167 lines
16 KiB
XML
167 lines
16 KiB
XML
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<mods:title id="5E53BA10D442413FB11DD4CB71B9EB11">DNA barcode identification of lichen-forming fungal species in the Rhizoplaca melanophthalma species-complex (Lecanorales, Lecanoraceae), including five new species</mods:title>
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<mods:namePart id="9654350D859EF12D1866523914006DD1">Leavitt, Steven D.</mods:namePart>
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<mods:namePart id="D04CB3CBEA29E590D867EE462A8D5CB9">Fernandez-Mendoza, Fernando</mods:namePart>
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<mods:namePart id="B601EB1C7163DCC8C8FF98E6C9DA10AC">Perez-Ortega, Sergio</mods:namePart>
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<mods:namePart id="08C27EC4192BBE065178B4FE823CFDF1">Sohrabi, Mohammad</mods:namePart>
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<mods:namePart id="27DAAC0A067FEFEBA419A19082C19A63">Divakar, Pradeep K.</mods:namePart>
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<mods:namePart id="B8030141A74104192AB81FE3D513E8B5">Lumbsch, H. Thorsten</mods:namePart>
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<mods:namePart id="EBD7A24FDCF437D6A44B16AF325B28A4">Clair, Larry L. St.</mods:namePart>
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<mods:title id="ED439A3AB08449A073793247F1212C35">MycoKeys</mods:title>
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<mods:date id="21417737600181F5ADF69716EA2443BF">2013</mods:date>
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<mods:detail id="B2607EC417E4234A83F7B8A9F1BB9732" type="volume">
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<mods:number id="E7F8B9B10F0123CB9E31E1C18C2FD1F1">7</mods:number>
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<mods:start id="F6E46967D3DE78523502E283682034D1">1</mods:start>
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<mods:end id="01F22985C1E7B26CE79C28197147A5A3">22</mods:end>
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<mods:url id="F3D02BF874A76C6924099243E1267694">http://dx.doi.org/10.3897/mycokeys.7.4508</mods:url>
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<mods:classification id="AE370311319DD29983C096CDBCA52A37">journal article</mods:classification>
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<mods:identifier id="833EB350A402865761D239935DB1671F" type="DOI">http://dx.doi.org/10.3897/mycokeys.7.4508</mods:identifier>
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<mods:identifier id="267EA0874164884C22B200844FE69CE3" type="Pensoft-Pub">1314-4049-7-1</mods:identifier>
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<treatment id="8877EF1DC7DF07E05F7CBFED71EE1896" ID-GBIF-Taxon="152023593" LSID="urn:lsid:plazi:treatment:8877EF1DC7DF07E05F7CBFED71EE1896" httpUri="http://treatment.plazi.org/id/8877EF1DC7DF07E05F7CBFED71EE1896" lastPageId="11" lastPageNumber="12" pageId="10" pageNumber="11" scope_family="Lecanoraceae" scope_order="Lecanorales">
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<subSubSection id="46DF9A7A61988CD8D54D8385EC9CD849" pageId="10" pageNumber="11" type="nomenclature">
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<paragraph id="6733C9055A1597F16F5E8B7599A0F8CC" pageId="10" pageNumber="11">
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<taxonomicName id="71365081C0D1FD6EBE95F087A8DB821B" LSID="MycoBank no. MB 803478" authority="S. Leavitt, F. Fernandez-Mendoza, Lumbsch, Sohrabi & L. St. Clair" class="Lecanoromycetes" family="Lecanoraceae" genus="Rhizoplaca" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Rhizoplaca porterii" order="Lecanorales" pageId="10" pageNumber="11" phylum="Ascomycota" rank="species" species="porterii">
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Rhizoplaca porterii S. Leavitt, F.
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<normalizedToken id="97BE35F1F31F30BBC3E1250B6C422C98" originalValue="Fernández-Mendoza">Fernandez-Mendoza</normalizedToken>
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, Lumbsch, Sohrabi & L. St. Clair
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</taxonomicName>
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<taxonomicNameLabel id="0292740FDBA12511283E0ADB0E20F8E0" pageId="10" pageNumber="11">sp. nov.</taxonomicNameLabel>
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</paragraph>
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</subSubSection>
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<subSubSection id="B024D028E1A31CBDEC7C19BE714CC4C9" pageId="10" pageNumber="11" type="type">
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<paragraph id="F1D615163D500FEB37EE6124426AF3E0" pageId="10" pageNumber="11">Type.</paragraph>
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<paragraph id="7E253AA4E66AF0B58275FD000D77333C" pageId="10" pageNumber="11">
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USA, Utah, Wayne County, Thousand Lakes Mountain, vicinity of 'Flat
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<normalizedToken id="013EEB7286C1E80AED0DFB71B2DD4955" originalValue="Top’">Top'</normalizedToken>
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, near summit,
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<geoCoordinate id="CE29F0F58FD75BE0CDA8145A571E538D" direction="north" orientation="latitude" precision="5" value="38.4432">38.4432°N</geoCoordinate>
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,
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<geoCoordinate id="568C0A69A35B66D28339E08C1F62252E" direction="west" orientation="longitude" precision="5" value="-111.4703">111.4703°W</geoCoordinate>
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, on basalt, 3400 m alt., October 1997, Lyndon D. Porter BRY-C55096 (holotype BRY).
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</paragraph>
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</subSubSection>
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<subSubSection id="0DBBACA24C4B06D85C1A8B786C9A3B44" pageId="10" pageNumber="11" type="description">
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<paragraph id="BD4C2CF90327BA558EFDA9C91F0F8284" pageId="10" pageNumber="11">Description.</paragraph>
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<paragraph id="835D533D5131698FDAFEE5CCFC3D6E9D" pageId="10" pageNumber="11">
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Morphologically similar to
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<taxonomicName id="39A70E0A6386101AAD897EC0DCAB1152" class="Lecanoromycetes" family="Lecanoraceae" genus="Rhizoplaca" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Rhizoplaca melanophthalma" order="Lecanorales" pageId="10" pageNumber="11" phylum="Ascomycota" rank="species" species="melanophthalma">Rhizoplaca melanophthalma</taxonomicName>
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sensu stricto, but consists of specimens recovered within 'clade
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<normalizedToken id="397479250B8F8F3011E481F241E6C5EA" originalValue="IVd’">IVd'</normalizedToken>
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in
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<bibRefCitation id="438A6BC43F56C52A6E7D3A9B0D9F8496" author="Leavitt, SD" journalOrPublisher="Molecular Phylogenetics and Evolution" pageId="16" pageNumber="17" pagination="587 - 602" title="Complex patterns of speciation in cosmopolitan '' rock posy' ' lichens - Discovering and delimiting cryptic fungal species in the lichen-forming Rhizoplaca melanophthalma species-complex (Lecanoraceae, Ascomycota)." url="10.1016/j.ympev.2011.03.020" volume="59" year="2011 a">Leavitt et al. (2011a)</bibRefCitation>
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, which is supported as a lineage distinct from all other populations according to coalescent-based genetic analysis of multiple genetic loci. This species is also characterized by the absence of a group I intron in the nuclear SSU rDNA at the 1516 position (
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<bibRefCitation id="9A869F1BD6E670A28105277E061A0125" author="Gutierrez, G" journalOrPublisher="Journal of Molecular Evolution" pageId="16" pageNumber="17" pagination="181 - 195" title="Patterns of group i intron presence in nuclear SSU rDNA of the lichen family Parmeliaceae." url="10.1007/s00239-005-0313-y" volume="64" year="2007">
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<normalizedToken id="6E5023D0193B0EAAD3ECA01ACE6699B5" originalValue="Gutiérrez">Gutierrez</normalizedToken>
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et al. 2007
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</bibRefCitation>
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), which is present in all other species within the
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<taxonomicName id="34B270ACA3CA2A7F68E5D8B4938515F5" class="Lecanoromycetes" family="Lecanoraceae" genus="Rhizoplaca" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Rhizoplaca melanophthalma" order="Lecanorales" pageId="10" pageNumber="11" phylum="Ascomycota" rank="species" species="melanophthalma">Rhizoplaca melanophthalma</taxonomicName>
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species-complex. The mean genetic distances among ITS haplotypes was estimated to be 0.002
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<normalizedToken id="2A83ED2D37F193537B57803B4A367AF0" originalValue="±">+/-</normalizedToken>
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0.002.
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</paragraph>
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<paragraph id="2A1B8AA67B4A818E19392C50D31CDD7D" pageId="10" pageNumber="11">
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<normalizedToken id="8A108DDC6B64C411A33863C2FF77D11F" originalValue="Chemistry–">Chemistry-</normalizedToken>
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Usnic acid (major); usually with psoromic (major), constipatic (minor), dehydroconstipatic (minor), dehydroprotocetraric (minor), subpsoromic (minor), demethylpsoromic (minor), and 2'-O-demethylsubpsoromic (minor or trace) acids.
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</paragraph>
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</subSubSection>
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<subSubSection id="3E224B9392032681B1A5E6518D004DCB" pageId="10" pageNumber="11" type="reference phylogeny">
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<paragraph id="B1C80D28E3BBB84A2F02AE6BC6060073" pageId="10" pageNumber="11">Reference phylogeny.</paragraph>
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<paragraph id="83ED0C337464AEDBD4733D539D380F4E" pageId="10" pageNumber="11">
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<bibRefCitation id="84895E981F57A12751FAC6AACA09E312" author="Leavitt, SD" journalOrPublisher="Molecular Phylogenetics and Evolution" pageId="16" pageNumber="17" pagination="587 - 602" title="Complex patterns of speciation in cosmopolitan '' rock posy' ' lichens - Discovering and delimiting cryptic fungal species in the lichen-forming Rhizoplaca melanophthalma species-complex (Lecanoraceae, Ascomycota)." url="10.1016/j.ympev.2011.03.020" volume="59" year="2011 a">Leavitt et al. 2011a</bibRefCitation>
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(fig. 5, 'clade
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<normalizedToken id="673F864EC9166D73A45AEF94435A9FB0" originalValue="IVd’">IVd'</normalizedToken>
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).
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</paragraph>
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</subSubSection>
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<subSubSection id="DFD4A461E9C5638AED77EC78503910B7" pageId="10" pageNumber="11" type="reference sequences">
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<paragraph id="066160E50D56BB763322C93F3E7AA2B6" pageId="10" pageNumber="11">Reference sequences.</paragraph>
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<paragraph id="173229033000A579F276DD9A8CB86B18" pageId="10" pageNumber="11">GenBank Nos. HM577327 (ITS), HM57710 (IGS), HM577461 (MCM 7), and HM576971 (β-tubulin).</paragraph>
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<paragraph id="30BE136D7E156A9E8C8EEE766F223B5F" pageId="10" pageNumber="11">
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Phylogenetic notes: A monophyletic lineage in both concatenated multilocus gene tree with weak statistical support (ML bootstrap <50%; posterior probability <0.5), and with strong statistical support in the ITS gene topology (ML bootstrap = 94%, this study); and strong speciation probability inferred from multiple loci (BPP speciation probability ≥ 0.97).
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<taxonomicName id="4DE7180D9B7B0217D8FA20E3B2E01F39" class="Lecanoromycetes" family="Lecanoraceae" genus="Rhizoplaca" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Rhizoplaca porterii" order="Lecanorales" pageId="10" pageNumber="11" phylum="Ascomycota" rank="species" species="porterii">Rhizoplaca porterii</taxonomicName>
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belongs to a closely related, and well-supported, monophyletic lineage including
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<taxonomicName id="93EA4B78A1237C3E2609E06BF981F711" class="Lecanoromycetes" family="Lecanoraceae" genus="Rhizoplaca" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Rhizoplaca occulta" order="Lecanorales" pageId="10" pageNumber="11" phylum="Ascomycota" rank="species" species="occulta">Rhizoplaca occulta</taxonomicName>
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,
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<taxonomicName id="364023799BAE73F3197F5D0EE81B0F6F" class="Lecanoromycetes" family="Lecanoraceae" genus="Rhizoplaca" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Rhizoplaca parilis" order="Lecanorales" pageId="10" pageNumber="11" phylum="Ascomycota" rank="species" species="parilis">Rhizoplaca parilis</taxonomicName>
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,
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<taxonomicName id="557131B14047C33E76C8ADC39F1E922B" class="Lecanoromycetes" family="Lecanoraceae" genus="Rhizoplaca" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Rhizoplaca porterii" order="Lecanorales" pageId="10" pageNumber="11" phylum="Ascomycota" rank="species" species="porterii">Rhizoplaca porterii</taxonomicName>
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, and the obligatory vagrant species
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<taxonomicName id="7DE10144CCB3F8570F99E49A0FDEEE78" class="Lecanoromycetes" family="Lecanoraceae" genus="Rhizoplaca" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Rhizoplaca haydenii" order="Lecanorales" pageId="10" pageNumber="11" phylum="Ascomycota" rank="species" species="haydenii">Rhizoplaca haydenii</taxonomicName>
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and
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<taxonomicName id="AB8A04A2478F47EF640BA16804CE94C1" class="Lecanoromycetes" family="Lecanoraceae" genus="Rhizoplaca" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Rhizoplaca idahoensis" order="Lecanorales" pageId="10" pageNumber="11" phylum="Ascomycota" rank="species" species="idahoensis">Rhizoplaca idahoensis</taxonomicName>
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.
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</paragraph>
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</subSubSection>
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<subSubSection id="F7B1C06295CBF9E1B723F00BF171A356" pageId="11" pageNumber="12" type="ecology and distribution">
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<paragraph id="5585A02C1A538D239CCF7F42DEFE60F7" pageId="11" pageNumber="12">
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<pageBreakToken id="02C122BFD4EC101C46627D1C0AB8A226" pageId="11" pageNumber="12" start="start">Ecology</pageBreakToken>
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and distribution.
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</paragraph>
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<paragraph id="91324A0335476A461272A5F30AFD765A" pageId="11" pageNumber="12">This species usually occurs on exposed calcium-poor rock (e.g. basalt, granite, schist), but sometimes on calcium rich sandstone and limestone. Its habitat ranges from pinyon-juniper woodland into montane coniferous forests and lower alpine tundra. This taxon iscurrently known only from the western USA (Idaho and Utah).</paragraph>
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</subSubSection>
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<subSubSection id="AE3A7C351747941E253853019000B9FC" pageId="11" pageNumber="12" type="etymology">
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<paragraph id="0D4A43249D7DFA790E5F958C15466A3D" pageId="11" pageNumber="12">Etymology.</paragraph>
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<paragraph id="1A439686DED48A1CC146AB9C18C7D7BD" pageId="11" pageNumber="12">
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The new taxon is named in honor ofDr. Lyndon D. Porter, whose research on
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<taxonomicName id="58DC9E569C7620AF64B95B4EACCE150C" class="Lecanoromycetes" family="Lecanoraceae" genus="Rhizoplaca" higherTaxonomySource="CoL" kingdom="Fungi" lsidName="Rhizoplaca melanophthalma" order="Lecanorales" pageId="11" pageNumber="12" phylum="Ascomycota" rank="species" species="melanophthalma">Rhizoplaca melanophthalma</taxonomicName>
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proved invaluable to the present work.
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</paragraph>
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</subSubSection>
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<subSubSection id="95EE1A5774DE6007BF1A01B779863DF7" pageId="11" pageNumber="12" type="specimens examined">
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<paragraph id="4FB8DB9C492720C04403625D834574AF" pageId="11" pageNumber="12">Specimens examined.</paragraph>
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<paragraph id="FA1EFD2CC9880129085984424A7DB1BF" pageId="11" pageNumber="12">See supplementary file 1.</paragraph>
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</subSubSection>
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</treatment>
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</document> |