203 lines
15 KiB
XML
203 lines
15 KiB
XML
<document id="2404BD8FF7BAF7C9CEEC89862E51A7F4" ID-DOI="10.3897/mycokeys.107.125549" ID-publisher-id="125549" URI-arpha="3EA0E723-E6FC-58B0-8491-ED4CC2FBAB87" XM.bibliography_approvedBy="admin" XM.materialsCitations_approvedBy="admin" XM.taxonomicNames_approvedBy="admin" XM.treatmentCitations_approvedBy="admin" XM.treatments_approvedBy="admin" article-type="research-article" checkinTime="1723223129036" checkinUser="pensoft" docAuthor="Tedersoo, Leho, Magurno, Franco, Alkahtani, Saad & Mikryukov, Vladimir" docDate="2024" docId="857DC24241B55BCD9ACAB042FC3E784D" docLanguage="en" docName="MycoKeys 107: 249-271" docOrigin="MycoKeys 107" docSource="https://mycokeys.pensoft.net/article/125549/download/xml/" docStyle="DocumentStyle:PensoftTaxPub.0000.journal_article.mycokeys" docStyleName="PensoftTaxPub.0000.journal_article.mycokeys" docTitle="Ruua coralieae Tedersoo 2024, sp. nov." docType="treatment" docVersion="3" dtd-version="3.0" lastPageNumber="271" masterDocId="3EA0E723E6FC58B08491ED4CC2FBAB87" masterDocTitle="Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes)" masterLastPageNumber="271" masterPageNumber="249" pageNumber="249" updateTime="1723229325626" updateUser="admin">
|
||
<mods:mods id="C5D96BBA7DE1BB763729428D57B763F6" xmlns:mods="http://www.loc.gov/mods/v3">
|
||
<mods:titleInfo id="A35B900BE3104EA08443D0F52059B571">
|
||
<mods:title id="16A264F40C0617251FB8E00E8531D893">Phylogenetic classification of arbuscular mycorrhizal fungi: new species and higher-ranking taxa in Glomeromycota and Mucoromycota (class Endogonomycetes)</mods:title>
|
||
</mods:titleInfo>
|
||
<mods:name id="2010E1BF6EFD12367B94894495ADAA00" type="personal">
|
||
<mods:role id="81B149824DAC64E1AB298D4FE2AD5A45">
|
||
<mods:roleTerm id="87B34797F273781838F86D84E153C630">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="93BF342711342E5F00F1434235E17945">Tedersoo, Leho</mods:namePart>
|
||
<mods:affiliation id="7F6A6BD98E6A51730AB39F9669F5BCAA">Mycology and Microbiology Center, University of Tartu, 2 Liivi, 50409 Tartu, Estonia & Department of Zoology, College of Science, King Saud University, 12371 Riyadh, Saudi Arabia</mods:affiliation>
|
||
</mods:name>
|
||
<mods:name id="92EE35F1DA89009E5CDC119CF0A5236F" type="personal">
|
||
<mods:role id="5EF40C7E22B19A8927908E4962549B1A">
|
||
<mods:roleTerm id="411E3A58D33757B671BCD889893225CC">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="BC8AAB154BA08D0EA9C534F32EC80972">Magurno, Franco</mods:namePart>
|
||
<mods:nameIdentifier id="1895792B2EF9580717AC286F9A0F6DCB" type="ORCID">0000-0002-3117-8149</mods:nameIdentifier>
|
||
<mods:affiliation id="E9883EF06EBE486D33D5BD9654DE194C">Institute of Biology, Biotechnology and Environmental Protection, Faculty of Natural Sciences, University of Silesia in Katowice, Jagiellońska 28, 40 - 032 Katowice, Poland</mods:affiliation>
|
||
</mods:name>
|
||
<mods:name id="3FF86F3309B475CC52EAD0B11EB83B11" type="personal">
|
||
<mods:role id="3CFC028C7B5A50F0EC9D2E87EA43F673">
|
||
<mods:roleTerm id="B29A96AA03ED6C19003FE67961F6B2F5">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="48F5B543441466C6BF610C91B7CB0990">Alkahtani, Saad</mods:namePart>
|
||
<mods:nameIdentifier id="5A21586522B02434B4034C7F72EB869F" type="ORCID">0000-0001-7381-5110</mods:nameIdentifier>
|
||
<mods:affiliation id="57B6EA43966775F80CFD1AAA85BF5DF5">Department of Zoology, College of Science, King Saud University, 12371 Riyadh, Saudi Arabia</mods:affiliation>
|
||
</mods:name>
|
||
<mods:name id="1679EED1B7EB6E5898AE04DB35D19CCA" type="personal">
|
||
<mods:role id="CDB63DC17515A03A3B1CA01E46565B9A">
|
||
<mods:roleTerm id="F12333AB583FACDA5A02D5DA656FF028">Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart id="4D71897D1A97A19ECE8FDE4B135F262D">Mikryukov, Vladimir</mods:namePart>
|
||
<mods:nameIdentifier id="F8D1917E233FD2B069C40AD41A44136F" type="ORCID">0000-0003-2786-2690</mods:nameIdentifier>
|
||
<mods:affiliation id="BA17717BA8771138FDB29ED634273251">Mycology and Microbiology Center, University of Tartu, 2 Liivi, 50409 Tartu, Estonia</mods:affiliation>
|
||
</mods:name>
|
||
<mods:typeOfResource id="825891E7E32C56632B0F5A05AC5E0C05">text</mods:typeOfResource>
|
||
<mods:relatedItem id="7604E20EA8A23E93E7E20369A092E1FE" type="host">
|
||
<mods:titleInfo id="CBFAC19BC91DFA58D134387304F17451">
|
||
<mods:title id="7A11581BC5B0AD1ADF10FFF6B65D3908">MycoKeys</mods:title>
|
||
</mods:titleInfo>
|
||
<mods:part id="4000E331CAA28B8EFF3724CBB49416B6">
|
||
<mods:date id="22BC0CAA5F176E61705F287C15A5FAC1">2024</mods:date>
|
||
<mods:detail id="D3A6A9B0E5D3F7B274D5B24B633F7228" type="pubDate">
|
||
<mods:number id="D01F5CB5DE5FDC4818DCBB52D995C1C9">2024-08-09</mods:number>
|
||
</mods:detail>
|
||
<mods:detail id="3F6173E6D0DA5B9A56295CB16EF5D96B" type="volume">
|
||
<mods:number id="B5BA063CF23F7412D34710F2A24BE2FF">107</mods:number>
|
||
</mods:detail>
|
||
<mods:extent id="0D75C177D9EDEB2DDADA6E23CE241DF7" unit="page">
|
||
<mods:start id="771B139C14B5D356EBF1DA4A24F62C91">249</mods:start>
|
||
<mods:end id="BBDE5ABFFCBFD3A271EB802B8ABBF77D">271</mods:end>
|
||
</mods:extent>
|
||
</mods:part>
|
||
</mods:relatedItem>
|
||
<mods:classification id="6E4A8E31010D17D1C7ADD6973723D239">journal article</mods:classification>
|
||
<mods:identifier id="6E91646B7262792CA70F60A96AF09910" type="DOI">10.3897/mycokeys.107.125549</mods:identifier>
|
||
</mods:mods>
|
||
<treatment id="857DC24241B55BCD9ACAB042FC3E784D" ID-DOI="http://doi.org/10.5281/zenodo.13286575" ID-Zenodo-Dep="13286575" ID-arpha="857DC242-41B5-5BCD-9ACA-B042FC3E784D" ID-mycobank="853619" LSID="urn:lsid:plazi:treatment:857DC24241B55BCD9ACAB042FC3E784D" httpUri="http://treatment.plazi.org/id/857DC24241B55BCD9ACAB042FC3E784D">
|
||
<subSubSection id="BA2D42A2609B5D1A1E07C41505290405" type="nomenclature">
|
||
<paragraph id="54F495376950EF6EA97529E34FCC3227">
|
||
<taxonomicName id="8CBEF13FC821094803980309282F6C65" authority="Tedersoo" authorityName="Tedersoo" authorityYear="2024" class="Magnoliopsida" family="Ruuaceae" genus="Ruua" kingdom="Fungi" order="Ruuales" phylum="Tracheophyta" rank="species" species="coralieae" status="sp. nov.">
|
||
<emphasis id="B3E050CA62D6E82D13BD0BC58DF42156" italics="true">Ruua coralieae</emphasis>
|
||
Tedersoo
|
||
</taxonomicName>
|
||
<taxonomicNameLabel id="F11BA24F28D4B26803A3964B97A558D2" rank="species">sp. nov.</taxonomicNameLabel>
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="SECID0E42CK" type="diagnosis">
|
||
<paragraph id="9D929696F608A3F8ED598F5FE52440EE">
|
||
<heading id="5B4B2F585B1C96AA91F02F0D1A59D239" reason="title">Diagnosis.</heading>
|
||
</paragraph>
|
||
<paragraph id="AA5F49505F0D40503A77024D7DD15F5F">
|
||
Separation from other species of
|
||
<taxonomicName id="D0EB45CC0FF5C54E7857E1A924F2967D" class="Magnoliopsida" family="Dipterocarpaceae" genus="Ruua" kingdom="Plantae" order="Malvales" phylum="Tracheophyta" rank="genus">
|
||
<emphasis id="99196EA74ED81C35A3BCDE7A606F220A" italics="true">Ruua</emphasis>
|
||
</taxonomicName>
|
||
based on the
|
||
<abbrev id="ABBRID0EK3CK" xlink_title="internal transcribed spacer">ITS</abbrev>
|
||
region (positions 217–243 gaaaaaaaaagaaaggaaagaaaaggt; one mismatch allowed) and LSU (positions 470–489 tagtgcacttgctttcgcac; no mismatch allowed) as indicated in Fig.
|
||
<figureCitation id="FDA99E3D38FBCA8996AB563B922590C9" captionStart="Figure 15" captionStartId="F15" captionText="Figure 15. Diagnostic barcodes for Ruua coralieae relative to closely-related taxa in ITS 2 and LSU." figureDoi="10.3897/mycokeys.107.125549.figure15" httpUri="https://binary.pensoft.net/fig/1111402">15</figureCitation>
|
||
.
|
||
</paragraph>
|
||
<caption id="B3B9FF5C78360E4AF863E9D9BA03DB98" ID-DOI="10.3897/mycokeys.107.125549.figure15" ID-arpha="8F0E4F14-EBA1-5B4B-9826-CCD4DC79CCD3" httpUri="https://binary.pensoft.net/fig/1111402" startId="F15">
|
||
<paragraph id="90167AB9800750F4251DE58DE5FD476C">
|
||
<label id="6EF5BA41E1215D58B43F8C13B3B08F52">Figure 15.</label>
|
||
</paragraph>
|
||
<paragraph id="BCF9A0E0B208C20918F219065F73C96B">
|
||
Diagnostic barcodes for
|
||
<taxonomicName id="68F259955BD9FE88362C25169D6A45F6" class="Magnoliopsida" family="Dipterocarpaceae" genus="Ruua" kingdom="Plantae" order="Malvales" phylum="Tracheophyta" rank="species" species="coralieae">
|
||
<emphasis id="CD74F63E3B17A79978EFD3EFCA14E3BB" italics="true">Ruua coralieae</emphasis>
|
||
</taxonomicName>
|
||
relative to closely-related taxa in ITS 2 and LSU.
|
||
</paragraph>
|
||
</caption>
|
||
</subSubSection>
|
||
<subSubSection id="SECID0EK4CK" type="material">
|
||
<paragraph id="F5400D37CBC05AB1339A6F71206C5619">
|
||
<heading id="5881D2CFF2C1EF0E4BD20BD745D72701" reason="title">Type.</heading>
|
||
</paragraph>
|
||
<paragraph id="D6ADF325DF91FDF8785FA6353C3723E4">
|
||
<materialsCitation id="634B8A9E6A9BFC27B2477DCEC7CC49F9" collectedFrom="Quercus robur forest" collectionCode="TUE, EUK" country="Estonia" latitude="59.45059" location="Ruu" longLatPrecision="1" longitude="25.22166" specimenCode="TUE 101598, EUK 1603424" specimenCount="1" typeStatus="holotype">
|
||
<abbrev id="ABBRID0EQ4CK" xlink_title="environmental DNA">eDNA</abbrev>
|
||
sample
|
||
<specimenCode id="2F49B33C786F384655AAFECBB127FB0D">TUE 101598</specimenCode>
|
||
(
|
||
<emphasis id="FA694C84186CAF0686FFB337FF39A4CB" bold="true" italics="true">
|
||
<typeStatus id="0FDBE066153A6A40EDBBFC96D2C85710" type="holotype">holotype</typeStatus>
|
||
</emphasis>
|
||
);
|
||
<abbrev id="ABBRID0EX4CK" xlink_title="environmental DNA">eDNA</abbrev>
|
||
sequence
|
||
<specimenCode id="4ABE0FB8C44D397874D3A5425D3A5F50">EUK 1603424</specimenCode>
|
||
;
|
||
<abbrev id="ABBRID0E24CK" xlink_title="Global Soil Mycobiome consortium">GSMc</abbrev>
|
||
plot G 4464,
|
||
<collectedFrom id="7A362EF6B0EFF2A2829F6F751DF80BA9">
|
||
<taxonomicName id="59610E83E4FB503F53701F9D7FD5319B" class="Magnoliopsida" family="Fagaceae" genus="Quercus" kingdom="Plantae" order="Fagales" phylum="Tracheophyta" rank="species" species="robur">
|
||
<emphasis id="6790985711CBFD522C8BA9DC99D834E7" italics="true">Quercus robur</emphasis>
|
||
</taxonomicName>
|
||
forest
|
||
</collectedFrom>
|
||
(soil sample
|
||
<specimenCode id="4DDB4861F949D7E251437B88CA085A6B">TUE 101598</specimenCode>
|
||
) in
|
||
<location id="FA9BEEFDA14C7A9AB1AF7DB48A3E6A58" LSID="urn:lsid:plazi:treatment:857DC24241B55BCD9ACAB042FC3E784D:FA9BEEFDA14C7A9AB1AF7DB48A3E6A58" country="Estonia" latitude="59.45059" longLatPrecision="1" longitude="25.22166" name="Ruu">Ruu</location>
|
||
,
|
||
<collectingCountry id="9F161D8BEF275B825604DF16399F26FB" name="Estonia">Estonia</collectingCountry>
|
||
,
|
||
<named-content content-type="dwc:verbatimCoordinates" id="NCID0ET5CK" specific-use="{"type":"Point","coordinates":[25.221660,59.450590]}">
|
||
<geoCoordinate id="F68F847AE992A7A4424842AC9A720AC5" degrees="59.45059" direction="north" orientation="latitude" precision="1" value="59.45059">59.45059 ° N</geoCoordinate>
|
||
,
|
||
<geoCoordinate id="FA487EDFDDA1657FE416D922F38FD38D" degrees="25.22166" direction="east" orientation="longitude" precision="1" value="25.22166">25.22166 ° E</geoCoordinate>
|
||
</named-content>
|
||
</materialsCitation>
|
||
.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="SECID0EY5CK" type="description">
|
||
<paragraph id="B617CA45CFE66014C91A041C883C3060">
|
||
<heading id="3BB56E47CAB09D01DF2ED03B27642B5D" reason="title">Description.</heading>
|
||
</paragraph>
|
||
<paragraph id="1AE8E03653CA53D708FFA35C9D27BFE3">
|
||
Other sequences: EUK 1602853 and EUK 1600135 (type locality); EUK 1604050 (
|
||
<abbrev id="ABBRID0E55CK" xlink_title="Global Soil Mycobiome consortium">GSMc</abbrev>
|
||
plot G 5002,
|
||
<emphasis id="5F031AC131932B40593A1C1D6F4BAC69" italics="true">
|
||
<taxonomicName id="6D7819FB7CCAB8AF18BFBF2C31DB6C21" class="Magnoliopsida" family="Malvaceae" genus="Tilia" kingdom="Plantae" order="Malvales" phylum="Tracheophyta" rank="genus">Tilia</taxonomicName>
|
||
-
|
||
<taxonomicName id="F756A4485295303F5258D135948C0DC3" class="Magnoliopsida" family="Fagaceae" genus="Quercus" kingdom="Plantae" order="Fagales" phylum="Tracheophyta" rank="genus">Quercus</taxonomicName>
|
||
</emphasis>
|
||
forest soil in Naissaar,
|
||
<collectingCountry id="9640539CC1335712C04D434E9FB3CAED" name="Estonia">Estonia</collectingCountry>
|
||
,
|
||
<named-content content-type="dwc:verbatimCoordinates" id="NCID0EM6CK" specific-use="{"type":"Point","coordinates":[24.535900,59.575300]}">
|
||
<geoCoordinate id="58F9C0D2B37FE8EF47CDAFF48056D63E" degrees="59.57530" direction="north" orientation="latitude" precision="1" value="59.5753">59.57530 ° N</geoCoordinate>
|
||
,
|
||
<geoCoordinate id="AC5A904D2F6939D2F78D8D42883F2195" degrees="24.53590" direction="east" orientation="longitude" precision="1" value="24.5359">24.53590 ° E</geoCoordinate>
|
||
</named-content>
|
||
); and EUK 1604051 (
|
||
<abbrev id="ABBRID0ER6CK" xlink_title="Global Soil Mycobiome consortium">GSMc</abbrev>
|
||
plot S 480,
|
||
<emphasis id="1BDFD8CC29B58865FA8376894B0E5566" italics="true">
|
||
<taxonomicName id="D2F6EB87A4A035047F13575C7D606424" class="Magnoliopsida" family="Salicaceae" genus="Populus" kingdom="Plantae" order="Malpighiales" phylum="Tracheophyta" rank="genus">Populus</taxonomicName>
|
||
-
|
||
<taxonomicName id="CAA354F5B70F6A2B8FAC67AB67BAAED8" class="Pinopsida" family="Pinaceae" genus="Picea" kingdom="Plantae" order="Pinales" phylum="Tracheophyta" rank="genus">Picea</taxonomicName>
|
||
</emphasis>
|
||
forest soil in Käru,
|
||
<collectingCountry id="539247EDC917A6AED0D279C424328CAB" name="Estonia">Estonia</collectingCountry>
|
||
,
|
||
<named-content content-type="dwc:verbatimCoordinates" id="NCID0E66CK" specific-use="{"type":"Point","coordinates":[25.222490,58.804070]}">
|
||
<geoCoordinate id="432113C8B82DDE7587223D8051DD0258" degrees="58.80407" direction="north" orientation="latitude" precision="1" value="58.80407">58.80407 ° N</geoCoordinate>
|
||
,
|
||
<geoCoordinate id="0A55D13124759992A34E46C17766B430" degrees="25.22249" direction="east" orientation="longitude" precision="1" value="25.22249">25.22249 ° E</geoCoordinate>
|
||
</named-content>
|
||
).
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="SECID0EEADK" type="etymology">
|
||
<paragraph id="BA1CA83C726AD74EF54DADA79FFD0F4F">
|
||
<heading id="A163A498D80E3958E69413ED7FDDE281" reason="title">Etymology.</heading>
|
||
</paragraph>
|
||
<paragraph id="251C800BF96C415CB191EB01B2934549">
|
||
<emphasis id="FA2FCBD5BEB553AF2896F0EA4F98F0F1" italics="true">Ruu</emphasis>
|
||
(Estonian) refers to type locality; and
|
||
<emphasis id="FE1B50BE9493297166EA151964B04278" italics="true">Coralie</emphasis>
|
||
(French) refers to the first name of Coralie Damon, who collected the first materials belonging to this genus.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="SECID0E5ADK" type="notes">
|
||
<paragraph id="05F22BF26682D404CB4B4870B098CD87">
|
||
<heading id="E95A57A326E02D2DA00CB5ED0B256B4A" reason="title">Notes.</heading>
|
||
</paragraph>
|
||
<paragraph id="6BFFD0198806ABC3838C233D36EEEE2C">
|
||
Found from three sites in
|
||
<collectingCountry id="59C8340636C05B53EADF3B69B817C26C" name="Estonia">Estonia</collectingCountry>
|
||
, with
|
||
<abbrev id="ABBRID0EEBDK" xlink_title="internal transcribed spacer">ITS</abbrev>
|
||
and LSU sequences displaying up to 0.3 % differences.
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |