135 lines
9.7 KiB
XML
135 lines
9.7 KiB
XML
<document ID-DOI="10.1093/molbev/msu329" ID-GBIF-Dataset="a364ceb5-1864-42dd-8964-fc452127f62f" ID-PMC="PMC4769323" ID-PubMed="25433366" ID-Zenodo-Dep="3760492" checkinTime="1587548066569" checkinUser="plazi" docAuthor="Foley, Nicole M., Thong, Vu Dinh, Soisook, Pipat, Goodman, Steven M., Armstrong, Kyle N., Jacobs, David S., Puechmaille, Sebastien J. & Teeling, Emma C." docDate="2014" docId="03AC8780FF9BFFFB873E0B3F760E4C36" docLanguage="en" docName="moBiolEvol.32.2.313-333.pdf" docOrigin="Molecular Biology and Evolution 32 (2)" docStyle="DocumentStyle{}" docTitle="Rhinolophidae" docType="treatment" docVersion="6" lastPageNumber="319" masterDocId="FF95FFF8FF9DFFFD84070815756D4A1E" masterDocTitle="How and Why Overcome the Impediments to Resolution: Lessons from rhinolophid and hipposiderid Bats" masterLastPageNumber="333" masterPageNumber="313" pageNumber="319" updateTime="1668135803336" updateUser="ExternalLinkService">
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<mods:mods xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo>
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<mods:title>How and Why Overcome the Impediments to Resolution: Lessons from rhinolophid and hipposiderid Bats</mods:title>
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</mods:titleInfo>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Foley, Nicole M.</mods:namePart>
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<mods:affiliation>School of Biology & Environmental Science, University College Dublin, Belfield, Dublin, Ireland</mods:affiliation>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Thong, Vu Dinh</mods:namePart>
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<mods:affiliation>Institute of Ecology and Biological Resources, Vietnam Academy of Science and Technology, Hanoi, Vietnam</mods:affiliation>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Soisook, Pipat</mods:namePart>
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<mods:affiliation>Princess Maha Chakri Sirindhorn Natural History Museum, Prince of Songkla University, Hat Yai, Songkhla, Thailand</mods:affiliation>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Goodman, Steven M.</mods:namePart>
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<mods:affiliation>Field Museum of Natural History, Chicago, IL, USA</mods:affiliation>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Armstrong, Kyle N.</mods:namePart>
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<mods:affiliation>Australian Centre for Evolutionary Biology & Biodiversity, The University of Adelaide, Adelaide, South Australia, Australia</mods:affiliation>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Jacobs, David S.</mods:namePart>
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<mods:affiliation>Department of Biological Sciences, University of Cape Town, Rondebosch, South Africa</mods:affiliation>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Puechmaille, Sebastien J.</mods:namePart>
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<mods:affiliation>Zoological Institute and Museum, Greifswald University, Greifswald, Germany</mods:affiliation>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Teeling, Emma C.</mods:namePart>
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</mods:name>
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<mods:typeOfResource>text</mods:typeOfResource>
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<mods:relatedItem type="host">
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<mods:titleInfo>
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<mods:title>Molecular Biology and Evolution</mods:title>
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</mods:titleInfo>
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<mods:part>
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<mods:date>2014</mods:date>
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<mods:detail type="pubDate">
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<mods:number>2014-11-29</mods:number>
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</mods:detail>
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<mods:detail type="volume">
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<mods:number>32</mods:number>
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</mods:detail>
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<mods:detail type="issue">
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<mods:number>2</mods:number>
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</mods:detail>
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<mods:extent unit="page">
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<mods:start>313</mods:start>
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<mods:end>333</mods:end>
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</mods:extent>
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</mods:part>
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</mods:relatedItem>
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<mods:classification>journal article</mods:classification>
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<mods:identifier type="DOI">10.1093/molbev/msu329</mods:identifier>
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<mods:identifier type="GBIF-Dataset">a364ceb5-1864-42dd-8964-fc452127f62f</mods:identifier>
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<mods:identifier type="PMC">PMC4769323</mods:identifier>
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<mods:identifier type="PubMed">25433366</mods:identifier>
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<mods:identifier type="Zenodo-Dep">3760492</mods:identifier>
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</mods:mods>
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<treatment ID-DOI="http://doi.org/10.5281/zenodo.3805289" ID-GBIF-Taxon="163730918" ID-Zenodo-Dep="3805289" LSID="urn:lsid:plazi:treatment:03AC8780FF9BFFFB873E0B3F760E4C36" httpUri="http://treatment.plazi.org/id/03AC8780FF9BFFFB873E0B3F760E4C36" lastPageNumber="319" pageId="6" pageNumber="319">
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<subSubSection box="[825,990,810,836]" pageId="6" pageNumber="319" type="nomenclature">
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<paragraph blockId="6.[825,1453,810,1576]" box="[825,990,810,836]" pageId="6" pageNumber="319">
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<heading box="[825,990,810,836]" fontSize="11" level="2" pageId="6" pageNumber="319" reason="1">
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<taxonomicName baseAuthorityName="Gray" baseAuthorityYear="1825" box="[825,990,810,836]" class="Mammalia" family="Rhinolophidae" kingdom="Animalia" order="Chiroptera" pageId="6" pageNumber="319" phylum="Chordata" rank="family">Rhinolophidae</taxonomicName>
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection pageId="6" pageNumber="319" type="discussion">
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<paragraph blockId="6.[825,1453,810,1576]" pageId="6" pageNumber="319">
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The
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<taxonomicName baseAuthorityName="Gray" baseAuthorityYear="1825" box="[878,1028,849,873]" class="Mammalia" family="Rhinolophidae" kingdom="Animalia" order="Chiroptera" pageId="6" pageNumber="319" phylum="Chordata" rank="family">Rhinolophidae</taxonomicName>
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form a fully supported monophyletic group but intrafamilial relationships are less well resolved than for the
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<taxonomicName authorityName="Lydekker, in Flower and Lydekker" authorityYear="1891" box="[973,1128,913,937]" class="Mammalia" family="Hipposideridae" kingdom="Animalia" order="Chiroptera" pageId="6" pageNumber="319" phylum="Chordata" rank="family">Hipposideridae</taxonomicName>
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(see supplementary
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<tableCitation box="[1360,1447,913,937]" captionStart="Table 2" captionStartId="7.[135,187,1476,1496]" captionText="Table 2. P Values Resulting from Statistical Comparison of Alternative Phylogenetic Hypotheses Using Topology Tests in Tree Puzzle and Consel." pageId="6" pageNumber="319">table S2</tableCitation>
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, Supplementary Material online). Generally, the analyses produced a topology that provided either no structure at the base of the crown group
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<taxonomicName baseAuthorityName="Gray" baseAuthorityYear="1825" box="[1099,1249,1009,1033]" class="Mammalia" family="Rhinolophidae" kingdom="Animalia" order="Chiroptera" pageId="6" pageNumber="319" phylum="Chordata" rank="family">Rhinolophidae</taxonomicName>
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or a strict division between the African/European clade, comprising
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<taxonomicName baseAuthorityName="Bechstein" baseAuthorityYear="1800" class="Mammalia" family="Rhinolophidae" genus="Rhinolophus" kingdom="Animalia" order="Chiroptera" pageId="6" pageNumber="319" phylum="Chordata" rank="species" species="hipposideros">
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<emphasis italics="true" pageId="6" pageNumber="319">R. hipposideros</emphasis>
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</taxonomicName>
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,
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<emphasis box="[888,1074,1073,1097]" italics="true" pageId="6" pageNumber="319">
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<taxonomicName baseAuthorityName="Schreber" baseAuthorityYear="1774" box="[888,1070,1073,1097]" class="Mammalia" family="Rhinolophidae" genus="Rhinolophus" kingdom="Animalia" order="Chiroptera" pageId="6" pageNumber="319" phylum="Chordata" rank="species" species="ferrumequinum">R. ferrumequinum</taxonomicName>
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,
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</emphasis>
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and
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<taxonomicName box="[1124,1219,1073,1097]" class="Mammalia" family="Hipposideridae" genus="Rhinonicteris" kingdom="Animalia" order="Chiroptera" pageId="6" pageNumber="319" phylum="Chordata" rank="species" species="euryale">
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<emphasis box="[1124,1219,1073,1097]" italics="true" pageId="6" pageNumber="319">R. euryale</emphasis>
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</taxonomicName>
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versus the Asian clade, comprising all other
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<taxonomicName baseAuthorityName="Simmons" baseAuthorityYear="2005" box="[1040,1165,1105,1129]" class="Mammalia" family="Rhinolophidae" genus="Rhinolophus" kingdom="Animalia" order="Chiroptera" pageId="6" pageNumber="319" phylum="Chordata" rank="genus">
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<emphasis box="[1040,1165,1105,1129]" italics="true" pageId="6" pageNumber="319">Rhinolophus</emphasis>
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</taxonomicName>
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spp. However, the African/ European clade, when recovered, grouped together with relatively low support approximately 60 BSS/0.6 PP. For all analyses using the CAT model in PhyloBayes, a topology with no structure at the base of the crown group
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<taxonomicName baseAuthorityName="Gray" baseAuthorityYear="1825" box="[1256,1406,1233,1257]" class="Mammalia" family="Rhinolophidae" kingdom="Animalia" order="Chiroptera" pageId="6" pageNumber="319" phylum="Chordata" rank="family">Rhinolophidae</taxonomicName>
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was supported. Uniquely, the intron data set with outliers included under a BEAST analysis provided an alternative topology in which
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<taxonomicName baseAuthorityName="Bechstein" baseAuthorityYear="1800" box="[959,1109,1329,1353]" class="Mammalia" family="Rhinolophidae" genus="Rhinolophus" kingdom="Animalia" order="Chiroptera" pageId="6" pageNumber="319" phylum="Chordata" rank="species" species="hipposideros">
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<emphasis box="[959,1109,1329,1353]" italics="true" pageId="6" pageNumber="319">R. hipposideros</emphasis>
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</taxonomicName>
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was the basal clade; however, this was poorly supported, 0.38 PP. The association of Asian taxa was supported across all BA 0.88–1.0 PP, whereas ML analyses provided variable support depending on the data set. The exon and exon+introns data sets strongly support the association of the Asian taxa, 98–100 BSS; however, less support for this association is found in the introns analyses 63–65 BSS.
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |