324 lines
50 KiB
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324 lines
50 KiB
XML
<document id="8739D2115D43D580FFA98FE1FA60CC4F" ID-DOI="10.11646/phytotaxa.365.1.1" ID-ISSN="1179-3163" ID-Zenodo-Dep="13704923" IM.bibliography_approvedBy="felipe" IM.illustrations_approvedBy="felipe" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="GgImagineBatch" IM.taxonomicNames_approvedBy="felipe" IM.treatments_approvedBy="felipe" checkinTime="1725584015738" checkinUser="felipe" docAuthor="Mai, Truc, Johansen, Jeffrey R., Pietrasiak, Nicole, Bohunická, Markéta & Martin, Michael P." docDate="2018" docId="03BFDE646C4DFFA1009AFB3AFC88FB8F" docLanguage="en" docName="phytotaxa.365.1.1.pdf" docOrigin="Phytotaxa 365 (1)" docSource="http://dx.doi.org/10.11646/phytotaxa.365.1.1" docStyle="DocumentStyle:96748F8F1B6C902996E134952A3A36B9.13:Phytotaxa.2014-.journal_article" docStyleId="96748F8F1B6C902996E134952A3A36B9" docStyleName="Phytotaxa.2014-.journal_article" docStyleVersion="13" docTitle="Timaviella radians Mai, Johansen et Bohunicka 2018, sp. nov." docType="treatment" docVersion="2" lastPageNumber="38" masterDocId="FF86A61C6C6EFF840012FFAAFF98FF96" masterDocTitle="Revision of the Synechococcales (Cyanobacteria) through recognition of four families including Oculatellaceae fam. nov. and Trichocoleaceae fam. nov. and six new genera containing 14 species" masterLastPageNumber="59" masterPageNumber="1" pageNumber="36" updateTime="1725596029488" updateUser="ExternalLinkService" zenodo-license-figures="UNSPECIFIED" zenodo-license-treatments="UNSPECIFIED">
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<mods:title id="E8F26A922D3E51A7D43807CA66A64C60">Revision of the Synechococcales (Cyanobacteria) through recognition of four families including Oculatellaceae fam. nov. and Trichocoleaceae fam. nov. and six new genera containing 14 species</mods:title>
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<mods:namePart id="F666AC6DA277780D9CE07E6FA0F95A85">Mai, Truc</mods:namePart>
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<mods:affiliation id="C7B16FF4240B56EDFFF0AB905C4FC33F">Department of Biology, John Carroll University, 1 John Carroll Blvd., University Heights, Ohio 44118, USA & Department of Plant and Environmental Sciences, New Mexico State University, Skeen Hall Room N 127, P. O Box 30003 MSC 3 Q, Las Cruces, New Mexico 88003, USA.</mods:affiliation>
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<mods:namePart id="224D3F7E014AD807F0F449276414069A">Johansen, Jeffrey R.</mods:namePart>
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<mods:affiliation id="AC30AA1104937756EF79C76108B2966E">Department of Biology, John Carroll University, 1 John Carroll Blvd., University Heights, Ohio 44118, USA & Department of Botany, Faculty of Science, University of South Bohemia, 31 Branišovská, 37005 České Budějovice, Czech Republic</mods:affiliation>
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<mods:namePart id="455F7F266F64CF9181CB46BF90CB8E78">Pietrasiak, Nicole</mods:namePart>
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<mods:affiliation id="67AAA8026180F15F11D5875A57BE6723">Department of Plant and Environmental Sciences, New Mexico State University, Skeen Hall Room N 127, P. O Box 30003 MSC 3 Q, Las Cruces, New Mexico 88003, USA.</mods:affiliation>
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<mods:namePart id="DB781B476504318DA6132C474698D9EF">Bohunická, Markéta</mods:namePart>
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<mods:namePart id="13F6AAC38AA9CBBE4FE9F8D6558A69B9">Martin, Michael P.</mods:namePart>
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<mods:affiliation id="8E840D45F22788856F766F02943AA620">Department of Biology, John Carroll University, 1 John Carroll Blvd., University Heights, Ohio 44118, USA</mods:affiliation>
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<mods:title id="DE7104C9E4C5094E5E3326304EC545E1">Phytotaxa</mods:title>
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<mods:part id="043E7CAEAF05C74A88B28C2C9D81FA1F">
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<mods:date id="9A9B22AF528AECA15488338999A82B4C">2018</mods:date>
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<mods:number id="9F5F60A7AC47BC1CECC27E0A9F6128A2">2018-08-16</mods:number>
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<mods:number id="77DA671C16740FF1E29D4169707A95AA">365</mods:number>
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<mods:url id="3A954978AD8B80A48F3BF91FF913BD17">http://dx.doi.org/10.11646/phytotaxa.365.1.1</mods:url>
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<mods:classification id="A8C58E83428F82EC38A173DB7DC83C33">journal article</mods:classification>
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<mods:identifier id="912C14B4E2C407B5532A6C717BA5A031" type="DOI">10.11646/phytotaxa.365.1.1</mods:identifier>
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<subSubSection id="C30C3CF96C4DFFA7009AFB3AFC8EFB3F" box="[136,790,1168,1193]" pageId="35" pageNumber="36" type="nomenclature">
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<paragraph id="8BA96F726C4DFFA7009AFB3AFC8EFB3F" blockId="35.[136,1452,1168,2057]" box="[136,790,1168,1193]" pageId="35" pageNumber="36">
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<heading id="D0E1D81E6C4DFFA7009AFB3AFC8EFB3F" bold="true" box="[136,790,1168,1193]" fontSize="11" level="1" pageId="35" pageNumber="36" reason="1">
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<emphasis id="B962B3606C4DFFA7009AFB3AFC8EFB3F" bold="true" box="[136,790,1168,1193]" pageId="35" pageNumber="36">
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<taxonomicName id="4C1614F16C4DFFA7009AFB3AFD20FB3F" authority="Mai, Johansen et Bohunicka" authorityName="Mai, Johansen et Bohunicka" authorityYear="2018" box="[136,696,1168,1193]" class="Cyanobacteriia" family="Oculatellaceae" genus="Timaviella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Synechococcales" pageId="35" pageNumber="36" phylum="Cyanobacteria" rank="species" species="radians" status="sp. nov.">
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<emphasis id="B962B3606C4DFFA7009AFB3AFEF8FB3F" bold="true" box="[136,352,1168,1193]" italics="true" pageId="35" pageNumber="36">Timaviella radians</emphasis>
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Mai, Johansen
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<emphasis id="B962B3606C4DFFA7020EFB3AFDA8FB3F" bold="true" box="[540,560,1168,1193]" italics="true" pageId="35" pageNumber="36">et</emphasis>
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Bohunická
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</taxonomicName>
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<emphasis id="B962B3606C4DFFA702D2FB3AFC8EFB3F" bold="true" box="[704,790,1168,1193]" italics="true" pageId="35" pageNumber="36">
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<taxonomicNameLabel id="A2510E1B6C4DFFA702D2FB3AFC8EFB3F" box="[704,790,1168,1193]" pageId="35" pageNumber="36" rank="species">sp. nov.</taxonomicNameLabel>
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</emphasis>
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</emphasis>
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection id="C30C3CF96C4DFFA7009AFB1EFCC0FACB" pageId="35" pageNumber="36" type="diagnosis">
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<paragraph id="8BA96F726C4DFFA7009AFB1EFCC0FACB" blockId="35.[136,1452,1168,2057]" pageId="35" pageNumber="36">
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<emphasis id="B962B3606C4DFFA7009AFB1EFE9DFB5B" bold="true" box="[136,261,1204,1229]" pageId="35" pageNumber="36">Diagnosis:</emphasis>
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―Differing from
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<taxonomicName id="4C1614F16C4DFFA701C0FB1EFD1FFB5B" authorityName="Mai, Johansen et Bohunicka" authorityYear="2018" box="[466,647,1204,1229]" class="Cyanobacteriia" family="Oculatellaceae" genus="Timaviella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Synechococcales" pageId="35" pageNumber="36" phylum="Cyanobacteria" rank="species" species="obliquedivisa">
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<emphasis id="B962B3606C4DFFA701C0FB1EFD1FFB5B" box="[466,647,1204,1229]" italics="true" pageId="35" pageNumber="36">T. obliquedivisa</emphasis>
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</taxonomicName>
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in the formation of radial microscopic colonies, color and occasional pigmentation of the trichomes. D1-D1’ helix similar in structure to those of
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<taxonomicName id="4C1614F16C4DFFA703C7FB72FB1FFB67" authorityName="Mai, Johansen et Bohunicka" authorityYear="2018" box="[981,1159,1240,1265]" class="Cyanobacteriia" family="Oculatellaceae" genus="Timaviella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Synechococcales" pageId="35" pageNumber="36" phylum="Cyanobacteria" rank="species" species="obliquedivisa">
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<emphasis id="B962B3606C4DFFA703C7FB72FB1FFB67" box="[981,1159,1240,1265]" italics="true" pageId="35" pageNumber="36">T. obliquedivisa</emphasis>
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</taxonomicName>
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and
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<taxonomicName id="4C1614F16C4DFFA704AFFB72FAB6FB67" authorityName="Mai, Johansen et Bohunicka" authorityYear="2018" box="[1213,1326,1240,1265]" class="Cyanobacteriia" family="Oculatellaceae" genus="Timaviella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Synechococcales" pageId="35" pageNumber="36" phylum="Cyanobacteria" rank="species" species="radians">
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<emphasis id="B962B3606C4DFFA704AFFB72FAB6FB67" box="[1213,1326,1240,1265]" italics="true" pageId="35" pageNumber="36">T. radians</emphasis>
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</taxonomicName>
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, especially in the unilateral bulge sequence, the internal loop at position 14–15/59–60 and the large internal loop at position 20–23/50–54, but differing in length of helix (
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<figureCitation id="132D73F76C4DFFA7029FFA8AFD69FAAF" box="[653,753,1312,1337]" captionStart="FIGURE 6" captionStartId="15.[136,229,1976,1997]" captionTargetBox="[157,1425,273,1857]" captionTargetId="figure-14@15.[151,1436,267,1882]" captionTargetPageId="15" captionText="FIGURE 6. D1-D1’ stems of species described in Oculatellaceae.The stem structures of genera described previously in other publications (Oculatella, Thermoleptolyngbya, Timaviella) or in publications under provision (Trichotorquatus) are not shown here." figureDoi="http://doi.org/10.5281/zenodo.13704935" httpUri="https://zenodo.org/record/13704935/files/figure.png" pageId="35" pageNumber="36">Fig. 6j–l</figureCitation>
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). Box B helix shorter than the Box B helix of other
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<taxonomicName id="4C1614F16C4DFFA70527FA8AFF41FACB" pageId="35" pageNumber="36">
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<emphasis id="B962B3606C4DFFA70527FA8AFA33FAAF" box="[1333,1451,1312,1337]" italics="true" pageId="35" pageNumber="36">Timaviella</emphasis>
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species
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</taxonomicName>
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(
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<figureCitation id="132D73F76C4DFFA700FAFAEEFECBFACB" box="[232,339,1348,1373]" captionStart="FIGURE 7" captionStartId="17.[136,229,1928,1949]" captionTargetBox="[314,1274,759,1806]" captionTargetId="figure-238@17.[311,1276,751,1831]" captionTargetPageId="17" captionText="FIGURE 7. Box B helices of species described in Oculatellaceae. The structures of genera described previously in other publications (Oculatella, Thermoleptolyngbya, Timaviella) or in publications under provision (Trichotorquatus) are not shown here." figureDoi="http://doi.org/10.5281/zenodo.13704937" httpUri="https://zenodo.org/record/13704937/files/figure.png" pageId="35" pageNumber="36">Fig. 7i–k</figureCitation>
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). V2 helix very short, 12 nucleotides (
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<figureCitation id="132D73F76C4DFFA702ECFAEEFCD2FACB" box="[766,842,1348,1373]" captionStart="FIGURE 8" captionStartId="18.[136,229,1187,1208]" captionTargetBox="[152,1434,425,1107]" captionTargetId="figure-143@18.[151,1436,422,1162]" captionTargetPageId="18" captionText="FIGURE 8. V2 helices of species described in Oculatellaceae. Several species do not have this structure, including Pegethrix convoluta, P. indistincta, Antartic Pegethrix species, Cartusia fontana¸ Kaiparowitsia implicata." figureDoi="http://doi.org/10.5281/zenodo.13704941" httpUri="https://zenodo.org/record/13704941/files/figure.png" pageId="35" pageNumber="36">Fig. 8i</figureCitation>
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).
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</paragraph>
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</subSubSection>
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<subSubSection id="C30C3CF96C4DFFA700AFFAC2FC98F8EF" pageId="35" pageNumber="36" type="description">
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<paragraph id="8BA96F726C4DFFA700AFFAC2FE1AF937" blockId="35.[136,1452,1168,2057]" pageId="35" pageNumber="36">
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<emphasis id="B962B3606C4DFFA700AFFAC2FEF5FA17" bold="true" box="[189,365,1384,1409]" pageId="35" pageNumber="36">Description:—</emphasis>
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Colony mounded, leathery, dark olive-brown or dirty olive-green. Filaments relatively short, often clearly widened in meristematic zones (
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<figureCitation id="132D73F76C4DFFA70253FA26FD25FA33" box="[577,701,1420,1445]" captionStart="FIGURE 18" captionStartId="36.[136,229,1847,1868]" captionTargetBox="[239,1348,187,1819]" captionTargetId="figure-16@36.[239,1348,187,1819]" captionTargetPageId="36" captionText="FIGURE 18. Timaviella radians. A–B. Rapid cell division at apical region commonly observed, forming a “basal” part to filament. C. Radial formation of colonies based on trichomes radiating from an attachment point. D. False-branches in singles or in pairs, consecutive, sometimes geminate branching, E. Compact rope-like coils. F. Rapid cell division causing twists and turn of trichome within sheath. Mature filaments isodiametric, trichomes constricted at distinct cross-walls, with one large central granule dominates cytoplasm. Scale bar 10μm in 400X (C) and 1000X magnification (A–B, D–F)." figureDoi="http://doi.org/10.5281/zenodo.13704967" httpUri="https://zenodo.org/record/13704967/files/figure.png" pageId="35" pageNumber="36">Fig. 18a–b</figureCitation>
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), sometimes forming radial colonies (
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<figureCitation id="132D73F76C4DFFA70473FA26FB53FA33" box="[1121,1227,1420,1445]" captionStart="FIGURE 18" captionStartId="36.[136,229,1847,1868]" captionTargetBox="[239,1348,187,1819]" captionTargetId="figure-16@36.[239,1348,187,1819]" captionTargetPageId="36" captionText="FIGURE 18. Timaviella radians. A–B. Rapid cell division at apical region commonly observed, forming a “basal” part to filament. C. Radial formation of colonies based on trichomes radiating from an attachment point. D. False-branches in singles or in pairs, consecutive, sometimes geminate branching, E. Compact rope-like coils. F. Rapid cell division causing twists and turn of trichome within sheath. Mature filaments isodiametric, trichomes constricted at distinct cross-walls, with one large central granule dominates cytoplasm. Scale bar 10μm in 400X (C) and 1000X magnification (A–B, D–F)." figureDoi="http://doi.org/10.5281/zenodo.13704967" httpUri="https://zenodo.org/record/13704967/files/figure.png" pageId="35" pageNumber="36">Figs. 18c</figureCitation>
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), with characteristic consecutive false branching (
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<figureCitation id="132D73F76C4DFFA701D8FA1AFDB2FA5F" box="[458,554,1456,1481]" captionStart="FIGURE 18" captionStartId="36.[136,229,1847,1868]" captionTargetBox="[239,1348,187,1819]" captionTargetId="figure-16@36.[239,1348,187,1819]" captionTargetPageId="36" captionText="FIGURE 18. Timaviella radians. A–B. Rapid cell division at apical region commonly observed, forming a “basal” part to filament. C. Radial formation of colonies based on trichomes radiating from an attachment point. D. False-branches in singles or in pairs, consecutive, sometimes geminate branching, E. Compact rope-like coils. F. Rapid cell division causing twists and turn of trichome within sheath. Mature filaments isodiametric, trichomes constricted at distinct cross-walls, with one large central granule dominates cytoplasm. Scale bar 10μm in 400X (C) and 1000X magnification (A–B, D–F)." figureDoi="http://doi.org/10.5281/zenodo.13704967" httpUri="https://zenodo.org/record/13704967/files/figure.png" pageId="35" pageNumber="36">Fig. 18d</figureCitation>
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). Sheath usually thin and scarcely visible to widened and evident, rarely extended past the apical end of trichome. Trichomes brownish when actively growing, olive-green when approaching senescence, constricted at distinctly visible cross-walls, occasionally forming compact rope-like coils at meristematic or active division zone (
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<figureCitation id="132D73F76C4DFFA70121F9B6FE29F9A3" box="[307,433,1564,1589]" captionStart="FIGURE 18" captionStartId="36.[136,229,1847,1868]" captionTargetBox="[239,1348,187,1819]" captionTargetId="figure-16@36.[239,1348,187,1819]" captionTargetPageId="36" captionText="FIGURE 18. Timaviella radians. A–B. Rapid cell division at apical region commonly observed, forming a “basal” part to filament. C. Radial formation of colonies based on trichomes radiating from an attachment point. D. False-branches in singles or in pairs, consecutive, sometimes geminate branching, E. Compact rope-like coils. F. Rapid cell division causing twists and turn of trichome within sheath. Mature filaments isodiametric, trichomes constricted at distinct cross-walls, with one large central granule dominates cytoplasm. Scale bar 10μm in 400X (C) and 1000X magnification (A–B, D–F)." figureDoi="http://doi.org/10.5281/zenodo.13704967" httpUri="https://zenodo.org/record/13704967/files/figure.png" pageId="35" pageNumber="36">Fig. 18a, e</figureCitation>
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), 1.8–3.7 μm wide. Necridia absent. Hormogonia without sheaths (
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<figureCitation id="132D73F76C4DFFA704AFF9B6FAA4F9A3" box="[1213,1340,1564,1589]" captionStart="FIGURE 18" captionStartId="36.[136,229,1847,1868]" captionTargetBox="[239,1348,187,1819]" captionTargetId="figure-16@36.[239,1348,187,1819]" captionTargetPageId="36" captionText="FIGURE 18. Timaviella radians. A–B. Rapid cell division at apical region commonly observed, forming a “basal” part to filament. C. Radial formation of colonies based on trichomes radiating from an attachment point. D. False-branches in singles or in pairs, consecutive, sometimes geminate branching, E. Compact rope-like coils. F. Rapid cell division causing twists and turn of trichome within sheath. Mature filaments isodiametric, trichomes constricted at distinct cross-walls, with one large central granule dominates cytoplasm. Scale bar 10μm in 400X (C) and 1000X magnification (A–B, D–F)." figureDoi="http://doi.org/10.5281/zenodo.13704967" httpUri="https://zenodo.org/record/13704967/files/figure.png" pageId="35" pageNumber="36">Fig. 18d, f</figureCitation>
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). Cells in hormogonia and young filaments isodiametric, becoming shorter than wide with maturation 1.2–2.2 μm long, often with one large central granule, often with purplish pigmentation (
|
||
<figureCitation id="132D73F76C4DFFA70370F9CEFC27F9EB" box="[866,959,1636,1661]" captionStart="FIGURE 18" captionStartId="36.[136,229,1847,1868]" captionTargetBox="[239,1348,187,1819]" captionTargetId="figure-16@36.[239,1348,187,1819]" captionTargetPageId="36" captionText="FIGURE 18. Timaviella radians. A–B. Rapid cell division at apical region commonly observed, forming a “basal” part to filament. C. Radial formation of colonies based on trichomes radiating from an attachment point. D. False-branches in singles or in pairs, consecutive, sometimes geminate branching, E. Compact rope-like coils. F. Rapid cell division causing twists and turn of trichome within sheath. Mature filaments isodiametric, trichomes constricted at distinct cross-walls, with one large central granule dominates cytoplasm. Scale bar 10μm in 400X (C) and 1000X magnification (A–B, D–F)." figureDoi="http://doi.org/10.5281/zenodo.13704967" httpUri="https://zenodo.org/record/13704967/files/figure.png" pageId="35" pageNumber="36">Fig. 18f</figureCitation>
|
||
). Apical cell rounded, conically rounded, or pancake-like rounded.
|
||
</paragraph>
|
||
<paragraph id="8BA96F726C4DFFA700AFF906FC98F8EF" blockId="35.[136,1452,1168,2057]" pageId="35" pageNumber="36">
|
||
D1-D1’ helix 81 nucleotides long, with a 3’ unilateral bulge of 8 nucleotides (5’-CAUCCCAA-3’); mid-helix with several internal loops at position 14–15/59–60, 20–23/50–54, 26–27/46–47 and a nucleotide mismatch of G/G at position 30/43, with. terminal loop having sequence 5’-GAGA-3’ (
|
||
<figureCitation id="132D73F76C4DFFA7038BF95EFC7FF89B" box="[921,999,1780,1805]" captionStart="FIGURE 6" captionStartId="15.[136,229,1976,1997]" captionTargetBox="[157,1425,273,1857]" captionTargetId="figure-14@15.[151,1436,267,1882]" captionTargetPageId="15" captionText="FIGURE 6. D1-D1’ stems of species described in Oculatellaceae.The stem structures of genera described previously in other publications (Oculatella, Thermoleptolyngbya, Timaviella) or in publications under provision (Trichotorquatus) are not shown here." figureDoi="http://doi.org/10.5281/zenodo.13704935" httpUri="https://zenodo.org/record/13704935/files/figure.png" pageId="35" pageNumber="36">Fig. 6l</figureCitation>
|
||
). Box B helix 33 nucleotides long, with two internal loops at positions 5/28–29 and 8–9/25; terminal loop having sequence 5’-UAAUA-3’ (
|
||
<figureCitation id="132D73F76C4DFFA704F1F8B2FAAFF8A7" box="[1251,1335,1816,1841]" captionStart="FIGURE 7" captionStartId="17.[136,229,1928,1949]" captionTargetBox="[314,1274,759,1806]" captionTargetId="figure-238@17.[311,1276,751,1831]" captionTargetPageId="17" captionText="FIGURE 7. Box B helices of species described in Oculatellaceae. The structures of genera described previously in other publications (Oculatella, Thermoleptolyngbya, Timaviella) or in publications under provision (Trichotorquatus) are not shown here." figureDoi="http://doi.org/10.5281/zenodo.13704937" httpUri="https://zenodo.org/record/13704937/files/figure.png" pageId="35" pageNumber="36">Fig. 7k</figureCitation>
|
||
). V2 helix very short (
|
||
<figureCitation id="132D73F76C4DFFA70115F896FECAF8C3" box="[263,338,1852,1877]" captionStart="FIGURE 8" captionStartId="18.[136,229,1187,1208]" captionTargetBox="[152,1434,425,1107]" captionTargetId="figure-143@18.[151,1436,422,1162]" captionTargetPageId="18" captionText="FIGURE 8. V2 helices of species described in Oculatellaceae. Several species do not have this structure, including Pegethrix convoluta, P. indistincta, Antartic Pegethrix species, Cartusia fontana¸ Kaiparowitsia implicata." figureDoi="http://doi.org/10.5281/zenodo.13704941" httpUri="https://zenodo.org/record/13704941/files/figure.png" pageId="35" pageNumber="36">Fig. 8i</figureCitation>
|
||
). V3 helix 59 nucleotides long, with one internal loop at position 5/53–55 and two unpaired adenine residues at positions 48 and 44 of the 3’ strand (
|
||
<figureCitation id="132D73F76C4DFFA7028DF8CAFD6BF8EF" box="[671,755,1888,1913]" captionStart="FIGURE 9" captionStartId="19.[136,229,1958,1979]" captionTargetBox="[229,912,769,1871]" captionTargetId="figure-135@19.[151,1436,768,1875]" captionTargetPageId="19" captionText="FIGURE 9. V3 helices of species described in Oculatellaceae. All species described have this structure. The V3 helix of Cartusia aeruginosa is missing because we do not have the full length of its ITS region." figureDoi="http://doi.org/10.5281/zenodo.13704943" httpUri="https://zenodo.org/record/13704943/files/figure.png" pageId="35" pageNumber="36">Fig. 9k</figureCitation>
|
||
).
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="C30C3CF96C4DFFA700AFF82EFB2CF80B" box="[189,1204,1924,1949]" pageId="35" pageNumber="36" type="etymology">
|
||
<paragraph id="8BA96F726C4DFFA700AFF82EFB2CF80B" blockId="35.[136,1452,1168,2057]" box="[189,1204,1924,1949]" pageId="35" pageNumber="36">
|
||
<emphasis id="B962B3606C4DFFA700AFF82EFEFCF80B" bold="true" box="[189,356,1924,1949]" pageId="35" pageNumber="36">Etymology:—</emphasis>
|
||
<taxonomicName id="4C1614F16C4DFFA70176F82EFE22F80B" authorityName="Mai, Johansen et Bohunicka" authorityYear="2018" box="[356,442,1924,1949]" class="Cyanobacteriia" family="Oculatellaceae" genus="Timaviella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Synechococcales" pageId="35" pageNumber="36" phylum="Cyanobacteria" rank="species" species="radians">
|
||
<emphasis id="B962B3606C4DFFA70176F82EFE22F80B" box="[356,442,1924,1949]" italics="true" pageId="35" pageNumber="36">radians</emphasis>
|
||
</taxonomicName>
|
||
(L.): radiating, for the radiating pattern of filaments in the colonies.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="C30C3CF96C4DFFA100AFF802FC88FB8F" lastPageId="37" lastPageNumber="38" pageId="35" pageNumber="36" type="materials_examined">
|
||
<paragraph id="8BA96F726C4DFFA700AFF802FC29F79F" blockId="35.[136,1452,1168,2057]" pageId="35" pageNumber="36">
|
||
<emphasis id="B962B3606C4DFFA700AFF802FEF9F857" bold="true" box="[189,353,1960,1985]" pageId="35" pageNumber="36">Type locality:</emphasis>
|
||
―Lower Calf Creek Falls site, Grand Staircase-Escalante National Monument,
|
||
<geoCoordinate id="EE2209B56C4DFFA704E0F802FF29F873" degrees="37" direction="north" minutes="49" orientation="latitude" pageId="35" pageNumber="36" precision="1" seconds="44.77" value="37.8291">
|
||
37°49’44.77’’
|
||
<geoCoordinate id="EE2209B56C4DFFA7059EF802FF29F873" degrees="111" direction="west" minutes="25" orientation="longitude" pageId="35" pageNumber="36" precision="1" seconds="12.58" value="-111.42016">N-111</geoCoordinate>
|
||
</geoCoordinate>
|
||
°25’12.58”W, collected on
|
||
<date id="FFA849B26C4DFFA701FDF866FD31F873" box="[495,681,1996,2021]" pageId="35" pageNumber="36" value="2006-08-15">15 August 2006</date>
|
||
by Markéta Bohunická. Large seep wall and waterfall in Navajo Sandstone, in the
|
||
<collectionCode id="ED07F7B76C4DFFA7015DF85AFE2CF79F" box="[335,436,2032,2057]" pageId="35" pageNumber="36">GSENM</collectionCode>
|
||
, Kane County,
|
||
<collectingRegion id="49D2A1906C4DFFA70272F85AFD01F79F" box="[608,665,2032,2057]" country="United States of America" name="Utah" pageId="35" pageNumber="36">Utah</collectingRegion>
|
||
,
|
||
<collectingCountry id="F3012FE26C4DFFA702B6F85AFD78F79F" box="[676,736,2032,2057]" name="United States of America" pageId="35" pageNumber="36">USA</collectingCountry>
|
||
. Mats in waterfall.
|
||
</paragraph>
|
||
<caption id="DF693FFA6C4AFFA0009AF89DFD2EF84A" ID-DOI="http://doi.org/10.5281/zenodo.13704967" ID-Zenodo-Dep="13704967" httpUri="https://zenodo.org/record/13704967/files/figure.png" pageId="36" pageNumber="37" startId="36.[136,229,1847,1868]" targetBox="[239,1348,187,1819]" targetPageId="36" targetType="figure">
|
||
<paragraph id="8BA96F726C4AFFA0009AF89DFD2EF84A" blockId="36.[136,1452,1847,2012]" pageId="36" pageNumber="37">
|
||
<emphasis id="B962B3606C4AFFA0009AF89DFE93F8DA" bold="true" box="[136,267,1847,1868]" pageId="36" pageNumber="37">FIGURE 18.</emphasis>
|
||
<taxonomicName id="4C1614F16C4AFFA00100F89DFE50F8DA" authorityName="Mai, Johansen et Bohunicka" authorityYear="2018" box="[274,456,1847,1868]" class="Cyanobacteriia" family="Oculatellaceae" genus="Timaviella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Synechococcales" pageId="36" pageNumber="37" phylum="Cyanobacteria" rank="species" species="radians">
|
||
<emphasis id="B962B3606C4AFFA00100F89DFE50F8DA" box="[274,456,1847,1868]" italics="true" pageId="36" pageNumber="37">Timaviella radians</emphasis>
|
||
</taxonomicName>
|
||
. A–B. Rapid cell division at apical region commonly observed, forming a “basal” part to filament. C. Radial formation of colonies based on trichomes radiating from an attachment point. D. False-branches in singles or in pairs, consecutive, sometimes geminate branching, E. Compact rope-like coils. F. Rapid cell division causing twists and turn of trichome within sheath. Mature filaments isodiametric, trichomes constricted at distinct cross-walls, with one large central granule dominates cytoplasm. Scale bar 10μm in 400X (C) and 1000X magnification (A–B, D–F).
|
||
</paragraph>
|
||
</caption>
|
||
<paragraph id="8BA96F726C4BFFA100AFFF0AFE8FFF4B" blockId="37.[136,1454,160,1049]" pageId="37" pageNumber="38">
|
||
<materialsCitation id="3B7E652F6C4BFFA100AFFF0AFE8FFF4B" collectionCode="BRY" collectorName="Monte L. Bean Museum" location="Utah" pageId="37" pageNumber="38" specimenCode="BRY37789" specimenCount="1" stateProvince="Utah" typeStatus="holotype">
|
||
<emphasis id="B962B3606C4BFFA100AFFF0AFD8FFF2F" bold="true" box="[189,535,160,185]" pageId="37" pageNumber="38">
|
||
<typeStatus id="54ADD1D06C4BFFA100AFFF0AFEB2FF2F" box="[189,298,160,185]" pageId="37" pageNumber="38" type="holotype">Holotype</typeStatus>
|
||
here designated:—
|
||
</emphasis>
|
||
<specimenCode id="DBB0C7096C4BFFA10204FF0AFD05FF2F" box="[534,669,160,185]" collectionCode="BRY" country="USA" httpUri="http://biocol.org/urn:lsid:biocol.org:col:15673" lsid="urn:lsid:biocol.org:col:15673" name="Brigham Young University - S.L. Welsh Herbarium" pageId="37" pageNumber="38" type="Herbarium">BRY37789</specimenCode>
|
||
!, Herbarium for Nonvascular Cryptogams,
|
||
<collectorName id="26E30AA46C4BFFA10499FF0AFA3FFF2F" box="[1163,1447,160,185]" pageId="37" pageNumber="38">Monte L. Bean Museum</collectorName>
|
||
, Provo,
|
||
<collectingRegion id="49D2A1906C4BFFA100CBFF6EFE8BFF4B" box="[217,275,196,221]" country="United States of America" name="Utah" pageId="37" pageNumber="38">Utah</collectingRegion>
|
||
.
|
||
</materialsCitation>
|
||
</paragraph>
|
||
<paragraph id="8BA96F726C4BFFA100AFFF42FAFBFE97" blockId="37.[136,1454,160,1049]" box="[189,1379,232,257]" pageId="37" pageNumber="38">
|
||
<emphasis id="B962B3606C4BFFA100AFFF42FE13FE97" bold="true" box="[189,395,232,257]" pageId="37" pageNumber="38">Reference strain:</emphasis>
|
||
―GSE-UNK-7
|
||
<collectionCode id="ED07F7B76C4BFFA1022EFF42FDD7FE97" box="[572,591,232,257]" country="Chile" name="Departamento de Geologia, Universidad de Chile" pageId="37" pageNumber="38">R</collectionCode>
|
||
, Algal Culture Collection at John Carroll University, Cleveland,
|
||
<collectingCountry id="F3012FE26C4BFFA10531FF42FAC7FE97" box="[1315,1375,232,257]" name="United States of America" pageId="37" pageNumber="38">USA</collectingCountry>
|
||
.
|
||
</paragraph>
|
||
<paragraph id="8BA96F726C4BFFA100AFFEA6FC88FB8F" blockId="37.[136,1454,160,1049]" pageId="37" pageNumber="38">
|
||
<emphasis id="B962B3606C4BFFA100AFFEA6FE2CFEB3" bold="true" box="[189,436,268,293]" pageId="37" pageNumber="38">Taxonomic notes:—</emphasis>
|
||
Our strain closely resembles
|
||
<taxonomicName id="4C1614F16C4BFFA10309FEA6FDD8FEDF" authority="(Zopf ex Hansgirg 1892: 41) Anagnostidis & Komarek (1988: 391)" authorityName="Anagnostidis & Komarek" authorityPageNumber="391" authorityYear="1988" baseAuthorityName="Zopf ex Hansgirg" baseAuthorityPageNumber="41" baseAuthorityYear="1892" class="Cyanophyceae" family="Oscillatoriaceae" genus="Leptolyngbya" kingdom="Bacteria" order="Nostocales" pageId="37" pageNumber="38" phylum="Cyanobacteria" rank="species" species="gracillima">
|
||
<emphasis id="B962B3606C4BFFA10309FEA6FBA0FEB3" box="[795,1080,268,293]" italics="true" pageId="37" pageNumber="38">Leptolyngbya gracillima</emphasis>
|
||
(Zopf ex Hansgirg 1892: 41) Anagnostidis &
|
||
<bibRefCitation id="EF8712836C4BFFA10157FE9AFDD8FEDF" author="Komarek, J. & Lukavsky, J." box="[325,576,304,329]" pageId="37" pageNumber="38" pagination="249 - 267" refId="ref34146" refString="Komarek, J. & Lukavsky, J. (1988) Arthronema, a new cyanophyte genus from Afro-Asian deserts. Archiv fur Hydrobiologie, Supplement 50 - 53: 249 - 267." type="book chapter" year="1988">Komárek (1988: 391)</bibRefCitation>
|
||
</taxonomicName>
|
||
. It matches the recent description of this widely-reported taxon in
|
||
<bibRefCitation id="EF8712836C4BFFA10551FE9AFE17FEFB" author="Komarek, J. & Anagnostidis, K." pageId="37" pageNumber="38" refId="ref34263" refString="Komarek, J. & Anagnostidis, K. (2005) Cyanoprokaryota II. In: Budel, B., Krienitz, L., Gartner, G. & Schagerl, M. (Eds.) Susswasserflora von Mittleuropa 19 / 2. Elsevier / Spektrum, Munchen, 759 pp." type="book" year="2005">Komárek & Anagnostidis (2005)</bibRefCitation>
|
||
, with the exception that cells in that species are isodiametric to longer than wide instead of isodiametric to shorter than wide, as seen in
|
||
<taxonomicName id="4C1614F16C4BFFA1028AFED2FC95FE07" authorityName="Mai, Johansen et Bohunicka" authorityYear="2018" box="[664,781,376,401]" class="Cyanobacteriia" family="Oculatellaceae" genus="Timaviella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Synechococcales" pageId="37" pageNumber="38" phylum="Cyanobacteria" rank="species" species="radians">
|
||
<emphasis id="B962B3606C4BFFA1028AFED2FC95FE07" box="[664,781,376,401]" italics="true" pageId="37" pageNumber="38">T. radians</emphasis>
|
||
</taxonomicName>
|
||
. The radial arrangements of filaments and the occasional coiling have also not been observed in
|
||
<taxonomicName id="4C1614F16C4BFFA10251FE36FD4EFE23" authorityName="Anagnostidis & Komarek" authorityYear="1988" baseAuthorityName="Zopf ex Hansgirg" baseAuthorityYear="1892" box="[579,726,412,437]" class="Cyanophyceae" family="Oscillatoriaceae" genus="Leptolyngbya" kingdom="Bacteria" order="Nostocales" pageId="37" pageNumber="38" phylum="Cyanobacteria" rank="species" species="gracillima">
|
||
<emphasis id="B962B3606C4BFFA10251FE36FD4EFE23" box="[579,726,412,437]" italics="true" pageId="37" pageNumber="38">L. gracillima</emphasis>
|
||
</taxonomicName>
|
||
material. This taxon is interesting as it was originally described as
|
||
<taxonomicName id="4C1614F16C4BFFA100B5FE6AFDF9FE4F" authority="Zopf (1882: 44)" authorityName="Zopf" authorityPageNumber="44" authorityYear="1882" box="[167,609,448,473]" class="Cyanobacteriia" family="Microcoleaceae" genus="Glaucothrix" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Cyanobacteriales" pageId="37" pageNumber="38" phylum="Cyanobacteria" rank="species" species="gracillima">
|
||
<emphasis id="B962B3606C4BFFA100B5FE6AFE33FE4F" box="[167,427,448,473]" italics="true" pageId="37" pageNumber="38">Glaucothrix gracillima</emphasis>
|
||
<bibRefCitation id="EF8712836C4BFFA101A0FE6AFDF9FE4F" author="Zopf, W. F." box="[434,609,448,473]" pageId="37" pageNumber="38" refId="ref38691" refString="Zopf, W. F. (1882) Zur Morphologie der Spaltpflanzen (Spaltpilze und Spaltalgen). Verlag von Veit & Comp, Leipzig, pp. 1 - 74. TABLE S 1. List of DNA sequences for rbcLX (Rubisco 1,5 - biphosphate), cpcBA (Phycocyanin subunit βα and IGS), and 23 S- 5 S ITS (or partial 23 S) sequences. Annotation: - F. (Family): L = Leptolyngbyaceae; O = Oculatellaceae; Pr = Prochlorotrichaceae; T = Trichocoleaceae; Ps = Pseudanabaenaceae. NCBI Accession Number: N / A = Sequences not available; Accession number (bold) = Multiple clones with multiple accession numbers on NCBI; Accession number (regular) = Single sequence with single accession number on NCBI; Collection site: KNMNP = Kawai Nui Marsh Nature Preserve; JTNP = Joshua Tree National Park; GSENM = Grand Staircase-Escalante National Monument; GSMNP = Great Smokey Mountain National Park; EYNF = El Yunque National Forest." type="book" year="1882">Zopf (1882:44)</bibRefCitation>
|
||
</taxonomicName>
|
||
, named
|
||
<taxonomicName id="4C1614F16C4BFFA102D2FE6AFB49FE4F" authority="Hansgirg (1887: 108)" authorityName="Hansgirg" authorityPageNumber="108" authorityYear="1887" box="[704,1233,448,473]" class="Cyanophyceae" family="Scytonemataceae" genus="Plectonema" kingdom="Bacteria" order="Nostocales" pageId="37" pageNumber="38" phylum="Cyanobacteria" rank="species" species="gracillimum">
|
||
<emphasis id="B962B3606C4BFFA102D2FE6AFC4DFE4F" box="[704,981,448,473]" italics="true" pageId="37" pageNumber="38">Plectonema gracillimum</emphasis>
|
||
<bibRefCitation id="EF8712836C4BFFA103CEFE6AFB49FE4F" author="Hansgirg, A." box="[988,1233,448,473]" pageId="37" pageNumber="38" refId="ref33245" refString="Hansgirg, A. (1887) Physiologische und algologische Studien. Berichtigungen, Prague, 187 pp." type="book" year="1887">Hansgirg (1887: 108)</bibRefCitation>
|
||
</taxonomicName>
|
||
, and then validated post-starting point (
|
||
<bibRefCitation id="EF8712836C4BFFA10178FE4EFD93FE6B" author="Gomont, M." box="[362,523,484,509]" pageId="37" pageNumber="38" pagination="91 - 264" refId="ref33040" refString="Gomont, M. (1892) Monographie des Oscillariees (Nostocacees Homocystees). Deuxieme partie. - Lyngbyees. Annales des Sciences Naturelles, Botanique, Serie 7 (16): 91 - 264." type="journal article" year="1892">Gomont 1892</bibRefCitation>
|
||
) by Hansgirg (1892:41). A
|
||
<typeStatus id="54ADD1D06C4BFFA10343FE4EFC20FE6B" box="[849,952,484,509]" pageId="37" pageNumber="38" type="lectotype">lectotype</typeStatus>
|
||
specimen for the taxon was designated by Drouet (1968:41), who chose a herbarium sample collected by P. Richter from wet walls in a warm spring near Anger,
|
||
<collectingRegion id="49D2A1906C4BFFA100C9FD86FEADFDD3" box="[219,309,556,581]" country="Germany" name="Bayern" pageId="37" pageNumber="38">Bavaria</collectingRegion>
|
||
,
|
||
<collectingCountry id="F3012FE26C4BFFA1012DFD86FE3FFDD3" box="[319,423,556,581]" name="Germany" pageId="37" pageNumber="38">Germany</collectingCountry>
|
||
deposited in the Drouet Collection at the Smithsonian Institution (Alg. Exs. No. 593a). This was perhaps an unfortunate choice for the
|
||
<typeStatus id="54ADD1D06C4BFFA10279FDFAFD4DFDFF" box="[619,725,592,617]" pageId="37" pageNumber="38" type="lectotype">lectotype</typeStatus>
|
||
, as the original material of Zopf was not collected from a warm spring, but it remains a validly designated
|
||
<typeStatus id="54ADD1D06C4BFFA1026AFDDEFD7AFD1B" box="[632,738,628,653]" pageId="37" pageNumber="38" type="lectotype">lectotype</typeStatus>
|
||
. Even though the descriptions of
|
||
<bibRefCitation id="EF8712836C4BFFA1047AFDDEFB6BFD1B" author="Zopf, W. F." box="[1128,1267,628,653]" pageId="37" pageNumber="38" refId="ref38691" refString="Zopf, W. F. (1882) Zur Morphologie der Spaltpflanzen (Spaltpilze und Spaltalgen). Verlag von Veit & Comp, Leipzig, pp. 1 - 74. TABLE S 1. List of DNA sequences for rbcLX (Rubisco 1,5 - biphosphate), cpcBA (Phycocyanin subunit βα and IGS), and 23 S- 5 S ITS (or partial 23 S) sequences. Annotation: - F. (Family): L = Leptolyngbyaceae; O = Oculatellaceae; Pr = Prochlorotrichaceae; T = Trichocoleaceae; Ps = Pseudanabaenaceae. NCBI Accession Number: N / A = Sequences not available; Accession number (bold) = Multiple clones with multiple accession numbers on NCBI; Accession number (regular) = Single sequence with single accession number on NCBI; Collection site: KNMNP = Kawai Nui Marsh Nature Preserve; JTNP = Joshua Tree National Park; GSENM = Grand Staircase-Escalante National Monument; GSMNP = Great Smokey Mountain National Park; EYNF = El Yunque National Forest." type="book" year="1882">Zopf (1882)</bibRefCitation>
|
||
and subsequent authors matches our taxon fairly closely, this
|
||
<typeStatus id="54ADD1D06C4BFFA1029CFD32FD6DFD27" box="[654,757,664,689]" pageId="37" pageNumber="38" type="lectotype">lectotype</typeStatus>
|
||
does not, as thermal springs in
|
||
<collectingCountry id="F3012FE26C4BFFA10473FD32FB51FD27" box="[1121,1225,664,689]" name="Germany" pageId="37" pageNumber="38">Germany</collectingCountry>
|
||
are a very different habitat than a waterfall in a desert in North America.
|
||
<taxonomicName id="4C1614F16C4BFFA102F1FD16FCCDFD43" authorityName="Mai, Johansen et Bohunicka" authorityYear="2018" box="[739,853,700,725]" class="Cyanobacteriia" family="Oculatellaceae" genus="Timaviella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Synechococcales" pageId="37" pageNumber="38" phylum="Cyanobacteria" rank="species" species="radians">
|
||
<emphasis id="B962B3606C4BFFA102F1FD16FCCDFD43" box="[739,853,700,725]" italics="true" pageId="37" pageNumber="38">T. radians</emphasis>
|
||
</taxonomicName>
|
||
and
|
||
<taxonomicName id="4C1614F16C4BFFA1039FFD16FBD8FD43" authorityName="Mai, Johansen et Bohunicka" authorityYear="2018" box="[909,1088,700,725]" class="Cyanobacteriia" family="Oculatellaceae" genus="Timaviella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Synechococcales" pageId="37" pageNumber="38" phylum="Cyanobacteria" rank="species" species="obliquedivisa">
|
||
<emphasis id="B962B3606C4BFFA1039FFD16FBD8FD43" box="[909,1088,700,725]" italics="true" pageId="37" pageNumber="38">T. obliquedivisa</emphasis>
|
||
</taxonomicName>
|
||
were similar in 16S rRNA gene sequence (96.45%,
|
||
<tableCitation id="C6945AC96C4BFFA1017AFD4AFE55FD6F" box="[360,461,736,761]" captionStart="TABLE 11" captionStartId="33.[136,224,1421,1444]" captionText="TABLE 11. 16S rRNA genetic similarity among Timaviella species." pageId="37" pageNumber="38">Table 11</tableCitation>
|
||
), had very similar lengths of conserved domains in the ITS region (
|
||
<tableCitation id="C6945AC96C4BFFA104F2FD4AFAA1FD6F" box="[1248,1337,736,761]" captionStart="TABLE 6" captionStartId="14.[136,224,161,184]" captionText="TABLE 6. Length of regions within the ITS structure of species within family Oculatellaceae." pageId="37" pageNumber="38">Table 6</tableCitation>
|
||
), and had similar ITS structures, but distinctive molecular and morphological features well separate the two species.
|
||
<taxonomicName id="4C1614F16C4BFFA10528FCAEFA34FC8B" authorityName="Mai, Johansen et Bohunicka" authorityYear="2018" box="[1338,1452,772,797]" class="Cyanobacteriia" family="Oculatellaceae" genus="Timaviella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Synechococcales" pageId="37" pageNumber="38" phylum="Cyanobacteria" rank="species" species="radians">
|
||
<emphasis id="B962B3606C4BFFA10528FCAEFA34FC8B" box="[1338,1452,772,797]" italics="true" pageId="37" pageNumber="38">T. radians</emphasis>
|
||
</taxonomicName>
|
||
has a markedly different structure in the D1-D1’, Box-B, and
|
||
<collectionCode id="ED07F7B76C4BFFA10326FC82FCD2FCD7" box="[820,842,808,833]" country="Canada" lsid="urn:lsid:biocol.org:col:13946" name="Royal British Columbia Museum - Herbarium" pageId="37" pageNumber="38" type="Museum">V</collectionCode>
|
||
3 helices than the earlier described species,
|
||
<taxonomicName id="4C1614F16C4BFFA1053FFC82FE0BFCF3" authority="Sciuto et al. (2017: 319" authorityName="Sciuto" authorityYear="2017" class="Cyanobacteriia" family="Oculatellaceae" genus="Timaviella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Synechococcales" pageId="37" pageNumber="38" phylum="Cyanobacteria" rank="species" species="circinata">
|
||
<emphasis id="B962B3606C4BFFA1053FFC82FA33FCD7" box="[1325,1451,808,833]" italics="true" pageId="37" pageNumber="38">T. circinata</emphasis>
|
||
<bibRefCitation id="EF8712836C4BFFA1009AFCE6FE0BFCF3" author="Sciuto, K. & Moschin, E. & Moro, I." box="[136,403,844,869]" pageId="37" pageNumber="38" pagination="285 - 323" refId="ref37019" refString="Sciuto, K., Moschin, E. & Moro, I. (2017) Cryptic cyanobacterial diversity in the Giant Cave (Trieste, Italy): the new genus Timaviella (Leptolyngbyaceae). Cryptogamie, Algologie 38: 285 - 323. https: // doi. org / 10.7872 / crya / v 38. iss 4.2017.285" type="journal article" year="2017">
|
||
Sciuto
|
||
<emphasis id="B962B3606C4BFFA100C5FCE6FE97FCF3" box="[215,271,844,869]" italics="true" pageId="37" pageNumber="38">et al.</emphasis>
|
||
(2017: 319
|
||
</bibRefCitation>
|
||
</taxonomicName>
|
||
, figs. 3–5) and
|
||
<taxonomicName id="4C1614F16C4BFFA10252FCE6FC50FCF3" authority="Sciuto et al. (2017: 319" authorityName="Sciuto" authorityYear="2017" box="[576,968,844,869]" class="Cyanobacteriia" family="Oculatellaceae" genus="Timaviella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Synechococcales" pageId="37" pageNumber="38" phylum="Cyanobacteria" rank="species" species="karstica">
|
||
<emphasis id="B962B3606C4BFFA10252FCE6FD2DFCF3" box="[576,693,844,869]" italics="true" pageId="37" pageNumber="38">T. karstica</emphasis>
|
||
<bibRefCitation id="EF8712836C4BFFA102AFFCE6FC50FCF3" author="Sciuto, K. & Moschin, E. & Moro, I." box="[701,968,844,869]" pageId="37" pageNumber="38" pagination="285 - 323" refId="ref37019" refString="Sciuto, K., Moschin, E. & Moro, I. (2017) Cryptic cyanobacterial diversity in the Giant Cave (Trieste, Italy): the new genus Timaviella (Leptolyngbyaceae). Cryptogamie, Algologie 38: 285 - 323. https: // doi. org / 10.7872 / crya / v 38. iss 4.2017.285" type="journal article" year="2017">
|
||
Sciuto
|
||
<emphasis id="B962B3606C4BFFA10319FCE6FCDCFCF3" box="[779,836,844,869]" italics="true" pageId="37" pageNumber="38">et al.</emphasis>
|
||
(2017: 319
|
||
</bibRefCitation>
|
||
</taxonomicName>
|
||
, figs. 3–5).
|
||
<taxonomicName id="4C1614F16C4BFFA1045EFCE6FB67FCF3" authorityName="Mai, Johansen et Bohunicka" authorityYear="2018" box="[1100,1279,844,869]" class="Cyanobacteriia" family="Oculatellaceae" genus="Timaviella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Synechococcales" pageId="37" pageNumber="38" phylum="Cyanobacteria" rank="species" species="obliquedivisa">
|
||
<emphasis id="B962B3606C4BFFA1045EFCE6FB67FCF3" box="[1100,1279,844,869]" italics="true" pageId="37" pageNumber="38">T. obliquedivisa</emphasis>
|
||
</taxonomicName>
|
||
and
|
||
<taxonomicName id="4C1614F16C4BFFA10527FCE6FF41FC1F" pageId="37" pageNumber="38">
|
||
<emphasis id="B962B3606C4BFFA10527FCE6FA33FCF3" box="[1333,1451,844,869]" italics="true" pageId="37" pageNumber="38">Timaviella</emphasis>
|
||
species
|
||
</taxonomicName>
|
||
WMT-WP7-
|
||
<collectionCode id="ED07F7B76C4BFFA10179FCDAFE3AFC1F" box="[363,418,880,905]" country="China" httpUri="http://biocol.org/urn:lsid:biocol.org:col:13690" lsid="urn:lsid:biocol.org:col:13690" name="Nanjing Institute of Geology and Paleontology, Academia Sinica" pageId="37" pageNumber="38" type="Herbarium">NPA</collectionCode>
|
||
collected from the White Mountains share 99.05% identity in the 16S rRNA gene (
|
||
<tableCitation id="C6945AC96C4BFFA1057EFCDAFF3BFC3B" captionStart="TABLE 11" captionStartId="33.[136,224,1421,1444]" captionText="TABLE 11. 16S rRNA genetic similarity among Timaviella species." pageId="37" pageNumber="38">Table 11</tableCitation>
|
||
) sequence, but are greatly different in the ITS region (p=18.3%,
|
||
<tableCitation id="C6945AC96C4BFFA1036CFC3EFC78FC3B" box="[894,992,916,941]" captionStart="TABLE 12" captionStartId="37.[136,224,1097,1120]" captionText="TABLE 12. ITS genetic similarity among Timaviella species." pageId="37" pageNumber="38">Table 12</tableCitation>
|
||
) and their ITS structures (
|
||
<figureCitation id="132D73F76C4BFFA1051AFC3EFAEDFC3B" box="[1288,1397,916,941]" captionStart-0="FIGURE 6" captionStart-1="FIGURE 7" captionStart-2="FIGURE 8" captionStart-3="FIGURE 9" captionStartId-0="15.[136,229,1976,1997]" captionStartId-1="17.[136,229,1928,1949]" captionStartId-2="18.[136,229,1187,1208]" captionStartId-3="19.[136,229,1958,1979]" captionTargetBox-0="[157,1425,273,1857]" captionTargetBox-1="[314,1274,759,1806]" captionTargetBox-2="[152,1434,425,1107]" captionTargetBox-3="[229,912,769,1871]" captionTargetId-0="figure-14@15.[151,1436,267,1882]" captionTargetId-1="figure-238@17.[311,1276,751,1831]" captionTargetId-2="figure-143@18.[151,1436,422,1162]" captionTargetId-3="figure-135@19.[151,1436,768,1875]" captionTargetPageId-0="15" captionTargetPageId-1="17" captionTargetPageId-2="18" captionTargetPageId-3="19" captionText-0="FIGURE 6. D1-D1’ stems of species described in Oculatellaceae.The stem structures of genera described previously in other publications (Oculatella, Thermoleptolyngbya, Timaviella) or in publications under provision (Trichotorquatus) are not shown here." captionText-1="FIGURE 7. Box B helices of species described in Oculatellaceae. The structures of genera described previously in other publications (Oculatella, Thermoleptolyngbya, Timaviella) or in publications under provision (Trichotorquatus) are not shown here." captionText-2="FIGURE 8. V2 helices of species described in Oculatellaceae. Several species do not have this structure, including Pegethrix convoluta, P. indistincta, Antartic Pegethrix species, Cartusia fontana¸ Kaiparowitsia implicata." captionText-3="FIGURE 9. V3 helices of species described in Oculatellaceae. All species described have this structure. The V3 helix of Cartusia aeruginosa is missing because we do not have the full length of its ITS region." figureDoi-0="http://doi.org/10.5281/zenodo.13704935" figureDoi-1="http://doi.org/10.5281/zenodo.13704937" figureDoi-2="http://doi.org/10.5281/zenodo.13704941" figureDoi-3="http://doi.org/10.5281/zenodo.13704943" httpUri-0="https://zenodo.org/record/13704935/files/figure.png" httpUri-1="https://zenodo.org/record/13704937/files/figure.png" httpUri-2="https://zenodo.org/record/13704941/files/figure.png" httpUri-3="https://zenodo.org/record/13704943/files/figure.png" pageId="37" pageNumber="38">Figs. 6–9</figureCitation>
|
||
). All
|
||
<taxonomicName id="4C1614F16C4BFFA1009AFC12FECFFC47" box="[136,343,952,977]" pageId="37" pageNumber="38">
|
||
<emphasis id="B962B3606C4BFFA1009AFC12FF66FC47" box="[136,254,952,977]" italics="true" pageId="37" pageNumber="38">Timaviella</emphasis>
|
||
species
|
||
</taxonomicName>
|
||
described to date are reported from wet rock faces in grottos or caves, although
|
||
<taxonomicName id="4C1614F16C4BFFA104F2FC12FAF8FC47" box="[1248,1376,952,977]" class="Cyanobacteriia" family="Oculatellaceae" genus="Timaviella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Synechococcales" pageId="37" pageNumber="38" phylum="Cyanobacteria" rank="species" species="circinata">
|
||
<emphasis id="B962B3606C4BFFA104F2FC12FAF8FC47" box="[1248,1376,952,977]" italics="true" pageId="37" pageNumber="38">T. circinata</emphasis>
|
||
</taxonomicName>
|
||
and
|
||
<taxonomicName id="4C1614F16C4BFFA10585FC12FF7AFC63" class="Cyanobacteriia" family="Oculatellaceae" genus="Timaviella" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Synechococcales" pageId="37" pageNumber="38" phylum="Cyanobacteria" rank="species" species="karstica">
|
||
<emphasis id="B962B3606C4BFFA10585FC12FF7AFC63" italics="true" pageId="37" pageNumber="38">T. karstica</emphasis>
|
||
</taxonomicName>
|
||
are from karstic rocks in an alpine region in the Italian Alps, while the species described in this paper are from sandstone seeps in the arid canyon country of
|
||
<collectingRegion id="49D2A1906C4BFFA1029EFBAAFD5DFB8F" box="[652,709,1024,1049]" country="United States of America" name="Utah" pageId="37" pageNumber="38">Utah</collectingRegion>
|
||
,
|
||
<collectingCountry id="F3012FE26C4BFFA102C3FBAAFC95FB8F" box="[721,781,1024,1049]" name="United States of America" pageId="37" pageNumber="38">USA</collectingCountry>
|
||
.
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |