180 lines
17 KiB
XML
180 lines
17 KiB
XML
<document id="7AB5E3906DE6A78E8178CCDE3C699DC2" ID-CLB-Dataset="20545" ID-DOI="10.1099/ijsem.0.002792" ID-GBIF-Dataset="6017bde4-d384-411f-b057-0adf9900db29" ID-ISSN="1466-5034" ID-Zenodo-Dep="6223763" IM.materialsCitations_approvedBy="felipe" IM.metadata_approvedBy="felipe" IM.tables_requiresApprovalFor="existingObjects,plazi" IM.taxonomicNames_approvedBy="felipe" checkinTime="1645465651406" checkinUser="felipe" docAuthor="Kang, Heeyoung, Cha, Inseong, Kim, Haneul & Joh, Kiseong" docDate="2018" docId="03FC8798497ECD49FFDC02106A15FEFB" docLanguage="en" docName="IntJSystEvolMicrobiol.68.6.2036-2041.pdf" docOrigin="International Journal of Systematic and Evolutionary Microbiology 68 (6)" docSource="http://dx.doi.org/10.1099/ijsem.0.002792" docStyle="DocumentStyle:C64F0A4F4C66F6FC2AD4ED89351C6242.3:IntJSystEvolMicrobiol.2017-.journal_article" docStyleId="C64F0A4F4C66F6FC2AD4ED89351C6242" docStyleName="IntJSystEvolMicrobiol.2017-.journal_article" docStyleVersion="3" docTitle="Hymenobacter aquatilis Kang & Cha & Kim & Joh 2018, SP. NOV." docType="treatment" docVersion="8" lastPageNumber="2040" masterDocId="FFC5FFE0497ACD4DFFA503336E76FFF0" masterDocTitle="Hymenobacter aquatilis sp. nov., isolated from a mesotrophic artificial lake" masterLastPageNumber="2041" masterPageNumber="2036" pageNumber="2040" updateTime="1699315817414" updateUser="ExternalLinkService">
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<mods:mods id="6A1C353465AF43232500BB967F64DEFC" xmlns:mods="http://www.loc.gov/mods/v3">
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<mods:titleInfo id="0454673CEA28B4BE7652190C23C311C9">
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<mods:title id="1B400F5AD408B47CF7BA82E1F0793F00">Hymenobacter aquatilis sp. nov., isolated from a mesotrophic artificial lake</mods:title>
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<mods:name id="5B67F9D6EAB7F50E09444470D212BB35" type="personal">
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<mods:roleTerm id="A773725EF7A1CF3DD30ADF06D855B568">Author</mods:roleTerm>
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<mods:namePart id="FB90E9E4715C9D877788269C0CC93C0F">Kang, Heeyoung</mods:namePart>
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</mods:name>
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<mods:roleTerm id="CA9C36BA5ECB222A90978DBCD453FE1C">Author</mods:roleTerm>
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<mods:namePart id="704B23848D2E66ADAB36784723552719">Cha, Inseong</mods:namePart>
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<mods:roleTerm id="45F45E5C1CC4C10C2E7DA30F86D1AB35">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="FFC87809DBDDCEAB32581F15CAC5B7F5">Kim, Haneul</mods:namePart>
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</mods:name>
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<mods:name id="0C96DD7536F3F71B78CB036BCD7DCF02" type="personal">
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<mods:roleTerm id="F7655025A880F0C810CCEB53202B8B5E">Author</mods:roleTerm>
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</mods:role>
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<mods:namePart id="EE1AF7DFB58E1A4C000DC6DEE740932D">Joh, Kiseong</mods:namePart>
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</mods:name>
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<mods:typeOfResource id="5C66A57D6C53CA2DC4D357A5E0964C44">text</mods:typeOfResource>
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<mods:title id="5292FC72FC78D15106A6C01F63E0AB8C">International Journal of Systematic and Evolutionary Microbiology</mods:title>
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</mods:titleInfo>
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<mods:part id="58D14F8D6C06610AF1C0457384ACB1B1">
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<mods:date id="52F2976EBBEBA2A62EC2C24566C173AE">2018</mods:date>
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<mods:number id="163E5180943E385F5C4624EC8D2330A4">2018-06-01</mods:number>
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<mods:number id="C0F91B97F11C18B4E40FF8D83CAE1F46">68</mods:number>
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<mods:number id="5B701379EA3C07E3588302EF8C5C8A5C">6</mods:number>
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<mods:start id="EDB4D79D8197E435F12782CA2B261839">2036</mods:start>
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<mods:end id="4C7B90CB049B828E60235E46FDEDB58C">2041</mods:end>
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<mods:url id="AEB7B8BB5D0AB1BEE07100B12A1704F9">http://dx.doi.org/10.1099/ijsem.0.002792</mods:url>
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<mods:classification id="141AACD2B1187EAFA30DD3CA896405FB">journal article</mods:classification>
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<mods:identifier id="5DF70C73DFD8F9856B364206CDE0B51E" type="DOI">10.1099/ijsem.0.002792</mods:identifier>
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<mods:identifier id="5E8998F47443F1A05BAE79ECD877DE0F" type="ISSN">1466-5034</mods:identifier>
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<mods:identifier id="5819A865B948FACE3AC1A1164FABEB69" type="Zenodo-Dep">6223763</mods:identifier>
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<treatment id="03FC8798497ECD49FFDC02106A15FEFB" ID-DOI="http://doi.org/10.5281/zenodo.6314467" ID-GBIF-Taxon="193437427" ID-Zenodo-Dep="6314467" LSID="urn:lsid:plazi:treatment:03FC8798497ECD49FFDC02106A15FEFB" httpUri="http://treatment.plazi.org/id/03FC8798497ECD49FFDC02106A15FEFB" lastPageNumber="2040" pageId="4" pageNumber="2040">
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<subSubSection id="C34F6505497ECD49FFDC02106E82FE95" pageId="4" pageNumber="2040" type="nomenclature">
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<paragraph id="8BEA368E497ECD49FFDC02106E82FE95" blockId="4.[121,760,291,1949]" pageId="4" pageNumber="2040">
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<heading id="D0A281E2497ECD49FFDC02106E82FE95" allCaps="true" bold="true" centered="true" fontSize="12" level="2" pageId="4" pageNumber="2040" reason="3">
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<emphasis id="B921EA9C497ECD49FFDC02106E82FE95" bold="true" pageId="4" pageNumber="2040">
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DESCRIPTION OF
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<taxonomicName id="4C554D0D497ECD49FECB02106C9DFEB0" authority="Kang & Cha & Kim & Joh, 2018" authorityName="Kang & Cha & Kim & Joh" authorityYear="2018" box="[366,747,291,320]" class="Cytophagia" family="Cytophagaceae" genus="Hymenobacter" kingdom="Bacteria" order="Cytophagales" pageId="4" pageNumber="2040" phylum="Bacteroidetes" rank="species" species="aquatilis" status="sp. nov.">
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<emphasis id="B921EA9C497ECD49FECB02106C9DFEB0" bold="true" box="[366,747,291,320]" italics="true" pageId="4" pageNumber="2040">HYMENOBACTER AQUATILIS</emphasis>
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</taxonomicName>
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<taxonomicNameLabel id="A21257E7497ECD49FFDC027B6E82FE95" box="[121,244,328,357]" pageId="4" pageNumber="2040" rank="species">SP. NOV.</taxonomicNameLabel>
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</emphasis>
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</heading>
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</paragraph>
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</subSubSection>
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<subSubSection id="C34F6505497ECD49FFDC02476F0FFE5B" pageId="4" pageNumber="2040" type="etymology">
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<paragraph id="8BEA368E497ECD49FFDC02476F0FFE5B" blockId="4.[121,760,291,1949]" pageId="4" pageNumber="2040">
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<taxonomicName id="4C554D0D497ECD49FFDC02476F00FE7C" authorityName="Kang & Cha & Kim & Joh" authorityYear="2018" box="[121,374,372,396]" class="Cytophagia" family="Cytophagaceae" genus="Hymenobacter" kingdom="Bacteria" order="Cytophagales" pageId="4" pageNumber="2040" phylum="Bacteroidetes" rank="species" species="aquatilis">
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<emphasis id="B921EA9C497ECD49FFDC02476F00FE7C" box="[121,374,372,396]" italics="true" pageId="4" pageNumber="2040">Hymenobacter aquatilis</emphasis>
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</taxonomicName>
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(a.qua′ ti.lis. L. masc. adj.
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<taxonomicName id="4C554D0D497ECD49FD3802476C80FE7C" authorityName="Kang & Cha & Kim & Joh" authorityYear="2018" box="[669,758,372,396]" class="Cytophagia" family="Cytophagaceae" genus="Hymenobacter" kingdom="Bacteria" order="Cytophagales" pageId="4" pageNumber="2040" phylum="Bacteroidetes" rank="species" species="aquatilis">
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<emphasis id="B921EA9C497ECD49FD3802476C80FE7C" box="[669,758,372,396]" italics="true" pageId="4" pageNumber="2040">aquatilis</emphasis>
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</taxonomicName>
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aquatic, living in water).
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</paragraph>
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</subSubSection>
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<subSubSection id="C34F6505497ECD49FFDC02F26A15FEFB" pageId="4" pageNumber="2040" type="description">
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<paragraph id="8BEA368E497ECD49FFDC02F26C19F86D" blockId="4.[121,760,291,1949]" pageId="4" pageNumber="2040">
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Cells are strictly aerobic, Gram-stain-negative, non-motile rods, approximately 0.5–0.8 µm wide and 1.7–3.0 µm long. Colonies on R2A agar are irregular, wavy, umbonate, pale red-coloured and approximately
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<quantity id="4CAD9B6B497ECD49FE4501126C40FDC9" box="[480,566,544,569]" metricMagnitude="-3" metricUnit="m" metricValue="5.0" metricValueMax="6.0" metricValueMin="4.0" pageId="4" pageNumber="2040" unit="mm" value="5.0" valueMax="6.0" valueMin="4.0">4–6 mm</quantity>
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in diameter after 2 days at 30
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<superScript id="7C209BC6497ECD49FF58010C6F72FDB9" attach="right" box="[253,260,575,585]" fontSize="6" pageId="4" pageNumber="2040">Ǫ</superScript>
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C. Growth occurs at 10–37
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<superScript id="7C209BC6497ECD49FD94010C6C4EFDB9" attach="right" box="[561,568,575,585]" fontSize="6" pageId="4" pageNumber="2040">Ǫ</superScript>
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C (optimum, 25– 30
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<superScript id="7C209BC6497ECD49FF32016C6EE8FD99" attach="right" box="[151,158,607,617]" fontSize="6" pageId="4" pageNumber="2040">Ǫ</superScript>
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C), at pH 7–8 (optimum, pH 7.0) and in R2A broth supplemented with 0–0.5 % NaCl (optimum, 0 % NaCl). Good growth occurs on NA, but not on blood, marine, TSA or MacConkey agars. Casein (skimmed milk) and starch are hydrolysed. DNA, dextrin, CM-cellulose and cellulose are not hydrolysed. Susceptible to ampicillin, chloramphenicol, erythromycin, rifampicin, tetracycline and vancomycin, but resistant to gentamicin, kanamycin, penicillin G and streptomycin. In the API 20NE strip, positive results are obtained for aesculin and gelatin hydrolyses, and
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<emphasis id="B921EA9C497ECD49FDF100B26C12FC69" box="[596,612,897,921]" italics="true" pageId="4" pageNumber="2040">β</emphasis>
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-galactosidase (PNPG test) activity and assimilation of D- glucose, D- mannose and maltose, but negative results for nitrate reduction, indole production, glucose ferementation, arginine dihydrolase and urease activities, and assimilation of L- arabinose, D- mannitol,
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<emphasis id="B921EA9C497ECD49FEAE07126F68FBC8" box="[267,286,1057,1080]" italics="true" pageId="4" pageNumber="2040">N</emphasis>
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-acetyl-glucosamine, potassium gluconate, capric acid, adipic acid, malic acid, trisodium citrate and phenylacetic acid. In the API ZYM strip, positive results are obtained for alkaline phosphatase, esterase (C4), esterase lipase (C8), leucine arylamidase, valine arylamidase, cystine arylamidase, trypsin, acid phosphatase, naphthol-AS- BI-phosphohydrolase and
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<emphasis id="B921EA9C497ECD49FE1507D36FB6FB08" box="[432,448,1248,1272]" italics="true" pageId="4" pageNumber="2040">Oi</emphasis>
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-glucosidase and
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<emphasis id="B921EA9C497ECD49FD3007D36CDEFB07" box="[661,680,1248,1271]" italics="true" pageId="4" pageNumber="2040">N</emphasis>
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-
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<emphasis id="B921EA9C497ECD49FD0B07EC6EFFFAE8" italics="true" pageId="4" pageNumber="2040">acetylβ</emphasis>
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-glucosaminidase activities are present; lipase (C14),
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<emphasis id="B921EA9C497ECD49FFDC06136EFFFAC8" box="[121,137,1312,1336]" italics="true" pageId="4" pageNumber="2040">Oi</emphasis>
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-chymotrypsin,
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<emphasis id="B921EA9C497ECD49FE9006136F33FAC8" box="[309,325,1312,1336]" italics="true" pageId="4" pageNumber="2040">Oi</emphasis>
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-galactosidase,
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<emphasis id="B921EA9C497ECD49FE4206136F81FAC8" box="[487,503,1312,1336]" italics="true" pageId="4" pageNumber="2040">β</emphasis>
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-galactosidase,
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<emphasis id="B921EA9C497ECD49FD3F06136CDCFAC8" box="[666,682,1312,1336]" italics="true" pageId="4" pageNumber="2040">β</emphasis>
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-glucuronidase,
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<emphasis id="B921EA9C497ECD49FF4306736E80FAA8" box="[230,246,1344,1368]" italics="true" pageId="4" pageNumber="2040">β</emphasis>
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-glucosidase,
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<emphasis id="B921EA9C497ECD49FE2F06736FECFAA8" box="[394,410,1344,1368]" italics="true" pageId="4" pageNumber="2040">Oi</emphasis>
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-mannosidase and
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<emphasis id="B921EA9C497ECD49FDD506736CF6FAA8" box="[624,640,1344,1368]" italics="true" pageId="4" pageNumber="2040">Oi</emphasis>
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-fucosidase activities are absent. In the GN2 Biolog MicroPlate,
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<emphasis id="B921EA9C497ECD49FD3806536CDBFA88" box="[669,685,1376,1400]" italics="true" pageId="4" pageNumber="2040">Oi</emphasis>
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-cyclodextrin, glycogen, adonitol, cellobiose, L- fucose,
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<emphasis id="B921EA9C497ECD49FD3E064C6CDDFA67" box="[667,683,1407,1431]" italics="true" pageId="4" pageNumber="2040">Oi</emphasis>
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-D- glucose, maltose, D- mannose, methyl
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<emphasis id="B921EA9C497ECD49FE4E06AC6F8DFA47" box="[491,507,1439,1463]" italics="true" pageId="4" pageNumber="2040">β</emphasis>
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-D- glucoside, D- psicose,
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<subScript id="17D134CB497ECD49FFDC06F66EF8FA27" attach="none" box="[121,142,1471,1495]" fontSize="7" pageId="4" pageNumber="2040">D-</subScript>
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sorbitol, sucrose, trehalose, turanose, pyruvic acid methyl ester, succinic acid mono-methyl-ester, acetic acid,
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<emphasis id="B921EA9C497ECD49FD0306EC6CC0FA07" box="[678,694,1503,1527]" italics="true" pageId="4" pageNumber="2040">Oi</emphasis>
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-ketobutyric acid, propionic acid, succinic acid, bromosuccinic acid, L- alanine, L- glutamic acid, glycyl-L- aspartic acid, glycyl-L- glutamic acid, L- ornithine, L- proline, L- threonine, D, L- carnitine,
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<emphasis id="B921EA9C497ECD49FF5C05576F7EF98C" box="[249,264,1636,1660]" italics="true" pageId="4" pageNumber="2040">Ƴ</emphasis>
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-amino butyric acid,
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<emphasis id="B921EA9C497ECD49FE4F05576F8CF98C" box="[490,506,1636,1660]" italics="true" pageId="4" pageNumber="2040">Oi</emphasis>
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-D- glucose-1-phosphate and D- glucose-6-phosphate are utilized. Other substrates are not utilized (Table S1). The major cellular fatty acids are iso-C
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<subScript id="17D134CB497ECD49FF1405FC6EACF910" attach="left" box="[177,218,1743,1760]" fontSize="7" pageId="4" pageNumber="2040">15: 0</subScript>
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, C
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||
<subScript id="17D134CB497ECD49FF5F05FC6F55F910" attach="both" box="[250,291,1743,1760]" fontSize="7" pageId="4" pageNumber="2040">16: 1</subScript>
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<emphasis id="B921EA9C497ECD49FE8705F86F44F92D" box="[290,306,1739,1757]" italics="true" pageId="4" pageNumber="2040">Ɯ</emphasis>
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5
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<emphasis id="B921EA9C497ECD49FE9A05F56F3FF92D" box="[319,329,1734,1757]" italics="true" pageId="4" pageNumber="2040">c</emphasis>
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, summed feature 4 (iso-C
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||
<subScript id="17D134CB497ECD49FDCE05FC6CE5F910" attach="left" box="[619,659,1743,1760]" fontSize="7" pageId="4" pageNumber="2040">17: 1</subScript>
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I and/or anteiso-C
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<subScript id="17D134CB497ECD49FF4D05DC6F66F8F0" attach="none" box="[232,272,1775,1792]" fontSize="7" pageId="4" pageNumber="2040">17: 1</subScript>
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B) and summed feature 3 (C
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<subScript id="17D134CB497ECD49FDF205DC6C09F8F0" attach="both" box="[599,639,1775,1792]" fontSize="7" pageId="4" pageNumber="2040">16: 1</subScript>
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||
<emphasis id="B921EA9C497ECD49FDDA05D86CF9F90D" box="[639,655,1771,1789]" italics="true" pageId="4" pageNumber="2040">Ɯ</emphasis>
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7
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<emphasis id="B921EA9C497ECD49FD3905D56CD0F90D" box="[668,678,1766,1789]" italics="true" pageId="4" pageNumber="2040">c</emphasis>
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and/or C
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<subScript id="17D134CB497ECD49FF2F043C6EC4F8D0" attach="both" box="[138,178,1807,1824]" fontSize="7" pageId="4" pageNumber="2040">16: 1</subScript>
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||
<emphasis id="B921EA9C497ECD49FF1704386EB4F8ED" box="[178,194,1803,1821]" italics="true" pageId="4" pageNumber="2040">Ɯ</emphasis>
|
||
6
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<emphasis id="B921EA9C497ECD49FF6A04356EAFF8ED" box="[207,217,1798,1821]" italics="true" pageId="4" pageNumber="2040">c</emphasis>
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) and anteiso-C
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<subScript id="17D134CB497ECD49FE2F043C6FC4F8D0" attach="left" box="[394,434,1807,1824]" fontSize="7" pageId="4" pageNumber="2040">15: 0</subScript>
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. Menaquinone-7 is the only respiratory quinone. The predominant polar lipids are phosphatidylethanolamine, three unidentified aminophospholipids and one unidentified phospholipid. The genomic DNA G+C content of strain HMF3095
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<superScript id="7C209BC6497ECD49FE77044D6FA8F87F" attach="left" box="[466,478,1918,1935]" fontSize="7" pageId="4" pageNumber="2040">T</superScript>
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is 58.9 mol%.
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</paragraph>
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<paragraph id="8BEA368E497ECD49FC9E03856A15FEFB" blockId="4.[827,1465,177,268]" pageId="4" pageNumber="2040">
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<materialsCitation id="3B3D3CD3497ECD49FC9E03856A15FEFB" ID-GBIF-Occurrence="3470285301" collectionCode="HMF" country="South Korea" location="Yong-in" municipality="Yong-in" pageId="4" pageNumber="2040" specimenCode="HMF3095T" specimenCount="1" typeStatus="holotype">
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The
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<typeStatus id="54EE882C497ECD49FCD003846DD4FF3F" box="[885,930,183,207]" pageId="4" pageNumber="2040">type</typeStatus>
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strain is
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<specimenCode id="DBF39EF5497ECD49FB8403856AECFF31" box="[1057,1178,176,206]" pageId="4" pageNumber="2040">HMF3095T</specimenCode>
|
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(=KCTC 52398T=NBRC 112669
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<superScript id="7C209BC6497ECD49FC2203FC6DE5FF10" attach="none" box="[903,915,207,224]" fontSize="7" pageId="4" pageNumber="2040">T</superScript>
|
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), isolated from freshwater of an artificial lake in
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<collectingMunicipality id="6B8EACF4497ECD49FC9E03C76DE2FEFC" box="[827,916,244,268]" pageId="4" pageNumber="2040">Yong-in</collectingMunicipality>
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,
|
||
<collectingCountry id="F342761E497ECD49FC3B03C76A29FEFB" box="[926,1119,244,268]" name="South Korea" pageId="4" pageNumber="2040">Republic of Korea</collectingCountry>
|
||
.
|
||
</materialsCitation>
|
||
</paragraph>
|
||
</subSubSection>
|
||
</treatment>
|
||
</document> |