267 lines
24 KiB
XML
267 lines
24 KiB
XML
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<mods:title id="39580FE793D02BC40635A39B38E1C3FC">Phylogenomics of Characidae, a hyper-diverse Neotropical freshwater fish lineage, with a phylogenetic classification including four families (Teleostei: Characiformes)</mods:title>
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<mods:namePart id="DF2C89158B54471EE120AFA5AE3D2BA7">Melo, Bruno F</mods:namePart>
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<mods:namePart id="E4EE0300C53383EAC625BD79744555FD">Mattox, George M T</mods:namePart>
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<mods:namePart id="81AF1312FBEFBED6AF24F5CC7000101C">Faria, Tiago C</mods:namePart>
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<mods:namePart id="A02BC4DC576A8FDF2EBD7BCD1C9FEC29">Near, Thomas J</mods:namePart>
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<mods:namePart id="B5462A1E0F3276A85085A766A967CF7C">Oliveira, Claudio</mods:namePart>
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<mods:date id="2DDC48CB5F610D57D26550CED33123F4">2024</mods:date>
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<taxonomicName id="4C7B4D3FFF89C007FEE5F9FBC5D6BC90" authority="Gill, 1858" authorityName="Gill" authorityYear="1858" box="[258,389,419,445]" family="Stevardiidae" pageId="7" pageNumber="8" rank="family">Stevardiidae</taxonomicName>
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Gill, 1858, new usage
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</emphasis>
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<emphasis id="B90FEAAEFF89C007FF96F981C518BCDC" box="[113,331,473,497]" italics="true" pageId="7" pageNumber="8">
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<typeStatus id="54C0881EFF89C007FF96F981C4F2BCDD" box="[113,161,473,496]" pageId="7" pageNumber="8">Type</typeStatus>
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genus: Steroardia
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</emphasis>
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Gill, 1858, junior synonym of
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<taxonomicName id="4C7B4D3FFF89C007FD9DF981C484BF3D" authority="Gill, 1858" authorityName="Gill" authorityYear="1858" family="Characidae" genus="Corynopoma" kingdom="Animalia" order="Characiformes" pageId="7" pageNumber="8" phylum="Chordata" rank="genus">
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<emphasis id="B90FEAAEFF89C007FD9DF981C6A9BCDD" box="[634,762,473,496]" italics="true" pageId="7" pageNumber="8">Corynopoma</emphasis>
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Gill, 1858
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</taxonomicName>
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.
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<paragraph id="8BC436BCFF89C007FF96FA7FC530BF50" blockId="7.[113,762,551,637]" pageId="7" pageNumber="8">
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<emphasis id="B90FEAAEFF89C007FF96FA7FC56DBF12" box="[113,318,551,575]" italics="true" pageId="7" pageNumber="8">Included subfamilies:</emphasis>
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Argopleurinae, Creagrutinae,
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<taxonomicName id="4C7B4D3FFF89C007FD91FA7FC6A5BF12" box="[630,758,551,575]" pageId="7" pageNumber="8" rank="subFamily" subFamily="Diapominae">Diapominae</taxonomicName>
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,
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<taxonomicName id="4C7B4D3FFF89C007FF96FA1EC57DBF73" authorityName="Eigenmann" authorityYear="1914" box="[113,302,582,606]" family="Characidae" kingdom="Animalia" order="Characiformes" pageId="7" pageNumber="8" phylum="Chordata" rank="subFamily" subFamily="Glandulocaudinae">Glandulocaudinae</taxonomicName>
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, Hemibryconinae, Landoninae, Planaltininae, and Xenurobryconinae.
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</paragraph>
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<paragraph id="8BC436BCFF89C007FF96FACCC646BE04" blockId="7.[113,763,660,809]" pageId="7" pageNumber="8">
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<emphasis id="B90FEAAEFF89C007FF96FACCC489BF81" box="[113,218,660,684]" italics="true" pageId="7" pageNumber="8">Definition:</emphasis>
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The least inclusive crown clade that contains
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<taxonomicName id="4C7B4D3FFF89C007FD7BFACCC5ABBFE6" authority="Eigenmann and Henn, 1914" authorityName="Eigenmann and Henn" authorityYear="1914" family="Characidae" genus="Landonia" kingdom="Animalia" order="Characiformes" pageId="7" pageNumber="8" phylum="Chordata" rank="species" species="latidens">
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<emphasis id="B90FEAAEFF89C007FD7BFACCC4EFBFE6" italics="true" pageId="7" pageNumber="8">Landonia latidens</emphasis>
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Eigenmann and Henn, 1914
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</taxonomicName>
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,
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<taxonomicName id="4C7B4D3FFF89C007FDEEFAECC4F6BFC7" authority="Gill, 1858" authorityName="Gill" authorityYear="1858" family="Characidae" genus="Corynopoma" kingdom="Animalia" order="Characiformes" pageId="7" pageNumber="8" phylum="Chordata" rank="species" species="riisei">
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<emphasis id="B90FEAAEFF89C007FDEEFAECC691BFE6" box="[521,706,692,715]" italics="true" pageId="7" pageNumber="8">Corynopoma riisei</emphasis>
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Gill, 1858
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</taxonomicName>
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, and
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<taxonomicName id="4C7B4D3FFF89C007FF07FA8BC646BFC6" authority="Myers" authorityName="Myers" box="[224,533,723,747]" family="Characidae" genus="Xenurobrycon" kingdom="Animalia" order="Characiformes" pageId="7" pageNumber="8" phylum="Chordata" rank="species" species="macropus">
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<emphasis id="B90FEAAEFF89C007FF07FA8BC59DBFC7" box="[224,462,723,747]" italics="true" pageId="7" pageNumber="8">Xenurobrycon macropus</emphasis>
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Myers
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</taxonomicName>
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and
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<collectingRegion id="49BFF85EFF89C007FDADFA8BC6F2BFC6" box="[586,673,723,747]" country="Venezuela" name="Miranda" pageId="7" pageNumber="8">Miranda</collectingRegion>
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Ribeiro, 1945. This is a minimum-crown-clade definition. See
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<figureCitation id="13402A39FF89C007FD44FAAAC6A9BE27" box="[675,762,754,778]" captionStart="Figure 3" captionStartId="6.[129,194,1842,1866]" captionTargetBox="[244,1358,150,1808]" captionTargetId="figure-6@6.[241,1361,147,1811]" captionTargetPageId="6" captionText="Figure 3. Phylogeny of Spintherobolidae and Stevardiidae and subfamilies Landoninae, Xenurobryconinae, Glandulocaudinae, Argopleurinae, Hemibryconinae, Stevardiinae, Planaltininae, Creagrutinae, and Diapominae based on 1348 nuclear loci of ultraconserved elements" figureDoi="http://doi.org/10.5281/zenodo.13785456" httpUri="https://zenodo.org/record/13785456/files/figure.png" pageId="7" pageNumber="8">Figure 3</figureCitation>
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for a reference phylogeny of
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<taxonomicName id="4C7B4D3FFF89C007FE76FB49C642BE04" box="[401,529,785,809]" family="Stevardiidae" pageId="7" pageNumber="8" rank="family">Stevardiidae</taxonomicName>
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.
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</paragraph>
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<emphasis id="B90FEAAEFF89C007FF96FB18C503BE75" box="[113,336,832,856]" italics="true" pageId="7" pageNumber="8">Etymology: Steroardia</emphasis>
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Gill, 1858 is a patronym of D. Jackson Steward (1816-1898).
|
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</paragraph>
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<paragraph id="8BC436BCFF89C007FF96FBC1C604B940" blockId="7.[113,763,921,1791]" pageId="7" pageNumber="8">
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<emphasis id="B90FEAAEFF89C007FF96FBC1C49CBE9C" box="[113,207,921,945]" italics="true" pageId="7" pageNumber="8">Remarks:</emphasis>
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Synapomorphies for
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<taxonomicName id="4C7B4D3FFF89C007FE22FBC1C611BE9C" box="[453,578,921,945]" family="Stevardiidae" pageId="7" pageNumber="8" rank="family">Stevardiidae</taxonomicName>
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include a short frontal fontanel, up to two-thirds the length of the parietal fontanel, ventral margin of anguloarticular crossing perpendicularly to the dentary laterosensory canal, four teeth in the inner premaxillary row, and ectopterygoid expanded laterally to the blade of the lateral ethmoid (
|
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<bibRefCitation id="EFEA4B4DFF89C007FEBDFC6DC5B9B960" author="Mirande JM" box="[346,490,1077,1101]" pageId="7" pageNumber="8" pagination="282 - 300" refId="ref32677" refString="Mirande JM. Morphology, molecules and the phylogeny of Characidae (Teleostei: Characiformes). Cladistics 2019; 35: 282 - 300. hups: // doi. org / 10.1111 / cla. 12345" type="journal article" year="2019">Mirande 2019</bibRefCitation>
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||
); reversals in all characters are observed in several species (
|
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<bibRefCitation id="EFEA4B4DFF89C007FE52FC0CC615B940" author="Mirande JM" box="[437,582,1108,1133]" pageId="7" pageNumber="8" pagination="282 - 300" refId="ref32677" refString="Mirande JM. Morphology, molecules and the phylogeny of Characidae (Teleostei: Characiformes). Cladistics 2019; 35: 282 - 300. hups: // doi. org / 10.1111 / cla. 12345" type="journal article" year="2019">Mirande 2019</bibRefCitation>
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||
).
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||
</paragraph>
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||
<paragraph id="8BC436BCFF89C007FF6AFC2CC657BBD2" blockId="7.[113,763,921,1791]" pageId="7" pageNumber="8">
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Eigenmann(1914) proposedthesubfamilyGlandulocaudinae for characids with a gland in caudal fins of mature males (e.g.
|
||
<taxonomicName id="4C7B4D3FFF89C007FF96FCEBC4A2B9E7" authorityName="Gill" authorityYear="1858" box="[113,241,1203,1226]" family="Characidae" genus="Corynopoma" kingdom="Animalia" order="Characiformes" pageId="7" pageNumber="8" phylum="Chordata" rank="genus">
|
||
<emphasis id="B90FEAAEFF89C007FF96FCEBC4A2B9E7" box="[113,241,1203,1226]" italics="true" pageId="7" pageNumber="8">Corynopoma</emphasis>
|
||
</taxonomicName>
|
||
). Weitzman
|
||
<emphasis id="B90FEAAEFF89C007FE99FCEBC5FFB9E7" box="[382,428,1202,1226]" italics="true" pageId="7" pageNumber="8">et al</emphasis>
|
||
. (2005) delimited
|
||
<taxonomicName id="4C7B4D3FFF89C007FD9AFCEAC6A9B9E7" box="[637,762,1202,1226]" family="Characidae" kingdom="Animalia" order="Characiformes" pageId="7" pageNumber="8" phylum="Chordata" rank="subFamily" subFamily="Stevardiinae">Stevardiinae</taxonomicName>
|
||
as a lineage distinct from Eigenmann’s
|
||
<taxonomicName id="4C7B4D3FFF89C007FDEDFC8AC694B9C7" authorityName="Eigenmann" authorityYear="1914" box="[522,711,1234,1258]" family="Characidae" kingdom="Animalia" order="Characiformes" pageId="7" pageNumber="8" phylum="Chordata" rank="subFamily" subFamily="Glandulocaudinae">Glandulocaudinae</taxonomicName>
|
||
, and Mirande (2010) on the basis of three synapomorphies merged the two groups under the name
|
||
<taxonomicName id="4C7B4D3FFF89C007FE36FD48C602B805" box="[465,593,1296,1320]" family="Characidae" kingdom="Animalia" order="Characiformes" pageId="7" pageNumber="8" phylum="Chordata" rank="subFamily" subFamily="Stevardiinae">Stevardiinae</taxonomicName>
|
||
. Malabarba and Weitzman (2003) identified a monophyletic group they named Clade A, which contained the
|
||
<taxonomicName id="4C7B4D3FFF89C007FE53FD17C622B84A" authorityName="Eigenmann" authorityYear="1914" box="[436,625,1359,1383]" family="Characidae" kingdom="Animalia" order="Characiformes" pageId="7" pageNumber="8" phylum="Chordata" rank="subFamily" subFamily="Glandulocaudinae">Glandulocaudinae</taxonomicName>
|
||
,
|
||
<taxonomicName id="4C7B4D3FFF89C007FD9AFD17C5FBB8AA" authority="(sensu Weitzman et al. 2005)" baseAuthorityName="Weitzman" baseAuthorityYear="2005" family="Characidae" kingdom="Animalia" order="Characiformes" pageId="7" pageNumber="8" phylum="Chordata" rank="subFamily" subFamily="Stevardiinae">
|
||
Stevardiinae (
|
||
<emphasis id="B90FEAAEFF89C007FF9BFD37C4FCB8AB" box="[124,175,1391,1414]" italics="true" pageId="7" pageNumber="8">sensu</emphasis>
|
||
Weitzman
|
||
<emphasis id="B90FEAAEFF89C007FECBFD37C50AB8AB" box="[300,345,1390,1414]" italics="true" pageId="7" pageNumber="8">et al</emphasis>
|
||
. 2005)
|
||
</taxonomicName>
|
||
, and 18 additional genera considered
|
||
<emphasis id="B90FEAAEFF89C007FF58FDD6C56FB88B" box="[191,316,1422,1446]" italics="true" pageId="7" pageNumber="8">incertae sedis</emphasis>
|
||
within
|
||
<taxonomicName id="4C7B4D3FFF89C007FE62FDD6C5A8B88B" authorityName="Latreille" authorityYear="1825" box="[389,507,1422,1446]" family="Characidae" kingdom="Animalia" order="Characiformes" pageId="7" pageNumber="8" phylum="Chordata" rank="family">Characidae</taxonomicName>
|
||
. The monophyly of Clade A has been supported in phylogenetic analyses using morphological (Mirande 2010, Baicere-Silva
|
||
<emphasis id="B90FEAAEFF89C007FE11FD95C672B8C9" box="[502,545,1484,1508]" italics="true" pageId="7" pageNumber="8">et al</emphasis>
|
||
. 2011, Ferreira
|
||
<emphasis id="B90FEAAEFF89C007FD2EFD95C6A7B8C9" box="[713,756,1484,1508]" italics="true" pageId="7" pageNumber="8">et al</emphasis>
|
||
. 2011,
|
||
<bibRefCitation id="EFEA4B4DFF89C007FF56FDB4C524BB29" author="Mirande JM & Aguilera G & Azpelicueta M" box="[177,375,1516,1540]" pageId="7" pageNumber="8" pagination="1 - 20" refId="ref32715" refString="Mirande JM, Aguilera G, Azpelicueta M. A threatened new species of Oligosarcus and its phylogenetic relationships, with comments of Astyanacinus (Teleostei: Characidae). Zootaxa 2011; 2994: 1 - 20." type="journal article" year="2011">
|
||
Mirande
|
||
<emphasis id="B90FEAAEFF89C007FEE9FDB4C564BB29" box="[270,311,1516,1540]" italics="true" pageId="7" pageNumber="8">et al</emphasis>
|
||
. 2011
|
||
</bibRefCitation>
|
||
), multilocus (Calcagnotto
|
||
<emphasis id="B90FEAAEFF89C007FD6BFDB4C6E6BB29" box="[652,693,1516,1540]" italics="true" pageId="7" pageNumber="8">et al</emphasis>
|
||
. 2005, Javonillo
|
||
<emphasis id="B90FEAAEFF89C007FF35FE54C4AFBB0E" box="[210,252,1547,1571]" italics="true" pageId="7" pageNumber="8">et al</emphasis>
|
||
. 2010,
|
||
<bibRefCitation id="EFEA4B4DFF89C007FEADFE53C65DBB0E" author="Oliveira C & Avelino GS & Abe KT" box="[330,526,1547,1571]" pageId="7" pageNumber="8" pagination="1 - 25" refId="ref33245" refString="Oliveira C, Avelino GS, Abe KT et al. Phylogenetic relationships within the speciose family Characidae (Teleostei: Ostariophysi: Characiformes) based on multilocus analysis and extensive ingroup sampling. BMC Eoolutionary Biology 2011; 11: 1 - 25." type="journal article" year="2011">
|
||
Oliveira
|
||
<emphasis id="B90FEAAEFF89C007FE44FE54C59EBB0E" box="[419,461,1547,1571]" italics="true" pageId="7" pageNumber="8">et al</emphasis>
|
||
. 2011
|
||
</bibRefCitation>
|
||
, Mariguela
|
||
<emphasis id="B90FEAAEFF89C007FD6DFE54C6E7BB0E" box="[650,692,1547,1571]" italics="true" pageId="7" pageNumber="8">et al</emphasis>
|
||
. 2013,
|
||
<bibRefCitation id="EFEA4B4DFF89C007FF96FE73C510BB6F" author="Nomaz AT & Arcila D & Orti G" box="[113,323,1578,1603]" pageId="7" pageNumber="8" pagination="1 - 25" refId="ref35300" refString="Nomaz AT, Arcila D, Orti G et al. Molecular phylogeny of the subfamily Stevardiinae Gill, 1858 (Characiformes: Characidae): classification and the evolution of reproductive traits. BMC Eoolutionary Biology 2015; 15: 1 - 25." type="journal article" year="2015">
|
||
Thomaz
|
||
<emphasis id="B90FEAAEFF89C007FF37FE73C4ADBB6E" box="[208,254,1579,1603]" italics="true" pageId="7" pageNumber="8">et al</emphasis>
|
||
. 2015
|
||
</bibRefCitation>
|
||
), combined multilocus and morphology (
|
||
<bibRefCitation id="EFEA4B4DFF89C007FF9BFE12C542BB4F" author="Mirande JM" box="[124,273,1610,1634]" pageId="7" pageNumber="8" pagination="282 - 300" refId="ref32677" refString="Mirande JM. Morphology, molecules and the phylogeny of Characidae (Teleostei: Characiformes). Cladistics 2019; 35: 282 - 300. hups: // doi. org / 10.1111 / cla. 12345" type="journal article" year="2019">Mirande 2019</bibRefCitation>
|
||
, Ferreira
|
||
<emphasis id="B90FEAAEFF89C007FE9DFE13C5F5BB4F" box="[378,422,1610,1634]" italics="true" pageId="7" pageNumber="8">et al</emphasis>
|
||
. 2021), and phylogenomic data (
|
||
<collectingCountry id="F36C762CFF89C007FF9BFE31C4EABBAC" box="[124,185,1641,1665]" name="Morocco" pageId="7" pageNumber="8">Arcila</collectingCountry>
|
||
<emphasis id="B90FEAAEFF89C007FF27FE32C4A1BBAC" box="[192,242,1641,1665]" italics="true" pageId="7" pageNumber="8">et al.</emphasis>
|
||
2017, Betancur-R.
|
||
<emphasis id="B90FEAAEFF89C007FE5AFE32C5B4BBAC" box="[445,487,1641,1665]" italics="true" pageId="7" pageNumber="8">et al</emphasis>
|
||
. 2019, Melo
|
||
<emphasis id="B90FEAAEFF89C007FD93FE32C6F6BBAC" box="[628,677,1641,1665]" italics="true" pageId="7" pageNumber="8">et al.</emphasis>
|
||
2022a). We have elevated
|
||
<taxonomicName id="4C7B4D3FFF89C007FEC9FED1C5F8BB8C" box="[302,427,1673,1697]" family="Stevardiidae" pageId="7" pageNumber="8" rank="family">Stevardiidae</taxonomicName>
|
||
to a family level with nine subfamilies: Landoninae, Xenurobryconinae,
|
||
<taxonomicName id="4C7B4D3FFF89C007FDDEFEF0C6A5BBED" authorityName="Eigenmann" authorityYear="1914" box="[569,758,1704,1728]" family="Characidae" kingdom="Animalia" order="Characiformes" pageId="7" pageNumber="8" phylum="Chordata" rank="subFamily" subFamily="Glandulocaudinae">Glandulocaudinae</taxonomicName>
|
||
, Argopleurinae, Hemibryconinae,
|
||
<taxonomicName id="4C7B4D3FFF89C007FE3AFE9FC60FBBF2" box="[477,604,1735,1759]" family="Characidae" kingdom="Animalia" order="Characiformes" pageId="7" pageNumber="8" phylum="Chordata" rank="subFamily" subFamily="Stevardiinae">Stevardiinae</taxonomicName>
|
||
, Planaltininae, Creagrutinae, and Diapominae (
|
||
<figureCitation id="13402A39FF89C007FE5CFEBFC5A0BBD2" box="[443,499,1767,1791]" captionStart="Figure 3" captionStartId="6.[129,194,1842,1866]" captionTargetBox="[244,1358,150,1808]" captionTargetId="figure-6@6.[241,1361,147,1811]" captionTargetPageId="6" captionText="Figure 3. Phylogeny of Spintherobolidae and Stevardiidae and subfamilies Landoninae, Xenurobryconinae, Glandulocaudinae, Argopleurinae, Hemibryconinae, Stevardiinae, Planaltininae, Creagrutinae, and Diapominae based on 1348 nuclear loci of ultraconserved elements" figureDoi="http://doi.org/10.5281/zenodo.13785456" httpUri="https://zenodo.org/record/13785456/files/figure.png" pageId="7" pageNumber="8">Fig. 3</figureCitation>
|
||
).
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |