue="μm">μm</normalizedToken>
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.
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<emphasis id="A122D3211E55D22D9141E4FF3C90DA23" italics="true" pageId="0" pageNumber="49">Conidia</emphasis>
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ellipsoidal to oblong, thin- and smooth-walled, hyaline, aseptate, 3.5-5
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<normalizedToken id="5F543736DEBD8113D7A64AD3ABFD6C1C" originalValue="×">x</normalizedToken>
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2-3
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<normalizedToken id="409C1D565EB035963851BF10C5B8AD9F" originalValue="μm">μm</normalizedToken>
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, with (1-)2 large guttules.
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<taxonomicName id="FCA7C1063AA4935D0827D14348F0D45C" genus="Conidial" lsidName="Conidial matrix" pageId="0" pageNumber="49" rank="species" species="matrix">
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<emphasis id="CDA55EC1CC931E067BE14D44581CA741" italics="true" pageId="0" pageNumber="49">Conidial matrix</emphasis>
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</taxonomicName>
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whitish.
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</paragraph>
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</subSubSection>
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<subSubSection id="559066E83709EA9C826EF500BED00B6E" pageId="0" pageNumber="49" type="description">
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<paragraph id="C9D4A8D66B0440A96F501FF5C6538361" pageId="0" pageNumber="49">Culture characteristics.</paragraph>
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<paragraph id="96AEB8B497FE285A00C0F9A7956B82F4" pageId="0" pageNumber="49">Colonies after 7 d at 25 °C, on OA reaching 70-75 mm diam, aerial mycelium floccose, vinaceous buff to hazel, margin regular; reverse buff to olivaceous. On MEA reaching 65-70 mm diam, aerial mycelium felty, whitish, pale mouse grey toward periphery, margin regular; reverse dark brick to dark brown, with pale brown edge. On PDA reaching 75-80 mm diam, aerial mycelium felty, olivaceous buff to pale mouse grey, olivaceous toward periphery, margin irregular; reverse mouse grey, olivaceous toward periphery. NaOH spot test negative on OA.</paragraph>
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</subSubSection>
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<subSubSection id="F394759CF1B625BE90D46CA388E72F98" pageId="0" pageNumber="49" type="materials_examined">
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<paragraph id="E72801437F117E4DFF8D767A764FAC0A" pageId="0" pageNumber="49">Additional specimens examined.</paragraph>
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<paragraph id="4E9540A0847A372EE902342FD1A648F5" pageId="0" pageNumber="49">The Netherlands, Gelderland province, Culemborg, isolated from garden soil, Mar. 2017, R. Fuld, JW 182014; The Netherlands. South Holland province, Alphen aan den Rijn, isolated from garden soil, Mar. 2017, K. Boutwell, CBS 144961 = JW 203021; The Netherlands. South Holland province, Gorinchem, isolated from garden soil, Mar. 2017, L. van Rosmalen, JW 270002; The Netherlands. Utrecht province, Utrecht, isolated from garden soil, Mar. 2017, L. van Rijnberk, JW 147025; The Netherlands. Utrecht province, Woerden, isolated from garden soil, Mar. 2017, L. Borsboom, JW 192003.</paragraph>
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</subSubSection>
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<subSubSection id="D42E426FF69A1294CA7CB96F75525EF7" pageId="0" pageNumber="49" type="notes">
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<paragraph id="EC09226DD8D29C5E80FFA46C7C348250" pageId="0" pageNumber="49">Notes.</paragraph>
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<paragraph id="2EC9484EAE237856A107ECA7D540C6BF" pageId="0" pageNumber="49">
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Based on the phylogenetic analyses,
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<taxonomicName id="1DFDCF740548E5DAD060561DA144C3E4" lsidName="P. truiniorum" pageId="0" pageNumber="49" rank="species" species="truiniorum">
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<emphasis id="93E2F1D28E734EB8A45F3F0D170D5847" italics="true" pageId="0" pageNumber="49">P. truiniorum</emphasis>
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</taxonomicName>
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is represented by six isolates, forming a distinct lineage (Figure
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<figureCitation id="795230462F2662BB6C5217DB8588762F" captionStart="Figure 1" captionStartId="F1" captionText="Figure 1. Phylogenetic tree generated from the maximum-likelihood analysis based on the combined ITS, LSU, tub 2 and rpb 2 sequence alignment of Didymellaceae members. The RAxML bootstrap support values (BS), Bayesian posterior probabilities (PP), and parsimony bootstrap support values (PBS) are given at the nodes (BS / PP / PBS). BS and PBS values represent parsimony bootstrap support values> 50 %. Full supported branches are indicated in bold. The scale bar represents the expected number of changes per site. Ex-type strains are represented in bold. Strains obtained in the current study are printed in green; among them, whilst strains that represent new taxa are printed in red. Some of the basal branches were shortened to facilitate layout (the fraction in round parentheses refers to the presented length compared to the actual length of the branch). The tree was rooted to Coniothyrium palmarum CBS 400.71 and Leptosphaeria doliolum CBS 505.75." figureDoi="10.3897/mycokeys.65.47704.figure1" httpUri="https://binary.pensoft.net/fig/388204" pageId="0" pageNumber="49">1</figureCitation>
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).
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<taxonomicName id="25391FF524D6D9301C7F0E216803B91B" authorityName="Hern. - Restr., L. W. Hou, L. Cai & Crous" authorityYear="2020" class="Dothideomycetes" family="Didymellaceae" genus="Paraboeremia" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Paraboeremia truiniorum" order="Pleosporales" pageId="0" pageNumber="49" phylum="Ascomycota" rank="species" species="truiniorum">
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<emphasis id="D107FDB404F810DE5EC8C1026DB6BF15" italics="true" pageId="0" pageNumber="49">Paraboeremia truiniorum</emphasis>
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</taxonomicName>
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is characterised by the dense mycelial outgrowths on its pycnidia. Both
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<taxonomicName id="15B469C33CE6469EA3BFA798D0C17674" lsidName="P. truiniorum" pageId="0" pageNumber="49" rank="species" species="truiniorum">
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<emphasis id="E59B61EE60A2A9BCD6AB5569247CFCF5" italics="true" pageId="0" pageNumber="49">P. truiniorum</emphasis>
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</taxonomicName>
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and
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<taxonomicName id="B783CD25784BFBB3542BE689A25BD532" lsidName="P. rekkeri" pageId="0" pageNumber="49" rank="species" species="rekkeri">
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<emphasis id="81477D7C03B075204312198517D2E044" italics="true" pageId="0" pageNumber="49">P. rekkeri</emphasis>
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</taxonomicName>
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are phylogenetically close to the well-known soil-borne species,
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<taxonomicName id="4A8C470053E2A85CB928AF95BB979E1A" lsidName="P. putaminum" pageId="0" pageNumber="49" rank="species" species="putaminum">
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<emphasis id="7DB205282D6C266833976063026A6258" italics="true" pageId="0" pageNumber="49">P. putaminum</emphasis>
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</taxonomicName>
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. However,
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<taxonomicName id="CAE57D15E772668783C9020FBF05FE82" lsidName="P. putaminum" pageId="0" pageNumber="49" rank="species" species="putaminum">
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<emphasis id="6475F8FC416258C25BD74CDF34733C61" italics="true" pageId="0" pageNumber="49">P. putaminum</emphasis>
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</taxonomicName>
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is distinguished from these two new species by producing smaller conidia (3.2-4.2
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<normalizedToken id="675B6D1E43ACF5A4A1C962348FFF9258" originalValue="×">x</normalizedToken>
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2-2.6
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<normalizedToken id="20EBF4C814782FB7D408721533B78F6E" originalValue="μm">μm</normalizedToken>
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) with greenish guttules (
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<bibRefCitation id="5FF60D1714D2C15377F5B5940DA6D9AB" DOI="https://doi.org/10.1079/9780851997438.0000" author="Boerema, GH" journalOrPublisher="Persoonia" pageId="0" pageNumber="49" refId="B10" refString="Boerema, GH, de Gruyter, J, Noordeloos, ME, Hamers, MEC, 2004. Phoma identification manual. Differentiation of specific and infra-specific taxa in culture. CABI Publishing, 1-467. https://doi.org/10.1079/9780851997438.0000" title="Phoma identification manual. Differentiation of specific and infra-specific taxa in culture. CABI Publishing, 1 - 467." url="https://doi.org/10.1079/9780851997438.0000" year="2004">Boerema et al 2004</bibRefCitation>
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).
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</paragraph>
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<caption id="4C507F27DA62A9E751B08F05FCCEAB48" doi="10.3897/mycokeys.65.47704.figure8" httpUri="https://binary.pensoft.net/fig/388211" pageId="0" pageNumber="49" start="Figure 8" startId="F8">
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<paragraph id="62EFAF16B6554E89C488A82D0445C0D5" pageId="0" pageNumber="49">
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<emphasis id="CBFEE87050B0F48D3BDE8B4B83A17FF2" bold="true" pageId="0" pageNumber="49">Figure 8.</emphasis>
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<taxonomicName id="F26F98B61D21E47F8A03E83BF654EE11" authorityName="Hern. - Restr., L. W. Hou, L. Cai & Crous" authorityYear="2020" class="Dothideomycetes" family="Didymellaceae" genus="Paraboeremia" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Paraboeremia truiniorum" order="Pleosporales" pageId="0" pageNumber="49" phylum="Ascomycota" rank="species" species="truiniorum">
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<emphasis id="A141E37C39161A56F60EE9CE444A92DC" italics="true" pageId="0" pageNumber="49">Paraboeremia truiniorum</emphasis>
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</taxonomicName>
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(CBS 144952).
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<emphasis id="BAE496E3C30C473CE4B6D77B7946B23C" bold="true" pageId="0" pageNumber="49">A, B</emphasis>
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Colony on OA (front and reverse)
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<emphasis id="2AACC4BCDC55DEAB64B4B6CD5ED6584C" bold="true" pageId="0" pageNumber="49">C, D</emphasis>
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colony on MEA (front and reverse)
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<emphasis id="24BB8953E9BCF60FEAFE87E150704838" bold="true" pageId="0" pageNumber="49">E, F</emphasis>
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colony on PDA (front and reverse)
|
||
<emphasis id="8D96BF610249DB39E80C4562E374FCE3" bold="true" pageId="0" pageNumber="49">G</emphasis>
|
||
pycnidia forming on OA
|
||
<emphasis id="70C516900F8231D5A66E12219924C0F1" bold="true" pageId="0" pageNumber="49">H</emphasis>
|
||
pycnidium
|
||
<emphasis id="BF83D1124000C4DF4FAAE9F11E5F8E37" bold="true" pageId="0" pageNumber="49">I</emphasis>
|
||
section of pycnidium
|
||
<emphasis id="F2A0E4B2C010EE0990594238217346A4" bold="true" pageId="0" pageNumber="49">J</emphasis>
|
||
section of pycnidial wall
|
||
<emphasis id="A2F698DF2C2F29B68A78B6A8467B6565" bold="true" pageId="0" pageNumber="49">K-N</emphasis>
|
||
conidiogenous cells
|
||
<emphasis id="7D02D322049CE06BEA253ACB8A1F9D46" bold="true" pageId="0" pageNumber="49">O</emphasis>
|
||
conidia. Scale bars: 20
|
||
<normalizedToken id="E06158671CB4AE6C7443FF026A38B2B5" originalValue="μm">μm</normalizedToken>
|
||
(
|
||
<emphasis id="2D8623DC646DE8D87E46ED60D1BEB79E" bold="true" pageId="0" pageNumber="49">H</emphasis>
|
||
); 50
|
||
<normalizedToken id="4F10A6DDEEB8C9E3E5F4E965ECA2D0D0" originalValue="μm">μm</normalizedToken>
|
||
(
|
||
<emphasis id="06444D6D61BDC7D5ABD596AE7F446D2D" bold="true" pageId="0" pageNumber="49">I</emphasis>
|
||
); 5
|
||
<normalizedToken id="0423923303D89025AA84FA112E3E1E05" originalValue="μm">μm</normalizedToken>
|
||
(
|
||
<emphasis id="23336FF5C7F43E036FC00F4C9E4AE0D0" bold="true" pageId="0" pageNumber="49">J-O</emphasis>
|
||
).
|
||
</paragraph>
|
||
</caption>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |