128 lines
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128 lines
13 KiB
XML
<document id="8BD0DBB63098FC750AEF331798B2ECFF" ID-DOI="10.5252/cryptogamiemycologie2024v45a2" ID-ISSN="1776-100X" ID-Zenodo-Dep="10679599" IM.bibliography_approvedBy="diego" IM.illustrations_approvedBy="diego" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="diego" IM.tables_approvedBy="diego" IM.taxonomicNames_approvedBy="diego" IM.treatments_approvedBy="diego" checkinTime="1708072976851" checkinUser="plazi" docAuthor="Ferrari, Roselyne, Gautier, Valérie, Tangthirasunun, Narumon, Tong, Laetitia Chan Ho & Silar, Philippe" docDate="2024" docId="038387E2323B4D7C2874FA6378D8F85A" docLanguage="en" docName="mycologie.2024.45.2.pdf" docOrigin="Cryptogamie, Mycologie 20 (2)" docSource="https://sciencepress.mnhn.fr/sites/default/files/articles/pdf/mycologie2024v45a2.pdf" docStyle="DocumentStyle:81F49AB8619EB7E5D11A6328441E2653.4:CryptogamieMycologie.2019-.journal_article" docStyleId="81F49AB8619EB7E5D11A6328441E2653" docStyleName="CryptogamieMycologie.2019-.journal_article" docStyleVersion="4" docTitle="Podospora anserina Niessl" docType="treatment" docVersion="3" lastPageNumber="20" masterDocId="FFBAFF9A32304D772B59FFB07C2FFFB1" masterDocTitle="Characterization of the Podospora anserina (Rabenh.) Niessl peroxidase gene family" masterLastPageNumber="28" masterPageNumber="11" pageNumber="20" updateTime="1708352200916" updateUser="ExternalLinkService" zenodo-license-document="CC0-1.0" zenodo-license-figures="CC0-1.0" zenodo-license-treatments="UNSPECIFIED">
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<mods:title id="D1185B3FD53B34AC07AEE6FD22D93679">Characterization of the Podospora anserina (Rabenh.) Niessl peroxidase gene family</mods:title>
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<mods:namePart id="BED5182B0E06F6AE047FA804371738F6">Ferrari, Roselyne</mods:namePart>
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<mods:affiliation id="C9690E906119AF270745B83678674DD3">Université Paris Diderot, Sorbonne Paris Cité, Laboratoire Interdisciplinaire des Énergies de Demain, 75205 Paris Cité Cedex 13 (France)</mods:affiliation>
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<mods:namePart id="4BF40CE14D7D5593DFE74451C79A2E03">Gautier, Valérie</mods:namePart>
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<mods:affiliation id="C1B0C5AC79CEC2D33B932C61227043A9">Université Paris Diderot, Sorbonne Paris Cité, Laboratoire Interdisciplinaire des Énergies de Demain, 75205 Paris Cité Cedex 13 (France)</mods:affiliation>
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<mods:namePart id="1FDD0C0DF5106129FF6E187FB2825AAE">Tangthirasunun, Narumon</mods:namePart>
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<mods:affiliation id="6CEAC374B5D034C787997929E30E38E4">Department of Biology, Faculty of Science, King Mongkut’s Institute of Technology Ladkrabang, Bangkok, 10520 (Thailand) Université Paris Diderot, Sorbonne Paris Cité, Laboratoire Interdisciplinaire des Énergies de Demain, 75205 Paris Cité Cedex 13 (France) philippe. silar @ univ-paris-diderot. fr (corresponding author)</mods:affiliation>
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<mods:nameIdentifier id="068917B66C886683075B2720690ED1F8" type="email">philippe.silar@univ-paris-diderot.fr</mods:nameIdentifier>
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<mods:namePart id="ED2FA382C83987509191E683E37E59C4">Tong, Laetitia Chan Ho</mods:namePart>
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<mods:affiliation id="41D0D855F0F58BFE6F1B6CCA0878978D">Université Paris Diderot, Sorbonne Paris Cité, Laboratoire Interdisciplinaire des Énergies de Demain, 75205 Paris Cité Cedex 13 (France)</mods:affiliation>
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<mods:namePart id="C06EE50F2D77F7E9DF9A599CD4F00B06">Silar, Philippe</mods:namePart>
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<mods:affiliation id="B0BF0145C638A2102E7470CD489A8FC7">Université Paris Diderot, Sorbonne Paris Cité, Laboratoire Interdisciplinaire des Énergies de Demain, 75205 Paris Cité Cedex 13 (France)</mods:affiliation>
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<mods:nameIdentifier id="837BCD5EE8C43032BADD644FC5BAAD25" type="email">philippe.silar@univ-paris-diderot.fr</mods:nameIdentifier>
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<mods:title id="319AE57456559B34B365C5F3E909F620">Cryptogamie, Mycologie</mods:title>
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<mods:date id="7564CABC6FBA60B522C082A201966C46">2024</mods:date>
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<mods:number id="FD30FC0EA910ED22ACEEC061FDC82437">2024-02-15</mods:number>
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<mods:number id="1BB3C662B74440EDE31CCC44E87FBBBB">20</mods:number>
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<mods:identifier id="B2A98F1C9910093B2243E82EDEEAA4D1" type="DOI">10.5252/cryptogamiemycologie2024v45a2</mods:identifier>
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<treatment id="038387E2323B4D7C2874FA6378D8F85A" ID-DOI="http://doi.org/10.5281/zenodo.10679619" ID-Zenodo-Dep="10679619" LSID="urn:lsid:plazi:treatment:038387E2323B4D7C2874FA6378D8F85A" httpUri="http://treatment.plazi.org/id/038387E2323B4D7C2874FA6378D8F85A" lastPageNumber="20" pageId="11" pageNumber="20">
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<subSubSection id="C330657F323B4D7C2874FA63786EF9BA" pageId="11" pageNumber="20" type="nomenclature">
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<paragraph id="8B9536F4323B4D7C2874FA63786EF9BA" blockId="11.[813,1183,1491,1548]" pageId="11" pageNumber="20">
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<heading id="D0DD8198323B4D7C2874FA63786EF9BA" allCaps="true" fontSize="9" level="2" pageId="11" pageNumber="20" reason="2">
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IN
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<taxonomicName id="4C2A4D77323B4D7C2812FA437FE5F9BA" ID-CoL="4KRKT" authority="(Rabenh.) Niessl" authorityName="Niessl" baseAuthorityName="Rabenh." box="[843,970,1523,1548]" class="Sordariomycetes" family="Lasiosphaeriaceae" genus="Podospora" kingdom="Fungi" order="Sordariales" pageId="11" pageNumber="20" phylum="Ascomycota" rank="species" species="anserina">
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<emphasis id="B95EEAE6323B4D7C2812FA437FE5F9BA" box="[843,970,1523,1548]" italics="true" pageId="11" pageNumber="20">P. ANSERINA</emphasis>
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MYCELIUM
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<paragraph id="8B9536F4323B4D7C2874F9A378D8F85A" blockId="11.[811,1457,1554,2027]" pageId="11" pageNumber="20">
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We evaluated the expression of peroxidase genes during two days and four days of growth on M2 medium (
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<tableCitation id="C6A8034F323B4D7C2E74F9827951F9FC" box="[1325,1406,1586,1613]" captionStart="TABLE" captionStartId="5.[131,142,219,237]" captionTargetPageId="5" captionText="TABLE 1. — Peroxidase genes in P. anserina (Rabenh.) Niessl genome. Symbols: ND, not determined;?, ambiguous answers from the prediction programs; ex-" httpUri="http://table.plazi.org/id/DF55667C32354D722BDAFF6B7FC7FEB5" pageId="11" pageNumber="20" tableUuid="DF55667C32354D722BDAFF6B7FC7FEB5">Table 1</tableCitation>
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), by analyzing microarrays and RNAseq data generated in previous studies (
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<bibRefCitation id="EFBB4B05323B4D7C28EDF9C27856F93D" author="BIDARD F. & COPPIN E. & SILAR P." box="[948,1145,1650,1676]" pageId="11" pageNumber="20" pagination="643 - 652" refId="ref9657" refString="BIDARD F., COPPIN E. & SILAR P. 2012. - The transcriptional response to the inactivation of the PaMpk 1 and PaMpk 2 MAP kinase pathways in Podospora anserina. Fungal Genetics & Biology 49 (8): 643 - 652." type="book chapter" year="2012">
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Bidard
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<emphasis id="B95EEAE6323B4D7C2F5CF9C37816F93D" box="[1029,1081,1650,1676]" italics="true" pageId="11" pageNumber="20">et al.</emphasis>
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2012
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</bibRefCitation>
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;
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<bibRefCitation id="EFBB4B05323B4D7C2FD1F9C2791AF93D" author="SILAR P. & DAUGET J. - M. & GAUTIER V. & GROGNET P. & CHABLAT M. & HERMANN-LE DENMAT S. & COULOUX A. & WINCKER P. & DEBUCHY R." box="[1160,1333,1650,1676]" pageId="11" pageNumber="20" pagination="177 - 190" refId="ref11829" refString="SILAR P., DAUGET J. - M., GAUTIER V., GROGNET P., CHABLAT M., HERMANN-LE DENMAT S., COULOUX A., WINCKER P. & DEBUCHY R. 2019. - A gene graveyard in the genome of the fungus Podospora comata. Molecular Genetics and Genomics 294: 177 - 190. https: // doi. org / 10.1007 / s 00438 - 018 - 1497 - 3" type="journal article" year="2019">
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Silar
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<emphasis id="B95EEAE6323B4D7C2F99F9C378DAF93D" box="[1216,1269,1650,1676]" italics="true" pageId="11" pageNumber="20">et al.</emphasis>
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2019
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</bibRefCitation>
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) (
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<tableCitation id="C6A8034F323B4D7C2E17F9C279B0F93D" box="[1358,1439,1650,1676]" captionStart="TABLE" captionStartId="5.[131,142,219,237]" captionTargetPageId="5" captionText="TABLE 1. — Peroxidase genes in P. anserina (Rabenh.) Niessl genome. Symbols: ND, not determined;?, ambiguous answers from the prediction programs; ex-" httpUri="http://table.plazi.org/id/DF55667C32354D722BDAFF6B7FC7FEB5" pageId="11" pageNumber="20" tableUuid="DF55667C32354D722BDAFF6B7FC7FEB5">Table 1</tableCitation>
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). We could evidence expression of all peroxidase genes (except for the “
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<emphasis id="B95EEAE6323B4D7C28D4F9027FC0F97D" box="[909,1007,1714,1740]" italics="true" pageId="11" pageNumber="20">Pa_2_10</emphasis>
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” pseudogene). The hybrid B peroxidase
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<emphasis id="B95EEAE6323B4D7C2876F9627F84F95D" box="[815,939,1746,1772]" italics="true" pageId="11" pageNumber="20">Pa_2_9370</emphasis>
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and the aromatic peroxygenase
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<emphasis id="B95EEAE6323B4D7C2FA6F9627941F95D" box="[1279,1390,1746,1772]" italics="true" pageId="11" pageNumber="20">Pa_0_370</emphasis>
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genes were highly transcribed; on the contrary, the class II peroxidase
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<emphasis id="B95EEAE6323B4D7C2872F8A27F8AF89D" box="[811,933,1810,1836]" italics="true" pageId="11" pageNumber="20">Pa_1_5970</emphasis>
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and the aromatic peroxygenase
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<emphasis id="B95EEAE6323B4D7C2FB6F8A27957F89D" box="[1263,1400,1810,1836]" italics="true" pageId="11" pageNumber="20">Pa_5_12205</emphasis>
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gene were poorly expressed, a feature compatible with the lack of the aromatic peroxygenase
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<emphasis id="B95EEAE6323B4D7C2F00F8E278F8F8DD" box="[1113,1239,1874,1900]" italics="true" pageId="11" pageNumber="20">
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Pa_5_
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</emphasis>
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in secretomes data. Note that analysis of RNAseq data from perithecia showed that the class II peroxidase
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<emphasis id="B95EEAE6323B4D7C2F12F82178E8F81A" box="[1099,1223,1937,1963]" italics="true" pageId="11" pageNumber="20">Pa_1_5970</emphasis>
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gene was much more transcribed in these sexual fruiting bodies than in the mycelium, especially in four-day-old perithecia.
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</paragraph>
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