642 lines
58 KiB
XML
642 lines
58 KiB
XML
<document ID-DOI="http://dx.doi.org/10.3897/BDJ.3.e7074" ID-PMC="PMC4698455" ID-Pensoft-Pub="1314-2828--7074" ID-PubMed="26751633" ModsDocAuthor="" ModsDocDate="2015" ModsDocID="1314-2828--e7074" ModsDocOrigin="Biodiversity Data Journal " ModsDocTitle="Description of a species of Fabaeformiscandona (Ostracoda, Crustacea) from Kushiro Marsh, Hokkaido, Japan, with the nearly complete mitochondrial genomic sequence" checkinTime="1585357587017" checkinUser="pensoft" docAuthor="Hiruta, Shimpei F. & Hiruta, Shin-ichi" docDate="2015" docId="6BC411FD3448FC4A2C8FE9C2B7786A9D" docLanguage="en" docName="BiodivDatJour 3: e7074" docOrigin="Biodiversity Data Journal 3" docSource="http://dx.doi.org/10.3897/BDJ.3.e7074" docTitle="Fabaeformiscandona kushiroensis Hiruta & Hiruta, sp. n." docType="treatment" docVersion="3" lastPageNumber="7074" masterDocId="FFC6FFB5FF86FFD57B437A271145FFB7" masterDocTitle="Description of a species of Fabaeformiscandona (Ostracoda, Crustacea) from Kushiro Marsh, Hokkaido, Japan, with the nearly complete mitochondrial genomic sequence" masterLastPageNumber="7074" masterPageNumber="7074" pageNumber="7074" updateTime="1668126755566" updateUser="ExternalLinkService">
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<mods:titleInfo>
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<mods:title>Description of a species of Fabaeformiscandona (Ostracoda, Crustacea) from Kushiro Marsh, Hokkaido, Japan, with the nearly complete mitochondrial genomic sequence</mods:title>
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<mods:namePart>Hiruta, Shimpei F.</mods:namePart>
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<mods:namePart>Hiruta, Shin-ichi</mods:namePart>
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<mods:title>Biodiversity Data Journal</mods:title>
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<mods:part>
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<mods:date>2015</mods:date>
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<mods:number>3</mods:number>
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<mods:identifier type="DOI">http://dx.doi.org/10.3897/BDJ.3.e7074</mods:identifier>
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<paragraph pageId="0" pageNumber="7074">Materials</paragraph>
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<collectionCode pageId="0" pageNumber="7074">Invertebrate Collection of the Hokkaido University Museum (ICHUM)</collectionCode>
|
||
; collectionCode:
|
||
<collectionCode pageId="0" pageNumber="7074">Ostracoda</collectionCode>
|
||
; basisOfRecord: PreservedSpecimen
|
||
</materialsCitation>
|
||
<materialsCitation collectingDate="2012-12-27" collectingMethod="Strained by 0.1 mm mesh sieve" collectionCode="Invertebrate Collection of the Hokkaido University Museum (ICHUM), Ostracoda" collectorName="Shimpei F. Hiruta" country="Japan" latitude="43.105" location="Kushiro Marsh National Park, Hokkaido, Japan" longitude="144.3291" pageId="0" pageNumber="7074" specimenCode="ICHUM _ 5040" specimenCount="1" specimenCount-female="1" typeStatus="Paratype">
|
||
Type status:
|
||
<typeStatus pageId="0" pageNumber="7074">Paratype</typeStatus>
|
||
. Occurrence: catalogNumber:
|
||
<specimenCode pageId="0" pageNumber="7074">ICHUM_5040</specimenCode>
|
||
; recordedBy:
|
||
<collectorName pageId="0" pageNumber="7074">Shimpei F. Hiruta</collectorName>
|
||
; individualCount:
|
||
<specimenCount pageId="0" pageNumber="7074">1</specimenCount>
|
||
; sex:
|
||
<specimenType pageId="0" pageNumber="7074">female</specimenType>
|
||
; lifeStage:
|
||
<specimenType pageId="0" pageNumber="7074">adult</specimenType>
|
||
; preparations: mounted on a stub for SEM observation; Taxon: scientificName: Fabaeformiscandonakushiroensis; Location: country:
|
||
<collectingCountry pageId="0" pageNumber="7074">Japan</collectingCountry>
|
||
; stateProvince: Hokkaido; locality:
|
||
<location LSID="urn:lsid:plazi:treatment:6BC411FD3448FC4A2C8FE9C2B7786A9D:5C029E28DA9829216FE9F32DB452121B" country="Japan" latitude="43.105" longitude="144.3291" name="Kushiro Marsh National Park, Hokkaido, Japan" pageId="0" pageNumber="7074">Kushiro Marsh National Park, Hokkaido, Japan</location>
|
||
; verbatimElevation:
|
||
<elevation pageId="0" pageNumber="7074">10 m</elevation>
|
||
; verbatimCoordinates: 43°6′17.6″N, 144°19′46.5″E; decimalLatitude:
|
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<geoCoordinate orientation="latitude" pageId="0" pageNumber="7074" value="43.105">43.105</geoCoordinate>
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|
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<geoCoordinate orientation="longitude" pageId="0" pageNumber="7074" value="144.3291">144.3291</geoCoordinate>
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; georeferenceProtocol: GPS; Identification: identifiedBy:
|
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<determinerName pageId="0" pageNumber="7074">Shimpei F. Hiruta</determinerName>
|
||
; dateIdentified: 2013; Event: samplingProtocol:
|
||
<collectingMethod pageId="0" pageNumber="7074">Strained by 0.1 mm mesh sieve</collectingMethod>
|
||
; eventDate:
|
||
<collectingDate pageId="0" pageNumber="7074" value="2012-12-27">12/27/2012</collectingDate>
|
||
; Record Level: language: en; collectionID: ICHUM 5040; institutionCode:
|
||
<collectionCode pageId="0" pageNumber="7074">Invertebrate Collection of the Hokkaido University Museum (ICHUM)</collectionCode>
|
||
; collectionCode:
|
||
<collectionCode pageId="0" pageNumber="7074">Ostracoda</collectionCode>
|
||
; basisOfRecord: PreservedSpecimen
|
||
</materialsCitation>
|
||
<materialsCitation collectingDate="2012-12-27" collectingMethod="Strained by 0.1 mm mesh sieve" collectionCode="Invertebrate Collection of the Hokkaido University Museum (ICHUM), Ostracoda" collectorName="Shimpei F. Hiruta" country="Japan" latitude="43.105" location="Kushiro Marsh National Park, Hokkaido, Japan" longitude="144.3291" pageId="0" pageNumber="7074" specimenCode="ICHUM _ 5041" specimenCount="1" specimenCount-female="1" typeStatus="Paratype">
|
||
Type status:
|
||
<typeStatus pageId="0" pageNumber="7074">Paratype</typeStatus>
|
||
. Occurrence: catalogNumber:
|
||
<specimenCode pageId="0" pageNumber="7074">ICHUM_5041</specimenCode>
|
||
; recordedBy:
|
||
<collectorName pageId="0" pageNumber="7074">Shimpei F. Hiruta</collectorName>
|
||
; individualCount:
|
||
<specimenCount pageId="0" pageNumber="7074">1</specimenCount>
|
||
; sex:
|
||
<specimenType pageId="0" pageNumber="7074">female</specimenType>
|
||
; lifeStage:
|
||
<specimenType pageId="0" pageNumber="7074">adult</specimenType>
|
||
; preparations: mounted on a stub for SEM observation; Taxon: scientificName: Fabaeformiscandonakushiroensis; Location: country:
|
||
<collectingCountry pageId="0" pageNumber="7074">Japan</collectingCountry>
|
||
; stateProvince: Hokkaido; locality:
|
||
<location LSID="urn:lsid:plazi:treatment:6BC411FD3448FC4A2C8FE9C2B7786A9D:288FB98ADD2853A5F022FDA7C5F74FF2" country="Japan" latitude="43.105" longitude="144.3291" name="Kushiro Marsh National Park, Hokkaido, Japan" pageId="0" pageNumber="7074">Kushiro Marsh National Park, Hokkaido, Japan</location>
|
||
; verbatimElevation:
|
||
<elevation pageId="0" pageNumber="7074">10 m</elevation>
|
||
; verbatimCoordinates: 43°6′17.6″N, 144°19′46.5″E; decimalLatitude:
|
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<geoCoordinate orientation="latitude" pageId="0" pageNumber="7074" value="43.105">43.105</geoCoordinate>
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; decimalLongitude:
|
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<geoCoordinate orientation="longitude" pageId="0" pageNumber="7074" value="144.3291">144.3291</geoCoordinate>
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; georeferenceProtocol: GPS; Identification: identifiedBy:
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<determinerName pageId="0" pageNumber="7074">Shimpei F. Hiruta</determinerName>
|
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; dateIdentified: 2013; Event: samplingProtocol:
|
||
<collectingMethod pageId="0" pageNumber="7074">Strained by 0.1 mm mesh sieve</collectingMethod>
|
||
; eventDate:
|
||
<collectingDate pageId="0" pageNumber="7074" value="2012-12-27">12/27/2012</collectingDate>
|
||
; Record Level: language: en; collectionID: ICHUM 5041; institutionCode:
|
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<collectionCode pageId="0" pageNumber="7074">Invertebrate Collection of the Hokkaido University Museum (ICHUM)</collectionCode>
|
||
; collectionCode:
|
||
<collectionCode pageId="0" pageNumber="7074">Ostracoda</collectionCode>
|
||
; basisOfRecord: PreservedSpecimen
|
||
</materialsCitation>
|
||
<materialsCitation collectingDate="2012-12-27" collectingMethod="Strained by 0.1 mm mesh sieve" collectionCode="Invertebrate Collection of the Hokkaido University Museum (ICHUM), Ostracoda" collectorName="Shimpei F. Hiruta" country="Japan" latitude="43.105" location="Kushiro Marsh National Park, Hokkaido, Japan" longitude="144.3291" pageId="0" pageNumber="7074" specimenCode="ICHUM _ 5042" specimenCount="1" specimenCount-female="1" typeStatus="Paratype">
|
||
Type status:
|
||
<typeStatus pageId="0" pageNumber="7074">Paratype</typeStatus>
|
||
. Occurrence: catalogNumber:
|
||
<specimenCode pageId="0" pageNumber="7074">ICHUM_5042</specimenCode>
|
||
; recordedBy:
|
||
<collectorName pageId="0" pageNumber="7074">Shimpei F. Hiruta</collectorName>
|
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; individualCount:
|
||
<specimenCount pageId="0" pageNumber="7074">1</specimenCount>
|
||
; sex:
|
||
<specimenType pageId="0" pageNumber="7074">female</specimenType>
|
||
; lifeStage:
|
||
<specimenType pageId="0" pageNumber="7074">adult</specimenType>
|
||
; preparations: mounted on a stub for SEM observation; Taxon: scientificName: Fabaeformiscandonakushiroensis; Location: country:
|
||
<collectingCountry pageId="0" pageNumber="7074">Japan</collectingCountry>
|
||
; stateProvince: Hokkaido; locality:
|
||
<location LSID="urn:lsid:plazi:treatment:6BC411FD3448FC4A2C8FE9C2B7786A9D:8573F9A0B6BEF747F163BE0726A8DBEF" country="Japan" latitude="43.105" longitude="144.3291" name="Kushiro Marsh National Park, Hokkaido, Japan" pageId="0" pageNumber="7074">Kushiro Marsh National Park, Hokkaido, Japan</location>
|
||
; verbatimElevation:
|
||
<elevation pageId="0" pageNumber="7074">10 m</elevation>
|
||
; verbatimCoordinates: 43°6′17.6″N, 144°19′46.5″E; decimalLatitude:
|
||
<geoCoordinate orientation="latitude" pageId="0" pageNumber="7074" value="43.105">43.105</geoCoordinate>
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; decimalLongitude:
|
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<geoCoordinate orientation="longitude" pageId="0" pageNumber="7074" value="144.3291">144.3291</geoCoordinate>
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; georeferenceProtocol: GPS; Identification: identifiedBy:
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<determinerName pageId="0" pageNumber="7074">Shimpei F. Hiruta</determinerName>
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; dateIdentified: 2013; Event: samplingProtocol:
|
||
<collectingMethod pageId="0" pageNumber="7074">Strained by 0.1 mm mesh sieve</collectingMethod>
|
||
; eventDate:
|
||
<collectingDate pageId="0" pageNumber="7074" value="2012-12-27">12/27/2012</collectingDate>
|
||
; Record Level: language: en; collectionID: ICHUM 5042; institutionCode:
|
||
<collectionCode pageId="0" pageNumber="7074">Invertebrate Collection of the Hokkaido University Museum (ICHUM)</collectionCode>
|
||
; collectionCode:
|
||
<collectionCode pageId="0" pageNumber="7074">Ostracoda</collectionCode>
|
||
; basisOfRecord: PreservedSpecimen
|
||
</materialsCitation>
|
||
<materialsCitation collectingDate="2012-12-27" collectingMethod="Strained by 0.1 mm mesh sieve" collectionCode="Invertebrate Collection of the Hokkaido University Museum (ICHUM), Ostracoda" collectorName="Shimpei F. Hiruta" country="Japan" latitude="43.105" location="Kushiro Marsh National Park, Hokkaido, Japan" longitude="144.3291" pageId="0" pageNumber="7074" specimenCode="ICHUM _ 5043" specimenCount="1" specimenCount-male="1" typeStatus="Paratype">
|
||
Type status:
|
||
<typeStatus pageId="0" pageNumber="7074">Paratype</typeStatus>
|
||
. Occurrence: catalogNumber:
|
||
<specimenCode pageId="0" pageNumber="7074">ICHUM_5043</specimenCode>
|
||
; recordedBy:
|
||
<collectorName pageId="0" pageNumber="7074">Shimpei F. Hiruta</collectorName>
|
||
; individualCount:
|
||
<specimenCount pageId="0" pageNumber="7074">1</specimenCount>
|
||
; sex:
|
||
<specimenType pageId="0" pageNumber="7074">male</specimenType>
|
||
; lifeStage:
|
||
<specimenType pageId="0" pageNumber="7074">adult</specimenType>
|
||
; preparations: exoskeleton mounted on a slide after DNA extraction; associatedSequences: GenBank: AP014656, AB996740; Taxon: scientificName: Fabaeformiscandonakushiroensis; Location: country:
|
||
<collectingCountry pageId="0" pageNumber="7074">Japan</collectingCountry>
|
||
; stateProvince: Hokkaido; locality:
|
||
<location LSID="urn:lsid:plazi:treatment:6BC411FD3448FC4A2C8FE9C2B7786A9D:5A9291BFD4D67E49B3F572BFF5D831C6" country="Japan" latitude="43.105" longitude="144.3291" name="Kushiro Marsh National Park, Hokkaido, Japan" pageId="0" pageNumber="7074">Kushiro Marsh National Park, Hokkaido, Japan</location>
|
||
; verbatimElevation:
|
||
<elevation pageId="0" pageNumber="7074">10 m</elevation>
|
||
; verbatimCoordinates: 43°6′17.6″N, 144°19′46.5″E; decimalLatitude:
|
||
<geoCoordinate orientation="latitude" pageId="0" pageNumber="7074" value="43.105">43.105</geoCoordinate>
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; decimalLongitude:
|
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<geoCoordinate orientation="longitude" pageId="0" pageNumber="7074" value="144.3291">144.3291</geoCoordinate>
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; georeferenceProtocol: GPS; Identification: identifiedBy:
|
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<determinerName pageId="0" pageNumber="7074">Shimpei F. Hiruta</determinerName>
|
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; dateIdentified: 2013; Event: samplingProtocol:
|
||
<collectingMethod pageId="0" pageNumber="7074">Strained by 0.1 mm mesh sieve</collectingMethod>
|
||
; eventDate:
|
||
<collectingDate pageId="0" pageNumber="7074" value="2012-12-27">12/27/2012</collectingDate>
|
||
; Record Level: language: en; collectionID: ICHUM 5043; institutionCode:
|
||
<collectionCode pageId="0" pageNumber="7074">Invertebrate Collection of the Hokkaido University Museum (ICHUM)</collectionCode>
|
||
; collectionCode:
|
||
<collectionCode pageId="0" pageNumber="7074">Ostracoda</collectionCode>
|
||
; basisOfRecord: PreservedSpecimen
|
||
</materialsCitation>
|
||
<materialsCitation collectingDate="2012-12-27" collectingMethod="Strained by 0.1 mm mesh sieve" collectionCode="Invertebrate Collection of the Hokkaido University Museum (ICHUM), Ostracoda" collectorName="Shimpei F. Hiruta" country="Japan" latitude="43.105" location="Kushiro Marsh National Park, Hokkaido, Japan" longitude="144.3291" pageId="0" pageNumber="7074" specimenCode="ICHUM _ 5044" specimenCount="50" typeStatus="Paratype">
|
||
Type status:
|
||
<typeStatus pageId="0" pageNumber="7074">Paratype</typeStatus>
|
||
. Occurrence: catalogNumber:
|
||
<specimenCode pageId="0" pageNumber="7074">ICHUM_5044</specimenCode>
|
||
; recordedBy:
|
||
<collectorName pageId="0" pageNumber="7074">Shimpei F. Hiruta</collectorName>
|
||
; individualCount:
|
||
<specimenCount pageId="0" pageNumber="7074">50</specimenCount>
|
||
; sex:
|
||
<specimenType pageId="0" pageNumber="7074">undetermined</specimenType>
|
||
; lifeStage:
|
||
<specimenType pageId="0" pageNumber="7074">adult</specimenType>
|
||
; preparations: exoskeleton preserved in 99% ethanol after DNA extraction; Taxon: scientificName: Fabaeformiscandonakushiroensis; Location: country:
|
||
<collectingCountry pageId="0" pageNumber="7074">Japan</collectingCountry>
|
||
; stateProvince: Hokkaido; locality:
|
||
<location LSID="urn:lsid:plazi:treatment:6BC411FD3448FC4A2C8FE9C2B7786A9D:AF4E33CB4A759E2C8B666663FD7BD65E" country="Japan" latitude="43.105" longitude="144.3291" name="Kushiro Marsh National Park, Hokkaido, Japan" pageId="0" pageNumber="7074">Kushiro Marsh National Park, Hokkaido, Japan</location>
|
||
; verbatimElevation:
|
||
<elevation pageId="0" pageNumber="7074">10 m</elevation>
|
||
; verbatimCoordinates: 43°6′17.6″N, 144°19′46.5″E; decimalLatitude:
|
||
<geoCoordinate orientation="latitude" pageId="0" pageNumber="7074" value="43.105">43.105</geoCoordinate>
|
||
; decimalLongitude:
|
||
<geoCoordinate orientation="longitude" pageId="0" pageNumber="7074" value="144.3291">144.3291</geoCoordinate>
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; georeferenceProtocol: GPS; Identification: identifiedBy:
|
||
<determinerName pageId="0" pageNumber="7074">Shimpei F. Hiruta</determinerName>
|
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; dateIdentified: 2013; Event: samplingProtocol:
|
||
<collectingMethod pageId="0" pageNumber="7074">Strained by 0.1 mm mesh sieve</collectingMethod>
|
||
; eventDate:
|
||
<collectingDate pageId="0" pageNumber="7074" value="2012-12-27">12/27/2012</collectingDate>
|
||
; Record Level: language: en; collectionID: ICHUM 5044; institutionCode:
|
||
<collectionCode pageId="0" pageNumber="7074">Invertebrate Collection of the Hokkaido University Museum (ICHUM)</collectionCode>
|
||
; collectionCode:
|
||
<collectionCode pageId="0" pageNumber="7074">Ostracoda</collectionCode>
|
||
; basisOfRecord: PreservedSpecimen
|
||
</materialsCitation>
|
||
<materialsCitation collectingDate="2012-12-27" collectingMethod="Strained by 0.1 mm mesh sieve" collectionCode="Invertebrate Collection of the Hokkaido University Museum (ICHUM), Ostracoda" collectorName="Shimpei F. Hiruta" country="Japan" latitude="43.105" location="Kushiro Marsh National Park, Hokkaido, Japan" longitude="144.3291" pageId="0" pageNumber="7074" specimenCode="ICHUM _ 5116" specimenCount="3" specimenCount-female="2" specimenCount-male="1" typeStatus="Paratype">
|
||
Type status:
|
||
<typeStatus pageId="0" pageNumber="7074">Paratype</typeStatus>
|
||
. Occurrence: catalogNumber:
|
||
<specimenCode pageId="0" pageNumber="7074">ICHUM_5116</specimenCode>
|
||
; recordedBy:
|
||
<collectorName pageId="0" pageNumber="7074">Shimpei F. Hiruta</collectorName>
|
||
; individualCount:
|
||
<specimenCount pageId="0" pageNumber="7074">3</specimenCount>
|
||
; sex:
|
||
<specimenCount type="male">1 male</specimenCount>
|
||
,
|
||
<specimenCount type="female">2 females</specimenCount>
|
||
; lifeStage:
|
||
<specimenType pageId="0" pageNumber="7074">adult</specimenType>
|
||
; preparations: mounted on a stub for SEM observation; Taxon: scientificName: Fabaeformiscandonakushiroensis; Location: country:
|
||
<collectingCountry pageId="0" pageNumber="7074">Japan</collectingCountry>
|
||
; stateProvince: Hokkaido; locality:
|
||
<location LSID="urn:lsid:plazi:treatment:6BC411FD3448FC4A2C8FE9C2B7786A9D:9F96C9B7FDC0C5082078592DD1233AC3" country="Japan" latitude="43.105" longitude="144.3291" name="Kushiro Marsh National Park, Hokkaido, Japan" pageId="0" pageNumber="7074">Kushiro Marsh National Park, Hokkaido, Japan</location>
|
||
; verbatimElevation:
|
||
<elevation pageId="0" pageNumber="7074">10 m</elevation>
|
||
; verbatimCoordinates: 43°6′17.6″N, 144°19′46.5″E; decimalLatitude:
|
||
<geoCoordinate orientation="latitude" pageId="0" pageNumber="7074" value="43.105">43.105</geoCoordinate>
|
||
; decimalLongitude:
|
||
<geoCoordinate orientation="longitude" pageId="0" pageNumber="7074" value="144.3291">144.3291</geoCoordinate>
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; georeferenceProtocol: GPS; Identification: identifiedBy:
|
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<determinerName pageId="0" pageNumber="7074">Shimpei F. Hiruta</determinerName>
|
||
; dateIdentified: 2013; Event: samplingProtocol:
|
||
<collectingMethod pageId="0" pageNumber="7074">Strained by 0.1 mm mesh sieve</collectingMethod>
|
||
; eventDate:
|
||
<collectingDate pageId="0" pageNumber="7074" value="2012-12-27">12/27/2012</collectingDate>
|
||
; Record Level: language: en; collectionID: ICHUM 5116; institutionCode:
|
||
<collectionCode pageId="0" pageNumber="7074">Invertebrate Collection of the Hokkaido University Museum (ICHUM)</collectionCode>
|
||
; collectionCode:
|
||
<collectionCode pageId="0" pageNumber="7074">Ostracoda</collectionCode>
|
||
; basisOfRecord: PreservedSpecimen
|
||
</materialsCitation>
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection pageId="0" pageNumber="7074" type="description">
|
||
<paragraph pageId="0" pageNumber="7074">Description</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">Description of male.</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">Carapace (Figs 2, 3, 7) 1.16-1.24 mm long, 0.62-0.66 mm high (n = 4; holotype 1.24 mm long, 0.66 mm high); greatest height situated at dorsal hump approximately one-third of length from posterior margin; either side of the dorsal humps almost straight; anterior and posterior margins equally rounded; ventral margin concave at two-fifths of length from anterior end. Calcified inner lamella wider anteriorly than posteriorly. Carapace laterally compressed in dorsal view; greatest width situated about at mid-length; LV overlapping to RV; postero-dorsal flap of LV broad and somewhat longer than antero-dorsal flap (Fig. 3; Suppl. material 4). Surface of valves smooth, color translucent white (Fig. 2).</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">A1 (Fig. 9) seven articulated segmented. First two podomeres fused, with two dorsal setae and two long, stout apico-ventral setae. Third podomere rectangular, with apico-dorsal seta. Fourth podomere quadrate, with one apico-dorsal seta. Fifth podomere quadrate, with one long apico-dorsal and one apico-ventral setae. Sixth podomere rectangular, with two long apico-dorsal and one apico-ventral setae. Seventh podomere elongate, with one long apico-dorsal and two apico-ventral setae. Eighth podomere elongate, slender, with two long and one shorter setae, and aesthetasc ya.</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">A2 (Fig. 10) five-segmented. First podomere (Pr) with one apico-ventral seta of medium length; one long antero-proximal plumose seta; one long antero-proximal seta; and one long latero-proximal seta. Second podomere (EI) with one apico-ventral seta, aesthetasc Y, and exopodite (Exo); exopodite consists of one long distally plumed and two short setae. Third podomere (EII) with two mid-apical male bristles (t2 and t3), one short apico-ventral (t1) and one apico-dorsal (t4) setae, and aesthetasc y2. Fourth podomere (EIII) with G1, short G2, z1, and z2 claws, and G3 and z3 setae. Fifth podomere (EIV) with GM and shorter GM claws, one apical seta, and aesthetasc y3.</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">Md (Fig. 11) consists of coxal plate and four-segmented palp. Coxal plate with antero-lateral seta and seven stout teeth, latter interspersed with several setae of various lengths. First podomere of palp with exopodal plate (Exo) and one long and one short, stout inner-distal plumose setae, one long antero-distal seta, and alpha simple seta. Second podomere of palp with beta seta, group of four setae, and one plumose seta. Third podomere of palp with three outer-apical setae, one mid-apical gamma seta, and two long apical setae. Fourth podomere of palp with two claws and two apical setae.</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">Mx (Figs 12, 13) with elongate vibratory plate, three masticatory processes, and two-segmented palp. Masticatory process with numerous setae. First podomere with three apical plumose setae.</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">L5 (Figs 14, 15) with palp, two filament-like setae (Exo), one antero-proximal seta, one antero-apical seta, and one postero-apical seta. Palp transformed into asymmetrical clasping processes; left clasping process (Fig. 14) slender, somewhat curved and hook-like in shape, with two short mid-setae; right clasping process (Fig. 15) sharply curved and proximally stout, helmet-like in shape, with two short mid-setae. Masticatory process with numerous setae.</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">L6 (Fig. 16) five-segmented. Apical setae (e, f, g) on second to fourth podomeres long, each extending past end of subsequent podomere. Terminal claw (h2) slender, long.</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">L7 (Fig. 17) five-segmented. Penultimate segment subdivided. First podomere with two setae (d1, dp). Fourth podomere with one apical seta (g). Fifth podomere with two long (h2, h3) and one shorter (h1) setae. One third of distal tips of the h3 seta bend.</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">Uropodal ramus (Fig. 18) with short anterior seta (Sa) and well-developed posterior seta (Sp) longer than terminal claws. Two terminal claws simple, slender.</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">Hp (Fig. 19) distally with three lobes distally; median lobe (h) elongate, directed toward dorsal side, truncate distally; outer lobe (a) elongate, directed dorsally acute distally. Inner lobe (b) largely rounded and overlapping to the other two lobes. M-process well developed, S-shaped, rounded distally. Bursa copulatrix well-developed, pointed distally, with proximal bump.</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">
|
||
<normalizedToken originalValue="Zenker’s">Zenker's</normalizedToken>
|
||
organ (Fig. 20) with 5 + 2 internal rings of spines. Seminal vesicle located at anterior end.
|
||
</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">Description of female.</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">Carapace (Figs 4, 5, 6, 8) 1.07-1.14 mm long, 0.58-0.59 mm high (n = 5; allotype 1.07 mm long, 0.58 mm high). Postero-dorsal margin of female carapace straight, with distinctive collar-like fold in right valve. Anterior margin broadly rounded, posterior margin with angular apex. Ventral margin slightly concave two-fifths of length from anterior end. Postero-dorsal flap of LV longer than that of male (Fig. 5).</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">A2 (Fig. 21) four-segmented. First (Pr) and second (EI) podomeres similar to those of male. Third podomere (EII + EIII) with claws G1, G2, and z1; short seta G3; longer setae z2, and z3; mid-dorsal seta; one postero-ventral aesthetasc y2; and four mid-ventral setae (t1-4). Fourth podomere (EIV) with GM, shorter GM, one apical seta, and aesthetasc y3.</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">Palp of L5 (Fig. 22) simple, non-segmented, with three apical setae.</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">FRO (Fig. 23) with elongate, somewhat rounded posterior projection with digitiform end. Spiral canal situated anteriorly, with wall thickened near seminal receptacle. Vaginal opening inconspicuous, without rimmed chitinized ring.</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">In other characters, female similar to male.</paragraph>
|
||
</subSubSection>
|
||
<subSubSection pageId="0" pageNumber="7074" type="diagnosis">
|
||
<paragraph pageId="0" pageNumber="7074">Diagnosis</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">Carapace with dorsal hump one-third of length from posterior end. Male carapace has anterior and posterior margins equally rounded. Female carapace has straight postero-dorsal margin, with distinctive collar-like fold in right valve. Male hemipenis very large; medial lobe elongate, rounded distally; outer lobe elongate, with spine-like protrusion; both lobes toward dorsal side. M-process well developed, S-shaped, with rounded distal end. Projection on female reproductive organ elongate, tapering distally.</paragraph>
|
||
</subSubSection>
|
||
<subSubSection pageId="0" pageNumber="7074" type="etymology">
|
||
<paragraph pageId="0" pageNumber="7074">Etymology</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">The specific epithet is an adjective derived from Kushiro Marsh, type locality, in combination with the Latin suffix -ensis.</paragraph>
|
||
</subSubSection>
|
||
<subSubSection pageId="0" pageNumber="7074" type="taxon discussion">
|
||
<paragraph pageId="0" pageNumber="7074">Taxon discussion</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">
|
||
<taxonomicName class="Ostracoda" family="Candonidae" genus="Fabaeformiscandona" higherTaxonomySource="CoL" kingdom="Animalia" lsidName="Fabaeformiscandona kushiroensis" order="Podocopida" pageId="0" pageNumber="7074" phylum="Arthropoda" rank="species" species="kushiroensis">Fabaeformiscandona kushiroensis</taxonomicName>
|
||
sp. nov. clearly belongs in the
|
||
<taxonomicName genus="Podocopa" lsidName="Podocopa acuminata" pageId="0" pageNumber="7074" rank="species" species="acuminata">acuminata</taxonomicName>
|
||
group (
|
||
<bibRefCitation author="Meisch, C." journalOrPublisher="Spektrum Akademischer Verlag, Heidelberg, Berlin" pageId="0" pageNumber="7074" title="Freshwater Ostracoda of Western and Central Europe. Suesswasserfauna von Mitteleuropa 8 / 3." year="2000">Meisch 2000</bibRefCitation>
|
||
), having four setae in the setal group on the second segment of the Md palp. In east Asia, the
|
||
<taxonomicName genus="Podocopa" lsidName="Podocopa acuminata" pageId="0" pageNumber="7074" rank="species" species="acuminata">acuminata</taxonomicName>
|
||
group contains four species,
|
||
<taxonomicName lsidName="F. danielopoli" pageId="0" pageNumber="7074" rank="species" species="danielopoli">F. danielopoli</taxonomicName>
|
||
<bibRefCitation author="Yin, Y." journalOrPublisher="Hydrobiologia" pageId="0" pageNumber="7074" pagination="117 - 128" title="On a new species of Fabaeformiscandona KRSTIC, 1972 (Crustacea, Ostracoda) from China, with a preliminary checklist of Recent Chinese non-marine ostracods." volume="357" year="1997">Yin and Martens 1997</bibRefCitation>
|
||
,
|
||
<taxonomicName lsidName="F. nishinoae" pageId="0" pageNumber="7074" rank="species" species="nishinoae">F. nishinoae</taxonomicName>
|
||
<bibRefCitation author="Smith, Robin J." journalOrPublisher="Journal of Natural History" pageId="0" pageNumber="7074" pagination="2865 - 2922" title="Recent species of the Family Candonidae (Ostracoda, Crustacea) from the ancient Lake Biwa, Central Japan" volume="42" year="2008">Smith and Janz 2008</bibRefCitation>
|
||
,
|
||
<taxonomicName lsidName="F. akaina" pageId="0" pageNumber="7074" rank="species" species="akaina">F. akaina</taxonomicName>
|
||
<bibRefCitation author="Smith, Robin J." journalOrPublisher="Journal of Natural History" pageId="0" pageNumber="7074" pagination="2865 - 2922" title="Recent species of the Family Candonidae (Ostracoda, Crustacea) from the ancient Lake Biwa, Central Japan" volume="42" year="2008">Smith and Janz 2008</bibRefCitation>
|
||
and
|
||
<taxonomicName class="Ostracoda" family="Candonidae" genus="Candona" higherTaxonomySource="CoL" kingdom="Animalia" lsidName="Candona quasiakaina" order="Podocopida" pageId="0" pageNumber="7074" phylum="Arthropoda" rank="species" species="quasiakaina">Candona quasiakaina</taxonomicName>
|
||
<bibRefCitation author="Karanovic, I." journalOrPublisher="Zootaxa" pageId="0" pageNumber="7074" pagination="7 - 49" title="A review of candonid ostracods (Crustacea: Ostracoda: Podocopida) from East Asia, with descriptions of five new species from South Korea." volume="3368" year="2012">Karanovic and Lee 2012</bibRefCitation>
|
||
. Although the new species from Kushiro Marsh is generally similar to these four Asian species, these five species are clearly distinguished form each other by the following characters. 1) The posterior dorsal margin of the female RV [almost straight with a conspicuous inner fold in
|
||
<taxonomicName lsidName="F. kushiroensis" pageId="0" pageNumber="7074" rank="species" species="kushiroensis">F. kushiroensis</taxonomicName>
|
||
; broadly rounded in the other four species]; 2) the medial lobe (h) of Hp [medial lobe elongate and directed in the dorsal direction in
|
||
<taxonomicName lsidName="F. kushiroensis" pageId="0" pageNumber="7074" rank="species" species="kushiroensis">F. kushiroensis</taxonomicName>
|
||
; relatively small and distally digitiform in
|
||
<taxonomicName lsidName="F. danielopoli" pageId="0" pageNumber="7074" rank="species" species="danielopoli">F. danielopoli</taxonomicName>
|
||
; distally flat in
|
||
<taxonomicName lsidName="F. nishinoae" pageId="0" pageNumber="7074" rank="species" species="nishinoae">F. nishinoae</taxonomicName>
|
||
; distally square-shaped in
|
||
<taxonomicName lsidName="F. akaina" pageId="0" pageNumber="7074" rank="species" species="akaina">F. akaina</taxonomicName>
|
||
; distally large and square-shaped in
|
||
<taxonomicName lsidName="C. quasiakaina" pageId="0" pageNumber="7074" rank="species" species="quasiakaina">C. quasiakaina</taxonomicName>
|
||
;]; 3) M-process of Hp [distally rounded in
|
||
<taxonomicName lsidName="F. kushiroensis" pageId="0" pageNumber="7074" rank="species" species="kushiroensis">F. kushiroensis</taxonomicName>
|
||
; distally digitiform in the other four species]; 4) FRO [with elongate, distally digitiform process in
|
||
<taxonomicName lsidName="F. kushiroensis" pageId="0" pageNumber="7074" rank="species" species="kushiroensis">F. kushiroensis</taxonomicName>
|
||
; with elongate, proximally somewhat broad process in
|
||
<taxonomicName lsidName="F. danielopoli" pageId="0" pageNumber="7074" rank="species" species="danielopoli">F. danielopoli</taxonomicName>
|
||
,
|
||
<taxonomicName lsidName="F. nishinoae" pageId="0" pageNumber="7074" rank="species" species="nishinoae">F. nishinoae</taxonomicName>
|
||
and
|
||
<taxonomicName lsidName="F. akaina" pageId="0" pageNumber="7074" rank="species" species="akaina">F. akaina</taxonomicName>
|
||
; with relatively short, proximally stout process in
|
||
<taxonomicName lsidName="C. quasiakaina" pageId="0" pageNumber="7074" rank="species" species="quasiakaina">C. quasiakaina</taxonomicName>
|
||
]. It is generally similar to
|
||
<taxonomicName lsidName="F. hyalina" pageId="0" pageNumber="7074" rank="species" species="hyalina">F. hyalina</taxonomicName>
|
||
(
|
||
<bibRefCitation author="Brady, George Stewardson" journalOrPublisher="Journal of Natural History Series 4" pageId="0" pageNumber="7074" pagination="1 - 33" title="I. - The Ostracoda and Foraminifera of Tidal Rivers. With an analysis and descriptions of the Foraminifera, by H enry B. B rady, F. L. S." volume="6" year="1870">Brady and Robertson 1870</bibRefCitation>
|
||
) and
|
||
<taxonomicName lsidName="F. levanderi" pageId="0" pageNumber="7074" rank="species" species="levanderi">F. levanderi</taxonomicName>
|
||
(
|
||
<bibRefCitation author="Hirschmann, N." journalOrPublisher="Acta Societatis pro Fauna et Flora Fennica" pageId="0" pageNumber="7074" pagination="1 - 68" title="Beitrag zur Kenntnis der Ostrakodenfauna des Finnischen Meerbusens. Zweite Mitteilung." volume="26" year="1912">Hirschmann 1912</bibRefCitation>
|
||
) in the shapes of the female and male valves, respectively. However, these three species differ in 1) the postero-dorsal margin of the female RV [almost straight with a conspicuous inner fold in
|
||
<taxonomicName lsidName="F. kushiroensis" pageId="0" pageNumber="7074" rank="species" species="kushiroensis">F. kushiroensis</taxonomicName>
|
||
; almost straight in
|
||
<taxonomicName lsidName="F. hyalina" pageId="0" pageNumber="7074" rank="species" species="hyalina">F. hyalina</taxonomicName>
|
||
; broadly rounded in
|
||
<taxonomicName lsidName="F. levanderi" pageId="0" pageNumber="7074" rank="species" species="levanderi">F. levanderi</taxonomicName>
|
||
]; 2) the distal lobes of Hp [outer (a) and medial (h) lobes elongate and directed in the dorsal direction in
|
||
<taxonomicName lsidName="F. kushiroensis" pageId="0" pageNumber="7074" rank="species" species="kushiroensis">F. kushiroensis</taxonomicName>
|
||
; outer lobe similar to
|
||
<taxonomicName lsidName="F. kushiroensis" pageId="0" pageNumber="7074" rank="species" species="kushiroensis">F. kushiroensis</taxonomicName>
|
||
, medial lobe stout and broad in
|
||
<taxonomicName lsidName="F. hyalina" pageId="0" pageNumber="7074" rank="species" species="hyalina">F. hyalina</taxonomicName>
|
||
; outer lobe broad and partly subdivided, medial lobe lacking in
|
||
<taxonomicName lsidName="F. levanderi" pageId="0" pageNumber="7074" rank="species" species="levanderi">F. levanderi</taxonomicName>
|
||
]; 3) M-process of Hp [distally rounded in
|
||
<taxonomicName lsidName="F. kushiroensis" pageId="0" pageNumber="7074" rank="species" species="kushiroensis">F. kushiroensis</taxonomicName>
|
||
; proximally stout and distally digitiform in
|
||
<taxonomicName lsidName="F. hyalina" pageId="0" pageNumber="7074" rank="species" species="hyalina">F. hyalina</taxonomicName>
|
||
; proximally stout and distally inflated in
|
||
<taxonomicName lsidName="F. levanderi" pageId="0" pageNumber="7074" rank="species" species="levanderi">F. levanderi</taxonomicName>
|
||
]; 4) FRO [with elongate, distally digitiform process in
|
||
<taxonomicName lsidName="F. kushiroensis" pageId="0" pageNumber="7074" rank="species" species="kushiroensis">F. kushiroensis</taxonomicName>
|
||
; conical in
|
||
<taxonomicName lsidName="F. hyalina" pageId="0" pageNumber="7074" rank="species" species="hyalina">F. hyalina</taxonomicName>
|
||
: with elongate, distally rounded process in
|
||
<taxonomicName lsidName="F. levanderi" pageId="0" pageNumber="7074" rank="species" species="levanderi">F. levanderi</taxonomicName>
|
||
].
|
||
<bibRefCitation author="Karanovic, I." journalOrPublisher="Zootaxa" pageId="0" pageNumber="7074" pagination="7 - 49" title="A review of candonid ostracods (Crustacea: Ostracoda: Podocopida) from East Asia, with descriptions of five new species from South Korea." volume="3368" year="2012">Karanovic and Lee (2012)</bibRefCitation>
|
||
pointed out that these four species from east Asia and
|
||
<taxonomicName lsidName="F. hyalina" pageId="0" pageNumber="7074" rank="species" species="hyalina">F. hyalina</taxonomicName>
|
||
from Europe were closely related species in which having tapering/pointed tip on outer lobe of Hp. The new species form Kushiro Marsh also may belong to the group, because of having similar outer lobe of Hp.
|
||
</paragraph>
|
||
</subSubSection>
|
||
<subSubSection pageId="0" pageNumber="7074" type="genome structure">
|
||
<paragraph pageId="0" pageNumber="7074">Genome structure</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">Gene contents and organization</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">
|
||
The mitochondrial genome of
|
||
<taxonomicName lsidName="F. kushiroensis" pageId="0" pageNumber="7074" rank="species" species="kushiroensis">F. kushiroensis</taxonomicName>
|
||
is about 17 kbp in size and includes 13 protein-coding genes, 22 tRNA genes, and two rRNA genes, as typically found in other arthropods (Fig. 24, Table 1). The order of the tRNA, rRNA, and protein-cording genes is that of the putative pancrustacean gene order (
|
||
<bibRefCitation author="Kilpert, Fabian" journalOrPublisher="Molecular Phylogenetics and Evolution" pageId="0" pageNumber="7074" pagination="106 - 117" title="Multiple rearrangements in mitochondrial genomes of Isopoda and phylogenetic implications" volume="64" year="2012">Kilpert et al. 2012</bibRefCitation>
|
||
), with the exception that the position of tRNALys has been translocated to between tRNAAla and tRNAArg (Fig. 25). There is one major non-coding region that presumably contains the origin of replication and regulatory elements for transcription, as well as tandem repeat sequences. There are small gene overlaps at 12 gene borders (Table 1), with the largest (between COIII and tRNAGly) being 50 nucleotides long. Short, non-coding sequences are also present between these genes. The largest spacer sequence (between ND4 and ND4L) is 80 nucleotides long.
|
||
</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">Nucleotide composition</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">
|
||
The overall A + T content of the
|
||
<taxonomicName lsidName="F. kushiroensis" pageId="0" pageNumber="7074" rank="species" species="kushiroensis">F. kushiroensis</taxonomicName>
|
||
mitochondrial genome is 68.8% (A = 35.1%; T = 33.7%; G = 11.8%; C = 19.4%), which is relatively low among arthropods. Table 2 gives the A + T content for each type of gene and the CR, and Table 3 gives the nucleotide composition of each codon position for the coding genes.
|
||
</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">Long tandem repeat sequences in the CR</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">The CR contains a long tandem repeat region composed of replicated 220-bp units, three of which were sequenced at each end of the region (Fig. 26). However the sequence of central part of the region is missing due to the technical reasons by Sanger sequencing method. The length of this region is about 2 kbp, estimated from electrophoresis.</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">Transfer RNA genes</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">
|
||
The A + T content of the 22 tRNA genes is 72.2%, which is higher than the overall A + T composition of the mtDNA. The secondary structures of the 22 tRNA genes were determined from the MITOS Web Server to be complete cloverleaves (Suppl. material 2). The anticodon nucleotides for the corresponding tRNA genes are identical to those in
|
||
<taxonomicName lsidName="V. hilgendorfii" pageId="0" pageNumber="7074" rank="species" species="hilgendorfii">V. hilgendorfii</taxonomicName>
|
||
. The tRNALys and tRNASer(AGN) genes encode UUU and UCU instead of the more common CUU and GCU, respectively, typical of arthropod mtDNA. Furthermore, the tRNASer(AGN) gene has lost the D-arm, which is also the condition in
|
||
<taxonomicName lsidName="V. hilgendorfii" pageId="0" pageNumber="7074" rank="species" species="hilgendorfii">V. hilgendorfii</taxonomicName>
|
||
. Several overlaps associated are with tRNA genes (Table 1).
|
||
</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">Ribosomal RNA genes</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">
|
||
The 12S rRNA (srRNA) and 16S rRNA (lrRNA) genes in
|
||
<taxonomicName lsidName="F. kushiroensis" pageId="0" pageNumber="7074" rank="species" species="kushiroensis">F. kushiroensis</taxonomicName>
|
||
are 708 and 1121 nucleotides long, respectively. Their locations and lengths were determined from an analysis of similarity to the
|
||
<taxonomicName lsidName="V. hilgendorfii" pageId="0" pageNumber="7074" rank="species" species="hilgendorfii">V. hilgendorfii</taxonomicName>
|
||
homologs and by analysis of their secondary structures reconstructed with Centroidfold (Suppl. material 3).
|
||
</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">Protein-coding genes</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">
|
||
Initiation codons in the mitochondrial protein-coding genes in
|
||
<taxonomicName lsidName="F. kushiroensis" pageId="0" pageNumber="7074" rank="species" species="kushiroensis">F. kushiroensis</taxonomicName>
|
||
are ATT (ATP8, COI, COIII, Cyt b, ND3 and ND4L), ATA (ND1, ND2, ND4 and ND5), ATC (COII, ND6), and ATG (ATP6) (Table 2). Twelve of the 13 protein-coding genes terminate with the stop codon TAA, whereas one (ND1) terminates with TAG.
|
||
</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">Nuclear ribosomal RNA genes</paragraph>
|
||
<paragraph pageId="0" pageNumber="7074">
|
||
The nuclear ribosomal RNA genes in
|
||
<taxonomicName lsidName="F. kushiroensis" pageId="0" pageNumber="7074" rank="species" species="kushiroensis">F. kushiroensis</taxonomicName>
|
||
are determined by a single sequence in which total 7805 nucleotides long, including internal transcribed spacer 1 and 2. Partial 18S rRNA (srRNA), complete 5.8S (lrRNA) and partial 28S rRNA (lrRNA) genes are 1792, 155 and 4007 nucleotides long, respectively. Their locations and lengths were determined from an analysis of similarity to the other sequences of Podocopid ostracods on GenBank and by analysis of their secondary structures reconstructed with Centroidfold.
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |