210 lines
18 KiB
XML
210 lines
18 KiB
XML
<document id="464570680550D420ABD16CADE78B6F69" ID-CLB-Dataset="20659" ID-DOI="10.1099/ijsem.0.004584" ID-GBIF-Dataset="109d423a-de92-47b5-bbb7-afa1103d59a2" ID-ISSN="1466-5034" ID-Zenodo-Dep="6048712" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="existingObjects,plazi" IM.taxonomicNames_approvedBy="felipe" checkinTime="1644597405564" checkinUser="felipe" docAuthor="Xue, Qiong, Zuo, Zhenqiang, Zhou, Heng, Zhou, Jian, Zhang, Shengjie, Han, Jing, Zhao, Dahe & Xiang, Hua" docDate="2021" docId="03A39348FFEA1447275F4B80FDED1721" docLanguage="en" docName="IntJSystEvolMicrobiol.71.1.004584.pdf" docOrigin="International Journal of Systematic and Evolutionary Microbiology (004584) 71 (1)" docSource="http://dx.doi.org/10.1099/ijsem.0.004584" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.3:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="3" docTitle="Salinadaptatus halalkaliphilus Xue & Zuo & Zhou & Zhou & Zhang & Han & Zhao & Xiang 2021, SP. NOV." docType="treatment" docVersion="8" lastPageNumber="9" masterDocId="FF9AEB30FFE2144F27264A1FFFA01022" masterDocTitle="Salinadaptatus halalkaliphilus gen. nov., sp. nov., a haloalkaliphilic archaeon isolated from salt pond in Inner Mongolia Autonomous Region, China" masterLastPageNumber="10" masterPageNumber="1" pageNumber="9" updateTime="1699310777413" updateUser="ExternalLinkService">
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<mods:title id="31ED9E1B9C2C4DE9EC8A7D0D421D6A39">Salinadaptatus halalkaliphilus gen. nov., sp. nov., a haloalkaliphilic archaeon isolated from salt pond in Inner Mongolia Autonomous Region, China</mods:title>
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<mods:namePart id="CD5223BC489EA3378B80AF08493705DF">Xue, Qiong</mods:namePart>
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<mods:namePart id="A58618E581A91D6F79EE5FB8851B1DB5">Zuo, Zhenqiang</mods:namePart>
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<mods:namePart id="CF87A28DD0348C1AAF2A7065F8B378A2">Zhou, Heng</mods:namePart>
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<mods:name id="8CF9245117B244DB56B698A901493E38" type="personal">
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<mods:roleTerm id="27AE82B7A51899BAA9A0E0EFB96E2E7B">Author</mods:roleTerm>
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<mods:namePart id="C73A0A1695FD7CACF3AD77145827CFAB">Zhou, Jian</mods:namePart>
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<mods:roleTerm id="77C5178AC1356465C9573F755110C6E4">Author</mods:roleTerm>
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<mods:namePart id="3E3111EA6F29F1B699F482BFB18A8DBB">Zhang, Shengjie</mods:namePart>
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</mods:name>
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<mods:namePart id="736C9F17C4D8F7095068848E568C3C6F">Han, Jing</mods:namePart>
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<mods:namePart id="941B37E610B992E18C39DE1387321DDF">Zhao, Dahe</mods:namePart>
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<mods:namePart id="A55FD776519694110D4594855D7F736A">Xiang, Hua</mods:namePart>
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<mods:title id="770F965730EBBD2EFAF7A8F67A2FF17B">International Journal of Systematic and Evolutionary Microbiology</mods:title>
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<mods:part id="C5DDAF036E49B48C41C26D4E5976445F">
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<mods:date id="AB0446196FE35E5496E077C15895F485">2021</mods:date>
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<mods:title id="1F75A8215978CCB51A2B158FF263E05B">004584</mods:title>
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<mods:number id="4B9530C8E512A437B59D114F99B41204">2021-01-01</mods:number>
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<mods:number id="80152E137ECEE2389C0EEFCEFE5369F3">71</mods:number>
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<mods:identifier id="8AA544795EBBAAFF6AF95BBF49DFD059" type="ISSN">1466-5034</mods:identifier>
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<mods:identifier id="AF75EB49CF127DB1ECF5B7A86BFCA142" type="Zenodo-Dep">6048712</mods:identifier>
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<treatment id="03A39348FFEA1447275F4B80FDED1721" ID-DOI="http://doi.org/10.5281/zenodo.6310164" ID-GBIF-Taxon="193365922" ID-Zenodo-Dep="6310164" LSID="urn:lsid:plazi:treatment:03A39348FFEA1447275F4B80FDED1721" httpUri="http://treatment.plazi.org/id/03A39348FFEA1447275F4B80FDED1721" lastPageNumber="9" pageId="8" pageNumber="9">
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<subSubSection id="C31071D5FFEA1447275F4B80FE5D11C3" pageId="8" pageNumber="9" type="nomenclature">
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<paragraph id="8BB5225EFFEA1447275F4B80FE5D11C3" blockId="8.[115,766,415,1795]" pageId="8" pageNumber="9">
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<heading id="D0FD9532FFEA1447275F4B80FE5D11C3" allCaps="true" bold="true" fontSize="12" level="2" pageId="8" pageNumber="9" reason="3">
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<emphasis id="B97EFE4CFFEA1447275F4B80FE5D11C3" bold="true" pageId="8" pageNumber="9">
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||
DESCRIPTION OF
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<taxonomicName id="4C0A59DDFFEA144726544B80FE2111C3" authority="Xue & Zuo & Zhou & Zhou & Zhang & Han & Zhao & Xiang, 2021" authorityName="Xue & Zuo & Zhou & Zhou & Zhang & Han & Zhao & Xiang" authorityYear="2021" class="Halobacteria" family="Natrialbaceae" genus="Salinadaptatus" higherTaxonomySource="GBIF" kingdom="Archaea" order="Halobacteriales" pageId="8" pageNumber="9" phylum="Halobacteriota" rank="species" species="halalkaliphilus" status="sp. nov.">
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<emphasis id="B97EFE4CFFEA144726544B80FE2111C3" bold="true" italics="true" pageId="8" pageNumber="9">SALINADAPTATUS HALALKALIPHILUS</emphasis>
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</taxonomicName>
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<taxonomicNameLabel id="A24D4337FFEA144726AF4BDBFE5D11C3" box="[393,509,452,481]" pageId="8" pageNumber="9" rank="species">SP. NOV.</taxonomicNameLabel>
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</emphasis>
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</heading>
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</paragraph>
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||
</subSubSection>
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||
<subSubSection id="C31071D5FFEA1447275F4BF1FE081648" pageId="8" pageNumber="9" type="etymology">
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<paragraph id="8BB5225EFFEA1447275F4BF1FE081648" blockId="8.[115,766,415,1795]" pageId="8" pageNumber="9">
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<taxonomicName id="4C0A59DDFFEA1447275F4BF1FE0E1224" authorityName="Xue & Zuo & Zhou & Zhou & Zhang & Han & Zhao & Xiang" authorityYear="2021" box="[121,430,494,518]" class="Halobacteria" family="Natrialbaceae" genus="Salinadaptatus" higherTaxonomySource="GBIF" kingdom="Archaea" order="Halobacteriales" pageId="8" pageNumber="9" phylum="Halobacteriota" rank="species" species="halalkaliphilus">
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<emphasis id="B97EFE4CFFEA1447275F4BF1FE0E1224" box="[121,430,494,518]" italics="true" pageId="8" pageNumber="9">Salinadaptatus halalkaliphilus</emphasis>
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</taxonomicName>
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(hal.al.ka.li′ phi.lus. Gr. masc. n.
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<emphasis id="B97EFE4CFFEA1447275E4812FF7B1207" box="[120,219,525,549]" italics="true" pageId="8" pageNumber="9">hals halos</emphasis>
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salt; N.L. n.
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<emphasis id="B97EFE4CFFEA1447267A4812FE351207" box="[348,405,525,549]" italics="true" pageId="8" pageNumber="9">alkali</emphasis>
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||
alkali; Gr. masc. adj.
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||
<emphasis id="B97EFE4CFFEA144725494812FD0D1207" box="[623,685,525,549]" italics="true" pageId="8" pageNumber="9">philus</emphasis>
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friend, loving; N.L. masc. adj.
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<taxonomicName id="4C0A59DDFFEA1447264C4834FDA31261" authorityName="Xue & Zuo & Zhou & Zhou & Zhang & Han & Zhao & Xiang" authorityYear="2021" box="[362,515,555,579]" class="Halobacteria" family="Natrialbaceae" genus="Salinadaptatus" higherTaxonomySource="GBIF" kingdom="Archaea" order="Halobacteriales" pageId="8" pageNumber="9" phylum="Halobacteriota" rank="species" species="halalkaliphilus">
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<emphasis id="B97EFE4CFFEA1447264C4834FDA31261" box="[362,515,555,579]" italics="true" pageId="8" pageNumber="9">halalkaliphilus</emphasis>
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</taxonomicName>
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salt and alkali-loving).
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<collectorName id="26FF4788FFEA1447275F4846FF0E1253" box="[121,174,601,625]" pageId="8" pageNumber="9">Cells</collectorName>
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are motile, rod-shaped and Gram-stain-negative.
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<collectorName id="26FF4788FFEA144725EB4846FD581253" box="[717,760,601,625]" pageId="8" pageNumber="9">Cell</collectorName>
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size is 0.4–0.8µm wide and 1.0–2.0µm long.
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<collectorName id="26FF4788FFEA144725484867FD6E12B2" box="[622,718,632,656]" pageId="8" pageNumber="9">Colonies</collectorName>
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are pink, smooth, convex, round, and 1.0–2.0 mm in diameter when cultured on the AM plate at 42 °C for 7–10days.
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<collectorName id="26FF4788FFEA144725EB48A9FD5812EC" box="[717,760,694,718]" pageId="8" pageNumber="9">Cell</collectorName>
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lysis occurs in distilled water and the minimal
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<collectorName id="26FF4788FFEA1447254348CAFD3C12CF" box="[613,668,725,749]" pageId="8" pageNumber="9">NaCl</collectorName>
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concentration to prevent cell lysis is 0.85
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<collectorName id="26FF4788FFEA144726CD48EBFDC31329" box="[491,611,755,779]" pageId="8" pageNumber="9">M. Growth</collectorName>
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occurs in the presence of 2.6–5.3
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<collectorName id="26FF4788FFEA14472669490CFE061308" box="[335,422,786,810]" pageId="8" pageNumber="9">M NaCl</collectorName>
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(optimum 4.4 M), at 30–50 °C (optimum 42 °C) and pH 7.0–10.0 (optimum pH 8.0–8.5).
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<collectorName id="26FF4788FFEA1447275D494FFF3C1345" box="[123,156,848,871]" pageId="8" pageNumber="9">No</collectorName>
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requirement for
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<collectorName id="26FF4788FFEA14472670494FFED8134A" box="[342,376,848,872]" pageId="8" pageNumber="9">Mg</collectorName>
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<superScript id="7C7F8F16FFEA1447265E4951FE29137E" attach="left" box="[376,393,846,860]" fontSize="6" pageId="8" pageNumber="9">2+</superScript>
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, but grows well with the addition of
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<collectorName id="26FF4788FFEA144727B34970FF1913A5" box="[149,185,879,903]" pageId="8" pageNumber="9">Mg</collectorName>
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<superScript id="7C7F8F16FFEA1447279F4972FF6A1359" attach="left" box="[185,202,877,891]" fontSize="6" pageId="8" pageNumber="9">2+</superScript>
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up to 5 mM.
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<collectorName id="26FF4788FFEA1447267D4970FE1213A5" box="[347,434,879,903]" pageId="8" pageNumber="9">Oxidase</collectorName>
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and catalase tests are positive.
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<collectorName id="26FF4788FFEA1447275F4992FF481387" box="[121,232,909,933]" pageId="8" pageNumber="9">Anaerobic</collectorName>
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growth does not occur in the presence of nitrate, L-arginine or DMSO. H
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<subScript id="178E201BFFEA144726A049A3FE2E13E8" attach="both" box="[390,398,956,970]" fontSize="6" pageId="8" pageNumber="9">2</subScript>
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S is produced from cysteine but not from thiosulfate.
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<collectorName id="26FF4788FFEA1447264549D4FE0913C1" box="[355,425,971,995]" pageId="8" pageNumber="9">Indole</collectorName>
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is produced from tryptophan.
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<collectorName id="26FF4788FFEA1447275D49F5FF661420" box="[123,198,1002,1026]" pageId="8" pageNumber="9">Nitrate</collectorName>
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and nitrite cannot be reduced, and no gas formation occurs.
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<collectorName id="26FF4788FFEA144727ED4E16FEBA1403" box="[203,282,1033,1057]" pageId="8" pageNumber="9">Gelatin</collectorName>
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and
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<collectorName id="26FF4788FFEA144726684E16FE3E1402" box="[334,414,1033,1056]" pageId="8" pageNumber="9">Tweens</collectorName>
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20, 40, 60, 80 are hydrolysed but starch and casein are not hydrolysed.
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<collectorName id="26FF4788FFEA144726DD4E38FD82141D" box="[507,546,1063,1087]" pageId="8" pageNumber="9">The</collectorName>
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following substrates are utilized as single carbon and energy sources for growth: glycerol, D-glucose,D-galactose, sucrose, lactose, D-sorbitol, acetate, succinate, L-malate, fumarate, L-glutamate, citrate, L-aspartate.
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<collectorName id="26FF4788FFEA144727DA4EBCFE841499" box="[252,292,1187,1211]" pageId="8" pageNumber="9">The</collectorName>
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following substrates are not utilized as sole sources of carbon and energy: chitin, mannose, maltose, starch, pyruvate, lactate, L-alanine,L-ornithine,D-fructose, D-sorbose,D-xylose, glycine,L-arginine,L-lysine.
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<collectorName id="26FF4788FFEA144725B34EE0FD671535" box="[661,711,1279,1303]" pageId="8" pageNumber="9">Acid</collectorName>
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was produced from glycerol, but not fromD-glucose,D-galactose, sucrose, lactose, D-sorbitol, mannose, maltose, D-fructose, D-sorbose, andD-xylose.
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<collectorName id="26FF4788FFEA144726B44F44FE1B1551" box="[402,443,1371,1395]" pageId="8" pageNumber="9">The</collectorName>
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major polar lipids are phosphatidylglycerol (PG) and phosphatidylglycerol phosphate methyl ester (PGP-Me), but glycolipids were not detected.
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<collectorName id="26FF4788FFEA1447275D4FA7FF0415F2" box="[123,164,1464,1488]" pageId="8" pageNumber="9">The</collectorName>
|
||
main quinones are
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<specimenCode id="DBAC8A25FFEA144726A44FA7FE6315F2" box="[386,451,1464,1488]" collectionCode="MK-" pageId="8" pageNumber="9">MK-8</specimenCode>
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and
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<specimenCode id="DBAC8A25FFEA144726DB4FA7FDE115F2" box="[509,577,1464,1488]" collectionCode="MK-" pageId="8" pageNumber="9">MK-6</specimenCode>
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.
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<materialsCitation id="3B622803FFEA1447256B4FA7FE081648" ID-GBIF-Occurrence="3465828303" pageId="8" pageNumber="9" typeStatus="holotype">
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||
The
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<typeStatus id="54B19CFCFFEA144725584FA7FD0D15F2" box="[638,685,1464,1488]" pageId="8" pageNumber="9">type</typeStatus>
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strain, XQ-INN 246
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<superScript id="7C7F8F16FFEA144726364FCAFEBA15C1" attach="left" box="[272,282,1493,1507]" fontSize="6" pageId="8" pageNumber="9">T</superScript>
|
||
(=CGMCC 1.16692
|
||
<superScript id="7C7F8F16FFEA1447252F4FCAFDB315C1" attach="none" box="[521,531,1493,1507]" fontSize="6" pageId="8" pageNumber="9">T</superScript>
|
||
=JCM 33751
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<superScript id="7C7F8F16FFEA144725804FCAFD1015C1" attach="none" box="[678,688,1493,1507]" fontSize="6" pageId="8" pageNumber="9">T</superScript>
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), was isolated from a salt pond named
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<location id="8ED57485FFEA144726FB4FEAFD54162F" LSID="urn:lsid:plazi:treatment:03A39348FFEA1447275F4B80FDED1721:8ED57485FFEA144726FB4FEAFD54162F" box="[477,756,1525,1549]" country="China" county="The" municipality="Autonomous Region" name="Yanpaozi Lake of Xilingol" pageId="8" pageNumber="9" stateProvince="Nei Mongol">Yanpaozi Lake of Xilingol</location>
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, in
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<collectingRegion id="49CEECBCFFEA144727B34C0AFE9A160E" box="[149,314,1556,1580]" country="China" name="Nei Mongol" pageId="8" pageNumber="9">Inner Mongolia</collectingRegion>
|
||
<collectingMunicipality id="6BD1B824FFEA144726194C0BFDBD160E" box="[319,541,1556,1580]" pageId="8" pageNumber="9">Autonomous Region</collectingMunicipality>
|
||
,
|
||
<collectingCountry id="F31D62CEFFEA144725034C0BFDC9160E" box="[549,617,1556,1580]" name="China" pageId="8" pageNumber="9">China</collectingCountry>
|
||
.
|
||
<collectingCounty id="62D45AD2FFEA144725574C0BFD39160E" box="[625,665,1556,1580]" pageId="8" pageNumber="9">The</collectingCounty>
|
||
genomic DNA G+C content of this strain is 62.06 mol% (determined from the genome sequence).
|
||
</materialsCitation>
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection id="C31071D5FFEA1447275F4C9FFDED1721" pageId="8" pageNumber="9" type="description">
|
||
<paragraph id="8BB5225EFFEA1447275F4C9FFD361694" blockId="8.[115,766,415,1795]" pageId="8" pageNumber="9">
|
||
<materialsCitation id="3B622803FFEA1447275F4C9FFD361694" ID-GBIF-Occurrence="3465828301" pageId="8" pageNumber="9">
|
||
The GenBank accession number of the 16S rRNA gene sequence of the strain XQ-INN 246
|
||
<superScript id="7C7F8F16FFEA144726D44C82FE5C1689" attach="left" box="[498,508,1693,1707]" fontSize="6" pageId="8" pageNumber="9">T</superScript>
|
||
is
|
||
<accessionNumber id="9459BFBDFFEA1447253E4C81FD321694" box="[536,658,1694,1718]" httpUri="https://www.ebi.ac.uk/ena/browser/api/embl/MK226479" pageId="8" pageNumber="9">MK226479</accessionNumber>
|
||
.
|
||
</materialsCitation>
|
||
</paragraph>
|
||
<paragraph id="8BB5225EFFEA1447275F4CD3FDED1721" blockId="8.[115,766,415,1795]" pageId="8" pageNumber="9">
|
||
<materialsCitation id="3B622803FFEA1447275F4CD3FDED1721" ID-GBIF-Occurrence="3465828302" pageId="8" pageNumber="9">
|
||
The GenBank accession number of the genome sequence of the strain XQ-INN 246
|
||
<superScript id="7C7F8F16FFEA144726494CF5FED916DA" attach="left" box="[367,377,1770,1784]" fontSize="6" pageId="8" pageNumber="9">T</superScript>
|
||
is RBZW00000000.
|
||
</materialsCitation>
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |