176 lines
12 KiB
XML
176 lines
12 KiB
XML
<document ID-DOI="http://doi.org/10.5281/zenodo.5685113" ID-GBIF-Dataset="b1b40acc-a139-4224-b746-a4229d457dbf" ID-GBIF-Taxon="126104808" ID-Zenodo-Dep="5685113" checkinTime="1484090000316" checkinUser="plazi" docAuthor="Anush Kosakyan, Daniel J. G. Lahr, Matthieu Mulot, Ralf Meisterfeld, Edward A. D. Mitchell & Enrique Lara" docDate="2016" docId="039E702397077C06FF49996032FAFC96" docLanguage="en" docName="Kosakyan_et_al-2016-Cladistics.pdf" docOrigin="Cladistics 32" docStyle="DocumentStyle{}" docTitle="Quadrulella variabilis Kosakyan, Lahr, Mulot, Meisterfeld, Mitchell & Lara, 2016, sp. nov." docType="treatment" docVersion="14" lastPageNumber="620" masterDocId="FFA7085B97097C08FFE19F343655FFA4" masterDocTitle="Phylogenetic reconstruction based on COI reshuffles the taxonomy of hyalosphenid shelled (testate) amoebae and reveals the convoluted evolution of shell plate shapes" masterLastPageNumber="623" masterPageNumber="606" pageId="14" pageNumber="620" updateTime="1636760631189" updateUser="ExternalLinkService">
|
||
<mods:mods xmlns:mods="http://www.loc.gov/mods/v3">
|
||
<mods:titleInfo>
|
||
<mods:title>Phylogenetic reconstruction based on COI reshuffles the taxonomy of hyalosphenid shelled (testate) amoebae and reveals the convoluted evolution of shell plate shapes</mods:title>
|
||
</mods:titleInfo>
|
||
<mods:name type="personal">
|
||
<mods:role>
|
||
<mods:roleTerm>Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart>Anush Kosakyan</mods:namePart>
|
||
</mods:name>
|
||
<mods:name type="personal">
|
||
<mods:role>
|
||
<mods:roleTerm>Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart>Daniel J. G. Lahr</mods:namePart>
|
||
</mods:name>
|
||
<mods:name type="personal">
|
||
<mods:role>
|
||
<mods:roleTerm>Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart>Matthieu Mulot</mods:namePart>
|
||
</mods:name>
|
||
<mods:name type="personal">
|
||
<mods:role>
|
||
<mods:roleTerm>Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart>Ralf Meisterfeld</mods:namePart>
|
||
</mods:name>
|
||
<mods:name type="personal">
|
||
<mods:role>
|
||
<mods:roleTerm>Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart>Edward A. D. Mitchell</mods:namePart>
|
||
</mods:name>
|
||
<mods:name type="personal">
|
||
<mods:role>
|
||
<mods:roleTerm>Author</mods:roleTerm>
|
||
</mods:role>
|
||
<mods:namePart>Enrique Lara</mods:namePart>
|
||
</mods:name>
|
||
<mods:typeOfResource>text</mods:typeOfResource>
|
||
<mods:relatedItem type="host">
|
||
<mods:titleInfo>
|
||
<mods:title>Cladistics</mods:title>
|
||
</mods:titleInfo>
|
||
<mods:part>
|
||
<mods:date>2016</mods:date>
|
||
<mods:detail type="volume">
|
||
<mods:number>32</mods:number>
|
||
</mods:detail>
|
||
<mods:extent unit="page">
|
||
<mods:start>606</mods:start>
|
||
<mods:end>623</mods:end>
|
||
</mods:extent>
|
||
</mods:part>
|
||
</mods:relatedItem>
|
||
<mods:classification>journal article</mods:classification>
|
||
<mods:identifier type="DOI">10.1111/cla.12167</mods:identifier>
|
||
<mods:identifier type="GBIF-Dataset">b1b40acc-a139-4224-b746-a4229d457dbf</mods:identifier>
|
||
<mods:identifier type="Zenodo-Dep">238712</mods:identifier>
|
||
</mods:mods>
|
||
<treatment ID-DOI="http://doi.org/10.5281/zenodo.5685113" ID-GBIF-Taxon="126104808" ID-Zenodo-Dep="5685113" LSID="urn:lsid:plazi:treatment:039E702397077C06FF49996032FAFC96" httpUri="http://treatment.plazi.org/id/039E702397077C06FF49996032FAFC96" lastPageNumber="620" pageId="14" pageNumber="620">
|
||
<subSubSection pageId="14" pageNumber="620" type="nomenclature">
|
||
<paragraph blockId="14.[136,773,183,1888]" pageId="14" pageNumber="620">
|
||
<taxonomicName box="[168,420,1620,1644]" class="Lobosa" family="Paraquadrulidae" genus="Quadrulella" kingdom="Protozoa" order="Arcellinida" pageId="14" pageNumber="620" phylum="Protozoa" rank="species" species="variabilis" status="sp. nov.">
|
||
<emphasis box="[168,420,1620,1644]" italics="true" pageId="14" pageNumber="620">Quadrulella variabilis</emphasis>
|
||
</taxonomicName>
|
||
<taxonomicNameLabel box="[441,545,1620,1643]" pageId="14" pageNumber="620" rank="species">sp. nov.</taxonomicNameLabel>
|
||
Kosakyan, Lahr, Mulot, Meisterfeld, Mitchell and Lara
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection pageId="14" pageNumber="620" type="description">
|
||
<paragraph blockId="14.[136,773,183,1888]" lastBlockId="14.[837,1474,183,1888]" pageId="14" pageNumber="620">
|
||
<emphasis box="[161,297,1681,1705]" italics="true" pageId="14" pageNumber="620">Description.</emphasis>
|
||
Test ovoid or pyriform, with a rounded posterior end, laterally compressed towards the pseudostome, very similar to that in
|
||
<taxonomicName box="[522,687,1742,1766]" class="Bivalvia" family="Unionidae" genus="Quadrula" kingdom="Animalia" order="Unionoida" pageId="14" pageNumber="620" phylum="Mollusca" rank="species" species="symmetrica">
|
||
<emphasis box="[522,687,1742,1766]" italics="true" pageId="14" pageNumber="620">Q. symmetrica</emphasis>
|
||
</taxonomicName>
|
||
, sometimes with an elongated neck. Test colourless, composed of square plates, regularly arranged in rows. The plates are smaller near the aperture (3
|
||
<emphasis box="[626,639,1834,1857]" italics="true" pageId="14" pageNumber="620">–</emphasis>
|
||
4 µm), then gradually become larger (up to 7
|
||
<emphasis box="[545,558,1864,1887]" italics="true" pageId="14" pageNumber="620">–</emphasis>
|
||
9 µm) toward the posterior end of the test. Dimensions of the test (based on the seven sequenced individuals): length
|
||
<emphasis box="[1383,1398,215,238]" italics="true" pageId="14" pageNumber="620">=</emphasis>
|
||
66
|
||
<emphasis box="[1434,1447,215,238]" italics="true" pageId="14" pageNumber="620">–</emphasis>
|
||
69 (96) µm, breadth
|
||
<emphasis box="[1059,1074,245,268]" italics="true" pageId="14" pageNumber="620">=</emphasis>
|
||
35
|
||
<emphasis box="[1111,1124,245,268]" italics="true" pageId="14" pageNumber="620">–</emphasis>
|
||
40.5 (45) µm. Aperture 17
|
||
<emphasis box="[1461,1474,245,268]" italics="true" pageId="14" pageNumber="620">–</emphasis>
|
||
18.5 µm wide, often curved and bordered by a thin organic lip.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection pageId="14" pageNumber="620" type="diagnosis">
|
||
<paragraph blockId="14.[837,1474,183,1888]" pageId="14" pageNumber="620">
|
||
<emphasis box="[862,1116,336,360]" italics="true" pageId="14" pageNumber="620">Differential diagnosis.</emphasis>
|
||
See diagnosis of
|
||
<taxonomicName class="Bivalvia" family="Unionidae" genus="Quadrula" kingdom="Animalia" order="Unionoida" pageId="14" pageNumber="620" phylum="Mollusca" rank="species" species="symmetrica">
|
||
<emphasis italics="true" pageId="14" pageNumber="620">Q. symmetrica</emphasis>
|
||
</taxonomicName>
|
||
.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection pageId="14" pageNumber="620" type="materials_examined">
|
||
<materialsCitation ID-GBIF-Occurrence="1424522573" collectedFrom="Sphagnum mosses" country="Switzerland" latitude="47.5" location="Neuchâtel" longLatPrecision="6704" longitude="6.4" pageId="14" pageNumber="620" specimenCount="1" stateProvince="Neuchâtel" typeStatus="holotype">
|
||
<paragraph blockId="14.[837,1474,183,1888]" pageId="14" pageNumber="620">
|
||
<emphasis box="[862,1020,398,422]" italics="true" pageId="14" pageNumber="620">Type locality.</emphasis>
|
||
The tests were collected from
|
||
<collectedFrom pageId="14" pageNumber="620">
|
||
<taxonomicName class="Sphagnopsida" family="Sphagnaceae" genus="Sphagnum" kingdom="Plantae" order="Sphagnales" pageId="14" pageNumber="620" phylum="Bryophyta" rank="genus">
|
||
<emphasis italics="true" pageId="14" pageNumber="620">Sphagnum</emphasis>
|
||
</taxonomicName>
|
||
mosses
|
||
</collectedFrom>
|
||
in Le Cachot bog, Vallée de la Brévine, Canton of
|
||
<collectingRegion box="[964,1083,458,482]" country="Switzerland" name="Neuchatel" pageId="14" pageNumber="620">Neuchâtel</collectingRegion>
|
||
,
|
||
<collectingCountry box="[1095,1228,458,482]" name="Switzerland" pageId="14" pageNumber="620">Switzerland</collectingCountry>
|
||
(
|
||
<geoCoordinate box="[1245,1328,458,482]" direction="north" orientation="latitude" pageId="14" pageNumber="620" precision="5555" value="47.5">
|
||
47.5
|
||
<emphasis box="[1294,1304,458,482]" italics="true" pageId="14" pageNumber="620">°</emphasis>
|
||
N
|
||
</geoCoordinate>
|
||
,
|
||
<geoCoordinate box="[1342,1408,458,482]" direction="east" orientation="longitude" pageId="14" pageNumber="620" precision="5555" value="6.4">
|
||
6.4
|
||
<emphasis box="[1376,1386,458,482]" italics="true" pageId="14" pageNumber="620">°</emphasis>
|
||
E
|
||
</geoCoordinate>
|
||
).
|
||
</paragraph>
|
||
<paragraph blockId="14.[837,1474,183,1888]" box="[862,1274,489,514]" pageId="14" pageNumber="620">
|
||
<emphasis box="[862,973,489,513]" italics="true" pageId="14" pageNumber="620">
|
||
<typeStatus box="[862,969,489,513]" pageId="14" pageNumber="620">Holotype</typeStatus>
|
||
.
|
||
</emphasis>
|
||
<figureCitation box="[981,1052,489,513]" captionStart="Fig. 2" captionStartId="5.[113,146,971,990]" captionTargetId="figure@5.[363,1203,183,953]" captionTargetPageId="5" captionText="Fig. 2. Light micrographs of barcoded Quadrulella variabilis sp. nov. cells: (a) cell Q- 54; (b) cell Q- 48; (c) cell Q- 52; (d) cell Q- 101; (e) cell Q- 98; (f) cell Q- 53. Scale bars = 10 µm." httpUri="https://zenodo.org/record/257973/files/figure.png" pageId="14" pageNumber="620">Fig. 2</figureCitation>
|
||
,
|
||
<materialsCitation ID-GBIF-Occurrence="1424522572" box="[1075,1274,489,514]" collectedFrom="Sphagnum mosses" country="Switzerland" latitude="47.5" location="Neuchâtel" longLatPrecision="6704" longitude="6.4" pageId="14" pageNumber="620" specimenCount="1" stateProvince="Neuchâtel" typeStatus="paratype">
|
||
<typeStatus box="[1075,1175,490,514]" pageId="14" pageNumber="620">paratype</typeStatus>
|
||
<figureCitation box="[1184,1254,489,513]" captionStart="Fig. 7" captionStartId="8.[136,169,548,567]" captionTargetId="figure@8.[385,1224,183,531]" captionTargetPageId="8" captionText="Fig. 7. Light micrographs of three barcoded Mrabella subcarinata cells (previously known as Quadrulella subcarinata): (a) cell Q- 1; (b) cell Q- 2; (c) cell Q- 16. Scale bars = 20 µm (in a and b) and 50 µm (in c)." httpUri="https://zenodo.org/record/257978/files/figure.png" pageId="14" pageNumber="620">Fig. 7</figureCitation>
|
||
d.
|
||
</materialsCitation>
|
||
</paragraph>
|
||
</materialsCitation>
|
||
</subSubSection>
|
||
<subSubSection pageId="14" pageNumber="620" type="etymology">
|
||
<paragraph blockId="14.[837,1474,183,1888]" pageId="14" pageNumber="620">
|
||
<emphasis box="[862,991,520,544]" italics="true" pageId="14" pageNumber="620">Etymology.</emphasis>
|
||
The species has members with a variable neck length.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection pageId="14" pageNumber="620" type="discussion">
|
||
<paragraph blockId="14.[837,1474,183,1888]" pageId="14" pageNumber="620">
|
||
<emphasis box="[862,935,581,605]" italics="true" pageId="14" pageNumber="620">Notes.</emphasis>
|
||
One other possibility is to describe the entire clade as
|
||
<taxonomicName box="[948,1096,611,635]" class="Lobosa" family="Paraquadrulidae" genus="Quadrulella" kingdom="Protozoa" order="Arcellinida" pageId="14" pageNumber="620" phylum="Protozoa" rank="species" species="longicollis">
|
||
<emphasis box="[948,1096,611,635]" italics="true" pageId="14" pageNumber="620">Q. longicollis</emphasis>
|
||
</taxonomicName>
|
||
. However, given that we have only one
|
||
<taxonomicName box="[947,1095,642,666]" class="Lobosa" family="Paraquadrulidae" genus="Quadrulella" kingdom="Protozoa" order="Arcellinida" pageId="14" pageNumber="620" phylum="Protozoa" rank="species" species="longicollis">
|
||
<emphasis box="[947,1095,642,666]" italics="true" pageId="14" pageNumber="620">Q. longicollis</emphasis>
|
||
</taxonomicName>
|
||
sequence (which may not correspond to the typical
|
||
<taxonomicName box="[1111,1259,673,697]" class="Lobosa" family="Paraquadrulidae" genus="Quadrulella" kingdom="Protozoa" order="Arcellinida" pageId="14" pageNumber="620" phylum="Protozoa" rank="species" species="longicollis">
|
||
<emphasis box="[1111,1259,673,697]" italics="true" pageId="14" pageNumber="620">Q. longicollis</emphasis>
|
||
</taxonomicName>
|
||
, see Discussion), DNA of which was extracted from more than one cell, we would need additional data to understand whether the elongated neck is a result of phenotypic plasticity or a genetically fixed character.
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |