162 lines
11 KiB
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162 lines
11 KiB
XML
<document ID-DOI="10.1099/ijsem.0.004945" ID-GBIF-Dataset="216b98f8-95b8-4abc-b748-191e0e84bd35" ID-ISSN="1466-5034" ID-PMC="PMC8513617" ID-PubMed="34379584" ID-Zenodo-Dep="6224170" checkinTime="1645466238162" checkinUser="felipe" docAuthor="Bird, Lina J., Kuenen, J. Gijs, Osburn, Magdalena R., Tomioka, Naotaka, Ishii, Shun’ichi, Barr, Casey, Nealson, Kenneth H. & Suzuki, Shino" docDate="2021" docId="03A8F76C93557428FC8FFF16FAC9C521" docLanguage="en" docName="IntJSystEvolMicrobiol.71.8.004945.pdf" docOrigin="International Journal of Systematic and Evolutionary Microbiology (004945) 71 (8)" docSource="http://dx.doi.org/10.1099/ijsem.0.004945" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.2:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="2" docTitle="Serpentinimonas Bird & Kuenen & Osburn & Tomioka & Ishii & Barr & Nealson & Suzuki 2021, GEN. NOV." docType="treatment" docVersion="4" lastPageNumber="8" masterDocId="FF918F149352742FFFB3FFAEFFB6C655" masterDocTitle="Serpentinimonas gen. nov., Serpentinimonas raichei sp. nov., Serpentinimonas barnesii sp. nov. and Serpentinimonas maccroryi sp. nov., hyperalkaliphilic and facultative autotrophic bacteria isolated from terrestrial serpentinizing springs" masterLastPageNumber="10" masterPageNumber="1" pageNumber="8" updateTime="1668130833024" updateUser="ExternalLinkService">
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<mods:mods xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo>
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<mods:title>Serpentinimonas gen. nov., Serpentinimonas raichei sp. nov., Serpentinimonas barnesii sp. nov. and Serpentinimonas maccroryi sp. nov., hyperalkaliphilic and facultative autotrophic bacteria isolated from terrestrial serpentinizing springs</mods:title>
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</mods:titleInfo>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Bird, Lina J.</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Kuenen, J. Gijs</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Osburn, Magdalena R.</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Tomioka, Naotaka</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Ishii, Shun’ichi</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Barr, Casey</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Nealson, Kenneth H.</mods:namePart>
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</mods:name>
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<mods:name type="personal">
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<mods:role>
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<mods:roleTerm>Author</mods:roleTerm>
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</mods:role>
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<mods:namePart>Suzuki, Shino</mods:namePart>
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</mods:name>
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<mods:typeOfResource>text</mods:typeOfResource>
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<mods:title>International Journal of Systematic and Evolutionary Microbiology</mods:title>
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</mods:titleInfo>
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<mods:part>
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<mods:date>2021</mods:date>
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<mods:detail type="series">
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<mods:title>004945</mods:title>
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</mods:detail>
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<mods:detail type="pubDate">
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<mods:number>2021-08-11</mods:number>
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</mods:detail>
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<mods:detail type="volume">
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<mods:number>71</mods:number>
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</mods:detail>
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<mods:detail type="issue">
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<mods:number>8</mods:number>
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<mods:start>1</mods:start>
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<mods:end>10</mods:end>
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<mods:location>
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<mods:url>http://dx.doi.org/10.1099/ijsem.0.004945</mods:url>
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</mods:location>
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<mods:classification>journal article</mods:classification>
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<mods:identifier type="DOI">10.1099/ijsem.0.004945</mods:identifier>
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<mods:identifier type="GBIF-Dataset">216b98f8-95b8-4abc-b748-191e0e84bd35</mods:identifier>
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<mods:identifier type="ISSN">1466-5034</mods:identifier>
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<mods:identifier type="PMC">PMC8513617</mods:identifier>
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<mods:identifier type="PubMed">34379584</mods:identifier>
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<mods:identifier type="Zenodo-Dep">6224170</mods:identifier>
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<treatment ID-GBIF-Taxon="193580165" LSID="urn:lsid:plazi:treatment:03A8F76C93557428FC8FFF16FAC9C521" httpUri="http://treatment.plazi.org/id/03A8F76C93557428FC8FFF16FAC9C521" lastPageNumber="8" pageId="7" pageNumber="8">
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<subSubSection pageId="7" pageNumber="8" type="nomenclature">
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<paragraph blockId="7.[826,1468,184,885]" pageId="7" pageNumber="8">
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<heading allCaps="true" bold="true" fontSize="12" level="2" pageId="7" pageNumber="8" reason="3">
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<emphasis bold="true" box="[828,1348,184,213]" pageId="7" pageNumber="8">
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DESCRIPTION OF
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<taxonomicName authority="Bird & Kuenen & Osburn & Tomioka & Ishii & Barr & Nealson & Suzuki, 2021" authorityName="Bird & Kuenen & Osburn & Tomioka & Ishii & Barr & Nealson & Suzuki" authorityYear="2021" box="[1077,1348,184,213]" class="Gammaproteobacteria" family="Burkholderiaceae" genus="Serpentinimonas" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Burkholderiales" pageId="7" pageNumber="8" phylum="Proteobacteria" rank="genus" status="GEN. NOV.">
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<emphasis bold="true" box="[1077,1348,184,213]" italics="true" pageId="7" pageNumber="8">SERPENTINIMONAS</emphasis>
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</taxonomicName>
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</emphasis>
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<emphasis bold="true" pageId="7" pageNumber="8">
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<taxonomicNameLabel pageId="7" pageNumber="8" rank="genus">GEN. NOV.</taxonomicNameLabel>
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</emphasis>
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection pageId="7" pageNumber="8" type="etymology">
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<paragraph blockId="7.[826,1468,184,885]" pageId="7" pageNumber="8">
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<taxonomicName authorityName="Bird & Kuenen & Osburn & Tomioka & Ishii & Barr & Nealson & Suzuki" authorityYear="2021" box="[828,1010,263,287]" class="Gammaproteobacteria" family="Burkholderiaceae" genus="Serpentinimonas" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Burkholderiales" pageId="7" pageNumber="8" phylum="Proteobacteria" rank="genus">Serpentinimonas</taxonomicName>
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(Ser.pen.ti.ni.mo′ nas. N.L. neut. n.
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<emphasis italics="true" pageId="7" pageNumber="8">serpentinum</emphasis>
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a dark green mineral produced from reaction of olivine with water; L. fem n.
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<emphasis box="[1059,1128,325,348]" italics="true" pageId="7" pageNumber="8">monas</emphasis>
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a shape, a monad; N.L. fem. n.
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<taxonomicName authorityName="Bird & Kuenen & Osburn & Tomioka & Ishii & Barr & Nealson & Suzuki" authorityYear="2021" box="[828,1003,355,378]" class="Gammaproteobacteria" family="Burkholderiaceae" genus="Serpentinimonas" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Burkholderiales" pageId="7" pageNumber="8" phylum="Proteobacteria" rank="genus">
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<emphasis box="[828,1003,355,378]" italics="true" pageId="7" pageNumber="8">Serpentinimonas</emphasis>
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</taxonomicName>
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, a monad from a serpentinizing site.).
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</paragraph>
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</subSubSection>
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<subSubSection pageId="7" pageNumber="8" type="reference_group">
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<paragraph blockId="7.[826,1468,184,885]" pageId="7" pageNumber="8">
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Cells are Gram-stain-negative, rod shaped, motile cells 1–3 µm long, with a single polar flagellum. Organisms in this genus form small light-coloured (opaque creamy) colonies on plates (<
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<quantity box="[961,1020,493,517]" metricMagnitude="-3" metricUnit="m" metricValue="1.0" pageId="7" pageNumber="8" unit="mm" value="1.0">1mm</quantity>
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). Optimum growth occurs at 30°C at pH 11. Preferred media is without NaCl. Cells are catalase positive and sensitive to the antibiotics, kanamycin (50 µg
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<superScript attach="left" box="[1412,1457,552,578]" fontSize="6" pageId="7" pageNumber="8">ml−1</superScript>
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) and gentamicin (10 µg
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<superScript attach="left" box="[1075,1121,583,609]" fontSize="6" pageId="7" pageNumber="8">ml−1</superScript>
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). Fatty acid profiles are simple, containing primarily C
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<subScript attach="left" box="[1066,1093,631,646]" fontSize="6" pageId="7" pageNumber="8">16:0</subScript>
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, C
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<subScript attach="both" box="[1121,1147,631,645]" fontSize="6" pageId="7" pageNumber="8">16:1</subScript>
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ω7
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<emphasis box="[1178,1188,616,639]" italics="true" pageId="7" pageNumber="8">c</emphasis>
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, C
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<subScript attach="left" box="[1216,1246,631,645]" fontSize="6" pageId="7" pageNumber="8">18:0,</subScript>
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C
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<subScript attach="both" box="[1267,1293,631,645]" fontSize="6" pageId="7" pageNumber="8">18:1</subScript>
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ω7
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<emphasis box="[1324,1334,616,639]" italics="true" pageId="7" pageNumber="8">c</emphasis>
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and C
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<subScript attach="both" box="[1400,1426,631,645]" fontSize="6" pageId="7" pageNumber="8">19:1</subScript>
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ω6
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<emphasis box="[1456,1466,616,639]" italics="true" pageId="7" pageNumber="8">c</emphasis>
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fatty acids as well as linear hydrocarbons. Respiratory quinone was ubiquinone. Phylogenetically, the genus is a member of the
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<taxonomicName box="[899,1094,707,731]" class="Gammaproteobacteria" family="Comamonadaceae" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Burkholderiales" pageId="7" pageNumber="8" phylum="Proteobacteria" rank="family">
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<emphasis box="[899,1094,707,731]" italics="true" pageId="7" pageNumber="8">Comamonadaceae</emphasis>
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</taxonomicName>
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. Although we proposed the novel strains as the new genus candidatus ‘Serpentinomonas’ in our previous publication, the genus name is inappropriate as Latin name, based on the publication written by H.G. Trüper [
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<bibRefCitation author="Truper GH" box="[1423,1455,799,823]" pageId="7" pageNumber="8" pagination="231 - 249" refId="ref8639" refString="39. Truper GH. How to name a prokaryote?: Etymological considerations, proposals and practical advice in prokaryote nomenclature. FEMS Microbiology Reviews 1999; 22: 231 - 249." type="journal article" year="1999">39</bibRefCitation>
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]. Therefore, here we propose the new genus name as
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<taxonomicName authorityName="Bird & Kuenen & Osburn & Tomioka & Ishii & Barr & Nealson & Suzuki" authorityYear="2021" class="Gammaproteobacteria" family="Burkholderiaceae" genus="Serpentinimonas" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Burkholderiales" pageId="7" pageNumber="8" phylum="Proteobacteria" rank="genus">Serpentinimonas</taxonomicName>
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. The
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<typeStatus box="[994,1040,861,885]" pageId="7" pageNumber="8">type</typeStatus>
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species is
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<taxonomicName authorityName="Bird & Kuenen & Osburn & Tomioka & Ishii & Barr & Nealson & Suzuki" authorityYear="2021" box="[1150,1401,861,885]" class="Gammaproteobacteria" family="Burkholderiaceae" genus="Serpentinimonas" higherTaxonomySource="GBIF" kingdom="Bacteria" order="Burkholderiales" pageId="7" pageNumber="8" phylum="Proteobacteria" rank="species" species="raichei">
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<emphasis box="[1150,1401,861,885]" italics="true" pageId="7" pageNumber="8">Serpentinimonas raichei</emphasis>
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</taxonomicName>
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.
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</paragraph>
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</subSubSection>
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</treatment>
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</document> |