183 lines
17 KiB
XML
183 lines
17 KiB
XML
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<mods:title id="16A78641C1F530BAB80F3FA33932455F">Emendation of the Genus Auritidibacter Yassin et al. 2011 and Auritidibacter ignavus Yassin et al. 2011 based on features observed from Canadian and Swiss clinical isolates and wholegenome sequencing analysis</mods:title>
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<mods:namePart id="884824F58CFB477ACC6A0B95D958F3DE">Bernard, K. A.</mods:namePart>
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<mods:date id="4577D0BFBAC8B75A83F28A76E346E616">2020</mods:date>
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<treatment id="CA228225FF83BF05925D2D0DE59F57C9" ID-DOI="http://doi.org/10.5281/zenodo.6310643" ID-GBIF-Taxon="193365420" ID-Zenodo-Dep="6310643" LSID="urn:lsid:plazi:treatment:CA228225FF83BF05925D2D0DE59F57C9" httpUri="http://treatment.plazi.org/id/CA228225FF83BF05925D2D0DE59F57C9" lastPageId="4" lastPageNumber="87" pageId="3" pageNumber="86">
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<subSubSection id="0A9160B8FF83BF02925D2D0DE180550D" pageId="3" pageNumber="86" type="nomenclature">
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<emphasis id="70FFEF21FF83BF02925D2D0DE180550D" bold="true" pageId="3" pageNumber="86">
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EMENDED DESCRIPTION OF
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<taxonomicName id="858B48B0FF83BF0295AA2D0DE180550D" ID-CoL="689HX" authority="YASSIN ET AL. 2011" authorityName="Yassin" authorityYear="2011" class="Actinobacteridae" family="Micrococcaceae" genus="Auritidibacter" kingdom="Bacteria" order="Actinomycetales" pageId="3" pageNumber="83" phylum="Actinobacteria" rank="species" species="ignavus">
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<emphasis id="70FFEF21FF83BF0295AA2D0DE6E2550D" bold="true" italics="true" pageId="3" pageNumber="86">AURITIDIBACTER IGNAVUS</emphasis>
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YASSIN
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<emphasis id="70FFEF21FF83BF0295532D63E1D0550D" bold="true" box="[1074,1163,1354,1383]" italics="true" pageId="3" pageNumber="86">ET AL.</emphasis>
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2011
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</taxonomicName>
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</emphasis>
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</paragraph>
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<subSubSection id="0A9160B8FF83BF02925D2D5DE6C455C0" pageId="3" pageNumber="86" type="etymology">
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<paragraph id="42343333FF83BF02925D2D5DE6C455C0" blockId="3.[826,1472,1316,1956]" pageId="3" pageNumber="86">
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<taxonomicName id="858B48B0FF83BF02925D2D5DE16855E1" box="[828,1075,1396,1420]" class="Actinobacteridae" family="Micrococcaceae" genus="Auritidibacter" kingdom="Bacteria" order="Actinomycetales" pageId="3" pageNumber="86" phylum="Actinobacteria" rank="species" species="ignavus">
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<emphasis id="70FFEF21FF83BF02925D2D5DE16855E1" box="[828,1075,1396,1420]" italics="true" pageId="3" pageNumber="86">Auritidibacter ignavus</emphasis>
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</taxonomicName>
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(ig.na′ vus. L. masc. adj. ignavus inactive).
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</paragraph>
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<subSubSection id="0A9160B8FF83BF05925D2DE9E414560F" lastPageId="4" lastPageNumber="87" pageId="3" pageNumber="86" type="description">
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<paragraph id="42343333FF83BF05925D2DE9E414560F" blockId="3.[826,1472,1316,1956]" lastBlockId="4.[121,760,1478,1637]" lastPageId="4" lastPageNumber="87" pageId="3" pageNumber="86">
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In addition to properties described for the emended genus or as described for
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<taxonomicName id="858B48B0FF83BF0295782DF6E1D7559C" box="[1049,1164,1503,1526]" class="Actinobacteridae" family="Micrococcaceae" genus="Auritidibacter" kingdom="Bacteria" order="Actinomycetales" pageId="3" pageNumber="86" phylum="Actinobacteria" rank="species" species="ignavus">
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<emphasis id="70FFEF21FF83BF0295782DF6E1D7559C" box="[1049,1164,1503,1526]" italics="true" pageId="3" pageNumber="86">A. ignavus</emphasis>
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</taxonomicName>
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by Yassin
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<emphasis id="70FFEF21FF83BF0294672DF6E06F559D" box="[1286,1332,1503,1527]" italics="true" pageId="3" pageNumber="86">et al</emphasis>
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. [
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<bibRefCitation id="261A4EC2FF83BF02942C2DF6E001559D" author="Yassin AF & Hupfer H & Siering C & Klenk HP & Schumann P." box="[1357,1370,1503,1527]" pageId="3" pageNumber="86" pagination="223 - 230" refId="ref4758" refString="1. Yassin AF, Hupfer H, Siering C, Klenk HP, Schumann P. Auritidibacter ignavus gen. nov., sp. nov., of the family Micrococcaceae isolated from an ear swab of a man with otitis externa, transfer of the members of the family Yaniellaceae Li et al. 2008 to the family Micrococcaceae and emended description of the suborder Micrococcineae. Int J Syst Evol Microbiol 2011; 61: 223 - 230." type="journal article" year="2011">1</bibRefCitation>
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], strains may show the following characteristics: cells measure 1.85±0.45 µm in length and have a width of 0.44±0.05 µm. May assimilate substrate at pH 6. Reduction of nitrite not observed. Vogues–Proskauer (acetoin) production, DNase and starch hydrolyses are variable. Pyrrolidonyl arylamidase, esterase, leucine arylamidase and naphthol-AS-BIphosphohydrolase are variable. Isolates may grow at 42 °C and not at 25 °C. Isolates neither ferment nor assimilate conventional sugars nor those found in API panels. Using the Biolog panel, isolates may be positive or borderline positive for the utilization of dextrin, L-glutamic acid,L-pyroglutamic acid,
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<emphasis id="70FFEF21FF83BF02925D2F66E612570C" box="[828,841,1871,1894]" italics="true" pageId="3" pageNumber="86">p</emphasis>
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-hydroxyphenylacetic acid, D-galacturonic acid, L-lactic acid, Tween 40, Ɣ- aminobutyric acid, α-hydroxybutyric acid, β-hydroxy-DL-butyric acid, α-ketobutyric acid and acetic acid. In sensitivity tests, tetrazolium dyes may be reduced at pH 6, in 1%, 4%, and 8% NaCl, nalidixic acid, lithium chloride, potassium tellurite, aztreonam, sodium butyrate and sodium bromate. The remaining substrates are variably utilized or not used.
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</paragraph>
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<caption id="16F463BBFF84BF0591D82CCAE67C550B" ID-DOI="http://doi.org/10.5281/zenodo.6048672" ID-Zenodo-Dep="6048672" httpUri="https://zenodo.org/record/6048672/files/figure.png" pageId="4" pageNumber="87" startId="4.[185,216,1251,1270]" targetBox="[279,1308,185,1199]" targetPageId="4">
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<paragraph id="42343333FF84BF0591D82CCAE67C550B" blockId="4.[185,1403,1251,1377]" pageId="4" pageNumber="87">
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<emphasis id="70FFEF21FF84BF0591D82CCAE5AA549C" bold="true" box="[185,241,1251,1270]" pageId="4" pageNumber="87">Fig. 1.</emphasis>
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Phylogenetic consensus tree based on nearly full-length 16S rRNA gene sequences. Phylogeny reconstructed with neighbourjoining (NJ), maximum-likelihood (ML) and maximum parsimony algorithms with NJ/ML/MP data respectively shown at nodes for type strains of type species of genera assigned to the family
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<taxonomicName id="858B48B0FF84BF0593942D30E6245546" authorityName="Pribram" authorityYear="1929" box="[757,895,1305,1324]" class="Actinobacteridae" family="Micrococcaceae" kingdom="Bacteria" order="Actinomycetales" pageId="4" pageNumber="87" phylum="Actinobacteria" rank="family">
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<emphasis id="70FFEF21FF84BF0593942D30E6245546" box="[757,895,1305,1324]" italics="true" pageId="4" pageNumber="87">Micrococcaceae</emphasis>
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</taxonomicName>
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. The tree was calculated using MEGA X based on 1000 resamplings (bootstrap analysis, with only values ≥70% shown). Bar, 0.01 (NJ) or 0.02 (ML) substitutions per nucleotide position.The type strain of
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<taxonomicName id="858B48B0FF84BF0590682D67E488550B" authorityName="Bergey et al." authorityYear="1923" baseAuthorityName="Kellerman & McBeth" baseAuthorityYear="1912" box="[265,467,1358,1377]" class="Actinobacteridae" family="Cellulomonadaceae" genus="Cellulomonas" kingdom="Bacteria" order="Actinomycetales" pageId="4" pageNumber="87" phylum="Actinobacteria" rank="species" species="flavigena">
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<emphasis id="70FFEF21FF84BF0590682D67E488550B" box="[265,467,1358,1377]" italics="true" pageId="4" pageNumber="87">Cellulomonas flavigena</emphasis>
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</taxonomicName>
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was included as an unrelated outlier.
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</paragraph>
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</caption>
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<subSubSection id="0A9160B8FF84BF0591182E57E59F57C9" pageId="4" pageNumber="87" type="materials_examined">
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<paragraph id="42343333FF84BF0591182E57E59F57C9" blockId="4.[121,760,1662,1955]" pageId="4" pageNumber="87">
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Isolates have been obtained from ear infections from patients located in Germany, Switzerland and
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<collectingCountry id="3A9C73A3FF84BF0593152EB6E79356DD" box="[628,712,1695,1719]" name="Canada" pageId="4" pageNumber="87">Canada</collectingCountry>
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and detected by DNA sequencing from a bacteremia in
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<collectingCountry id="3A9C73A3FF84BF0593D52EE8E7AF56B3" box="[692,756,1729,1753]" name="Spain" pageId="4" pageNumber="87">Spain</collectingCountry>
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.
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<taxonomicName id="858B48B0FF84BF0591182ECAE5B05691" authority="NML" authorityName="NML" box="[121,235,1763,1787]" class="Actinobacteridae" family="Micrococcaceae" genus="Auritidibacter" kingdom="Bacteria" order="Actinomycetales" pageId="4" pageNumber="87" phylum="Actinobacteria" rank="species" species="ignavus">
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<emphasis id="70FFEF21FF84BF0591182ECAE5B05691" box="[121,235,1763,1787]" italics="true" pageId="4" pageNumber="87">A. ignavus</emphasis>
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</taxonomicName>
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NML 100628 has been deposited in two culture collections (NCTC 14178=LMG 30897) to serve as an additional reference strain for this species. The genomic DNA G+C content of the type strain (
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<taxonomicName id="858B48B0FF84BF0590842F61E702570A" authority="DSM" authorityName="Bernard & Pacheco & Burdz & Wiebe & Beniac & Hiebert & Booth & Jakopp & Goldenberger & Seth-Smith & Egli & Bernier" authorityYear="2020" box="[485,601,1864,1888]" class="Actinobacteridae" family="Micrococcaceae" genus="Auritidibacter" kingdom="Bacteria" order="Actinomycetales" pageId="4" pageNumber="87" phylum="Actinobacteria" rank="species" species="ignavus">
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<emphasis id="70FFEF21FF84BF0590842F61E702570A" box="[485,601,1864,1888]" italics="true" pageId="4" pageNumber="87">A. ignavus</emphasis>
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</taxonomicName>
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DSM 45359
|
||
<superScript id="B5FE9E7BFF84BF0593842F6EE7B4573F" attach="none" box="[741,751,1863,1877]" fontSize="6" pageId="4" pageNumber="87">T</superScript>
|
||
) is 59.3% with those of other strains ranging from 59.4 to 59.5%.
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |