193 lines
18 KiB
XML
193 lines
18 KiB
XML
<document ID-DOI="10.1371/journal.pone.0179555" ID-GBIF-Dataset="6ea2cc5c-857b-4b47-8135-8bff7efbd1fc" ID-PMC="PMC5526618" ID-PubMed="28742835" ID-Zenodo-Dep="4251352" approvedBy="poa" checkinTime="1604676189431" checkinUser="tatiana" docAuthor="Voon-Ching Lim, Rosli Ramli, Subha Bhassu & John-James Wilson" docDate="2017" docId="03F3F77FFF96FF8AFDB4D3DABB2CFA6A" docLanguage="en" docName="PLoSOne.12.7.e0179555.pdf.imf" docOrigin="PLoS ONE 12 (7)" docStyle="DocumentStyle{}" docTitle="Dyacopterus spadiceus" docType="treatment" docVersion="7" lastPageNumber="9" masterDocId="FFCA8F07FF9EFF82FF81D072BF4BFFA2" masterDocTitle="A checklist of the bats of Peninsular Malaysia and progress towards a DNA barcode reference library" masterLastPageNumber="65" masterPageNumber="1" pageNumber="9" updateTime="1668143238971" updateUser="ExternalLinkService" zenodo-license-document="CC-BY-4.0">
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<mods:mods xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo>
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<mods:title>A checklist of the bats of Peninsular Malaysia and progress towards a DNA barcode reference library</mods:title>
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</mods:titleInfo>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Voon-Ching Lim</mods:namePart>
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<mods:affiliation>Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, Malaysia</mods:affiliation>
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<mods:nameIdentifier type="email">voonchinglim@gmail.com</mods:nameIdentifier>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Rosli Ramli</mods:namePart>
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<mods:affiliation>Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, Malaysia</mods:affiliation>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Subha Bhassu</mods:namePart>
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<mods:affiliation>Institute of Biological Sciences, Faculty of Science, University of Malaya, Kuala Lumpur, Malaysia,</mods:affiliation>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>John-James Wilson</mods:namePart>
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<mods:affiliation>International College Beijing, China Agricultural University, Beijing, P. R. China</mods:affiliation>
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<mods:nameIdentifier type="email">wilso04@gmail.com</mods:nameIdentifier>
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</mods:name>
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<mods:typeOfResource>text</mods:typeOfResource>
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<mods:relatedItem type="host">
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<mods:titleInfo>
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<mods:title>PLoS ONE</mods:title>
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</mods:titleInfo>
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<mods:part>
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<mods:date>2017</mods:date>
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<mods:detail type="pubDate">
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<mods:number>2017-07-25</mods:number>
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</mods:detail>
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<mods:detail type="volume">
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<mods:number>12</mods:number>
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</mods:detail>
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<mods:detail type="issue">
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<mods:number>7</mods:number>
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</mods:detail>
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<mods:extent unit="page">
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<mods:start>1</mods:start>
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<mods:end>65</mods:end>
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</mods:extent>
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</mods:part>
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</mods:relatedItem>
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<mods:classification>journal article</mods:classification>
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<mods:identifier type="DOI">10.1371/journal.pone.0179555</mods:identifier>
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<mods:identifier type="GBIF-Dataset">6ea2cc5c-857b-4b47-8135-8bff7efbd1fc</mods:identifier>
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<mods:identifier type="PMC">PMC5526618</mods:identifier>
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<mods:identifier type="PubMed">28742835</mods:identifier>
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<mods:identifier type="Zenodo-Dep">4251352</mods:identifier>
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</mods:mods>
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<treatment ID-DOI="http://doi.org/10.5281/zenodo.4343666" ID-GBIF-Taxon="168816104" ID-Zenodo-Dep="4343666" LSID="urn:lsid:plazi:treatment:03F3F77FFF96FF8AFDB4D3DABB2CFA6A" httpUri="http://treatment.plazi.org/id/03F3F77FFF96FF8AFDB4D3DABB2CFA6A" lastPageNumber="9" pageId="8" pageNumber="9">
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<subSubSection box="[565,982,935,960]" pageId="8" pageNumber="9" type="nomenclature">
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<paragraph blockId="8.[533,1532,935,1480]" box="[565,982,935,960]" pageId="8" pageNumber="9">
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<heading box="[565,982,935,960]" pageId="8" pageNumber="9">
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<taxonomicName baseAuthorityName="Thomas" baseAuthorityYear="1890" box="[565,810,935,959]" class="Mammalia" family="Pteropodidae" genus="Dyacopterus" kingdom="Animalia" order="Chiroptera" pageId="8" pageNumber="9" phylum="Chordata" rank="species" species="spadiceus">
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<emphasis bold="true" box="[565,810,935,959]" italics="true" pageId="8" pageNumber="9">Dyacopterusspadiceus</emphasis>
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</taxonomicName>
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[Thomas, 1890]
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection pageId="8" pageNumber="9" type="reference_group">
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<paragraph blockId="8.[533,1532,935,1480]" pageId="8" pageNumber="9">
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<taxonomicName authority="Thomas, 1890: 235" authorityName="Thomas" authorityPageNumber="235" authorityYear="1890" box="[565,995,970,994]" class="Mammalia" family="Pteropodidae" genus="Cynopterus" kingdom="Animalia" order="Chiroptera" pageId="8" pageNumber="9" phylum="Chordata" rank="species" species="spadiceus">
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<emphasis box="[565,787,970,994]" italics="true" pageId="8" pageNumber="9">Cynopterus spadiceus</emphasis>
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<materialsCitation ID-GBIF-Occurrence="2960680324" box="[793,995,970,994]" collectionCode="BM" collectorName="Charles Hose" country="Malaysia" location="Baram" pageId="8" pageNumber="9" specimenCount="1" stateProvince="Sarawak">Thomas, 1890: 235</materialsCitation>
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</taxonomicName>
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;
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<location LSID="urn:lsid:plazi:treatment:03F3F77FFF96FF8AFDB4D3DABB2CFA6A:8E8510B2FF96FF8AFC6CD3B8BB7EFC40" box="[1005,1077,970,994]" country="Malaysia" name="Baram" pageId="8" pageNumber="9" stateProvince="Sarawak">Baram</location>
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,
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<collectingRegion box="[1087,1178,970,994]" country="Malaysia" name="Sarawak" pageId="8" pageNumber="9">Sarawak</collectingRegion>
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,
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<collectingCountry box="[1188,1319,970,994]" name="Malaysia" pageId="8" pageNumber="9">MALAYSIA</collectingCountry>
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(
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<collectorName box="[1332,1478,970,994]" pageId="8" pageNumber="9">Charles Hose</collectorName>
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, collector; BM(NH) 1890.1.28.4) [
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<bibRefCitation author="Thomas O. XXXVI." box="[853,878,1005,1029]" journalOrPublisher="Annals Mag Nat Hist." pageId="8" pageNumber="9" pagination="235 - 236" part="5" refId="ref41181" refString="75. Thomas O. XXXVI. - Diagnosis of a new Cynopterus from Borneo. Annals Mag Nat Hist. 1890; 5 (27): 235 - 236." title="Diagnosis of a new Cynopterus from Borneo" type="journal article" year="1890">75</bibRefCitation>
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].
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</paragraph>
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<paragraph blockId="8.[533,1532,935,1480]" box="[565,853,1039,1064]" pageId="8" pageNumber="9">
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<taxonomicName authorityName="Thomas" authorityYear="1890" box="[565,798,1039,1063]" class="Mammalia" family="Pteropodidae" genus="Cynopterus" kingdom="Animalia" order="Chiroptera" pageId="8" pageNumber="9" phylum="Chordata" rank="species" species="spadiceus">
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<emphasis box="[565,798,1039,1063]" italics="true" pageId="8" pageNumber="9">Dyacopterusspadiceus</emphasis>
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</taxonomicName>
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[
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<bibRefCitation author="Andersen K." box="[813,838,1040,1064]" journalOrPublisher="London: Trustees" pageId="8" pageNumber="9" refId="ref41213" refString="76. Andersen K. Catalogue of the Chiroptera in the Collection of the British Museum. London: Trustees; 1912." title="Catalogue of the Chiroptera in the Collection of the British Museum" type="book" year="1912">76</bibRefCitation>
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].
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</paragraph>
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</subSubSection>
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<subSubSection box="[565,1007,1074,1098]" pageId="8" pageNumber="9" type="vernacular_names">
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<paragraph blockId="8.[533,1532,935,1480]" box="[565,1007,1074,1098]" pageId="8" pageNumber="9">
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<emphasis bold="true" box="[565,834,1074,1098]" pageId="8" pageNumber="9">Common English name:</emphasis>
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Dayak Fruit Bat
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</paragraph>
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</subSubSection>
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<subSubSection pageId="8" pageNumber="9" type="materials_examined">
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<paragraph blockId="8.[533,1532,935,1480]" pageId="8" pageNumber="9">
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<emphasis bold="true" box="[565,832,1109,1133]" pageId="8" pageNumber="9">Barcode Index Number:</emphasis>
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There are two public DNA barcodes of
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<emphasis box="[1254,1273,1109,1132]" italics="true" pageId="8" pageNumber="9">D</emphasis>
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.
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<taxonomicName authorityName="Thomas" authorityYear="1890" box="[1284,1382,1109,1133]" class="Mammalia" family="Pteropodidae" genus="Cynopterus" kingdom="Animalia" order="Chiroptera" pageId="8" pageNumber="9" phylum="Chordata" rank="species" species="spadiceus">
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<emphasis box="[1284,1382,1109,1133]" italics="true" pageId="8" pageNumber="9">spadiceus</emphasis>
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</taxonomicName>
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on
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<collectionCode box="[1422,1493,1109,1133]" pageId="8" pageNumber="9">BOLD</collectionCode>
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, but neither are associated with any
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<collectionCode box="[906,950,1144,1168]" pageId="8" pageNumber="9">BIN</collectionCode>
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due to the short sequence length (
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<emphasis box="[1314,1335,1144,1168]" italics="true" pageId="8" pageNumber="9"><</emphasis>
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500 bp). One DNA barcode (
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<collectionCode box="[695,737,1178,1202]" country="United Kingdom" name="Bristol Museum" pageId="8" pageNumber="9">BM</collectionCode>
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447-04) is from Peninsular
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<collectingCountry box="[1025,1119,1178,1202]" name="Malaysia" pageId="8" pageNumber="9">Malaysia</collectingCountry>
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[
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<bibRefCitation author="Francis CM & Borisenko AV & Ivanova NV & Eger JL & Lim BK & Guillen-Servent A" box="[1134,1147,1178,1202]" journalOrPublisher="PloS one." pageId="8" pageNumber="9" pagination="12575" part="5" refId="ref37870" refString="4. Francis CM, Borisenko AV, Ivanova NV, Eger JL, Lim BK, Guillen-Servent A, et al. The role of DNA barcodes in understanding and conservation of mammal diversity in Southeast Asia. PloS one. 2010 Sep 3. 5 (9): e 12575. https: // doi. org / 10.1371 / journal. pone. 0012575 PMID: 20838635" title="The role of DNA barcodes in understanding and conservation of mammal diversity in Southeast Asia" type="journal article" year="2010">4</bibRefCitation>
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] and our NJ analysis revealed that this DNA barcode exhibited little divergence with the DNA barcode from
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<collectingRegion box="[1317,1444,1213,1237]" country="Indonesia" name="Kalimantan Utara" pageId="8" pageNumber="9">Kalimantan</collectingRegion>
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,
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<collectingCountry name="Indonesia" pageId="8" pageNumber="9">Indonesia</collectingCountry>
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(
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<collectionCode box="[601,643,1248,1272]" country="United Kingdom" name="Bristol Museum" pageId="8" pageNumber="9">BM</collectionCode>
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265-04) (
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<figureCitation box="[738,791,1248,1272]" captionStart="Fig 2" captionStartId="5.[533,565,1257,1276]" captionTargetBox="[533,1446,208,1235]" captionTargetId="figure-231@5.[533,1447,208,1235]" captionTargetPageId="5" captionText="Fig 2. Neighbour-joining tree showing all available DNA barcodes for species in family Pteropodidae reported from Peninsular Malaysia. The percentage of pseudoreplicate trees (±70%) in which the DNA barcodes clustered together in the bootstrap test (500 pseudoreplicates) are shown above the branches. Abbreviation as follows: PM = Peninsular Malaysia, VN = Vietnam, JV = Java, Indonesia, BN = Borneo (including Sabah, Sarawak, Brunei and Kalimantan), TH = Thailand, LA = Laos. https://doi.org/10.1371/journal.pone.0179555.g002" figureDoi="http://doi.org/10.5281/zenodo.4251358" httpUri="https://zenodo.org/record/4251358/files/figure.png" pageId="8" pageNumber="9">Fig 2</figureCitation>
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).
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</paragraph>
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</subSubSection>
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<subSubSection box="[565,896,1282,1306]" pageId="8" pageNumber="9" type="discussion">
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<paragraph blockId="8.[533,1532,935,1480]" box="[565,896,1282,1306]" pageId="8" pageNumber="9">
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<emphasis bold="true" box="[565,710,1282,1306]" pageId="8" pageNumber="9">IUCN status:</emphasis>
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Near Threatened
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</paragraph>
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</subSubSection>
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<subSubSection pageId="8" pageNumber="9" type="distribution">
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<paragraph blockId="8.[533,1532,935,1480]" pageId="8" pageNumber="9">
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<emphasis bold="true" box="[565,794,1317,1341]" pageId="8" pageNumber="9">
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Recorded at:
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<collectingRegion box="[711,794,1317,1341]" country="Malaysia" name="Pahang" pageId="8" pageNumber="9">Pahang</collectingRegion>
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</emphasis>
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: Krau Wildlife Reserve [
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<bibRefCitation author="Kingston T & Lim BL & Akbar Z." box="[1054,1079,1317,1341]" journalOrPublisher="Penerbit Universiti Kebangsaan Malaysia" pageId="8" pageNumber="9" refId="ref38130" refString="11. Kingston T, Lim BL, Akbar Z. Bats of Krau wildlife reserve. Penerbit Universiti Kebangsaan Malaysia; 2006." title="Bats of Krau wildlife reserve" type="book" year="2006">11</bibRefCitation>
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,
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<bibRefCitation author="Anan S & Rashdi AM & Abdul J & Lim BL" box="[1092,1117,1317,1341]" journalOrPublisher="Journal of Wildlife and Parks." pageId="8" pageNumber="9" pagination="104 - 109" part="16" refId="ref39565" refString="42. Anan S, Rashdi AM, Abdul J, Lim BL. A survey of small mammals at Sungai Chenderoh, Perlok, Krau Wildlife Reserve, Pahang. Journal of Wildlife and Parks. 1998; 16: 104 - 109." title="A survey of small mammals at Sungai Chenderoh, Perlok, Krau Wildlife Reserve, Pahang" type="journal article" year="1998">42</bibRefCitation>
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];
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<emphasis bold="true" box="[1138,1202,1317,1341]" pageId="8" pageNumber="9">
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<collectingRegion box="[1138,1202,1317,1341]" country="Malaysia" name="Perak" pageId="8" pageNumber="9">Perak</collectingRegion>
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</emphasis>
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: Temengor Forest Reserve [
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<bibRefCitation author="Francis CM" box="[1500,1525,1317,1341]" journalOrPublisher="Mal Nat J." pageId="8" pageNumber="9" pagination="403 - 408" part="48" refId="ref39732" refString="46. Francis CM. The diversity of bats in Temengor Forest Reserve, Hulu Perak, Malaysia. Mal Nat J. 1995; 48: 403 - 408." title="The diversity of bats in Temengor Forest Reserve, Hulu Perak, Malaysia" type="journal article" year="1995">46</bibRefCitation>
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,
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<bibRefCitation author="Shahfiz MA & Shahrul-Anuar MA & Kaviarasu M & Fauzi MZ & Rizal MR" box="[533,558,1352,1376]" editor="Mohamed AL & Krishnapillay DB & Kasim Z & Khushairi ZA & Ismail NI & Rezan EFN & Sadali A & Mohammad MS & Hassan MN & Aznan ARY" journalOrPublisher="Pulau Banding Foundation, Malaysia" pageId="8" pageNumber="9" pagination="22 - 25" part="2012" refId="ref39763" refString="47. Shahfiz MA, Shahrul-Anuar MA, Kaviarasu M, Fauzi MZ, Rizal MR. Preliminary checklist of mammals at Sungai Enam in Temengor Forest Reserve, Perak, Peninsular Malaysia In: Mohamed AL, Krishnapillay DB, Kasim Z, Khushairi ZA, Ismail NI, Rezan EFN, Sadali A, Mohammad MS, Hassan MN, Aznan ARY, editors. Proceedings of the 2 nd Temengor Scientific Expedition 2012, 22 - 25 August 2013. Pulau Banding Foundation, Malaysia; 2013." title="Preliminary checklist of mammals at Sungai Enam in Temengor Forest Reserve, Perak, Peninsular Malaysia" type="book chapter" volumeTitle="Proceedings of the 2 nd Temengor Scientific Expedition" year="2013">47</bibRefCitation>
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];
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<emphasis bold="true" box="[580,677,1352,1376]" pageId="8" pageNumber="9">
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<collectingRegion box="[580,677,1352,1376]" country="Malaysia" name="Selangor" pageId="8" pageNumber="9">Selangor</collectingRegion>
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</emphasis>
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: Bukit Kutu Wildlife Reserve [
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<bibRefCitation author="Lim BL & Majid RA & Norsham Y." box="[1001,1026,1352,1376]" journalOrPublisher="Journal of Wildlife and Parks." pageId="8" pageNumber="9" pagination="1 - 6" part="17" refId="ref40034" refString="51. Lim BL, Majid RA, Norsham Y. Studies on the mammal fauna of Bukit Kutu Wildlife reserve, Hulu Selangor. Journal of Wildlife and Parks. 1999; 17: 1 - 6." title="Studies on the mammal fauna of Bukit Kutu Wildlife reserve, Hulu Selangor" type="journal article" year="1999">51</bibRefCitation>
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], Sungai Dusun Forest Reserve [
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<bibRefCitation author="Mohd-Hanif RM & Nur-Aida MT & Zahirunisa AR & Mohd-Ridwan AR & Abdullah MT" box="[1373,1398,1352,1376]" journalOrPublisher="J Trop For Sci." pageId="8" pageNumber="9" pagination="506 - 16" part="27" refId="ref40227" refString="56. Mohd-Hanif RM, Nur-Aida MT, Zahirunisa AR, Mohd-Ridwan AR, Abdullah MT. Contribution of regenerated forest in conservation of bats in Peninsular Malaysia. J Trop For Sci. 2015; 27 (4): 506 - 16." title="Contribution of regenerated forest in conservation of bats in Peninsular Malaysia" type="journal article" year="2015">56</bibRefCitation>
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];
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<emphasis bold="true" box="[1419,1491,1352,1376]" pageId="8" pageNumber="9">
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<collectingRegion box="[1419,1491,1352,1376]" country="Malaysia" name="Kedah" pageId="8" pageNumber="9">Kedah</collectingRegion>
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</emphasis>
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: Ulu Muda Forest Reserve [
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<bibRefCitation author="Norsham Y & Shariff F & Norhayati A & Nordin M & Lim BL" box="[818,843,1386,1410]" journalOrPublisher="Journal of Wildlife and Parks." pageId="8" pageNumber="9" pagination="28 - 43" part="17" refId="ref40272" refString="57. Norsham Y, Shariff F, Norhayati A, Nordin M, Lim BL. Pre-logging survey of mammal fauna at Sungai Weng sub-catchment, Ulu Muda Forest Reserve Forest Reserve, Kedah. Journal of Wildlife and Parks. 1999; 17: 28 - 43." title="Pre-logging survey of mammal fauna at Sungai Weng sub-catchment, Ulu Muda Forest Reserve Forest Reserve, Kedah" type="journal article" year="1999">57</bibRefCitation>
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].
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</paragraph>
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</subSubSection>
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<subSubSection pageId="8" pageNumber="9" type="discussion">
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<paragraph blockId="8.[533,1532,935,1480]" pageId="8" pageNumber="9">
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<taxonomicName authorityName="Thomas" authorityYear="1890" box="[565,694,1421,1445]" class="Mammalia" family="Pteropodidae" genus="Cynopterus" kingdom="Animalia" order="Chiroptera" pageId="8" pageNumber="9" phylum="Chordata" rank="species" species="spadiceus">
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<emphasis box="[565,584,1421,1444]" italics="true" pageId="8" pageNumber="9">D</emphasis>
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.
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<emphasis box="[596,694,1421,1445]" italics="true" pageId="8" pageNumber="9">spadiceus</emphasis>
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</taxonomicName>
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roosts in tree cavities and ferns and has been recorded in lowland, hill and montane forests, and nearby limetone caves [11, 14. 22].
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |